mRNA_Ecto-sp8_S_contig103317.536.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103317.536.1
Unique NamemRNA_Ecto-sp8_S_contig103317.536.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: A0A6H5JHG4_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.600e-26
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    4 GQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
            GQP+RLVRVRNPWGKREWIGDWG+KSEKWSD VRAELGWSE+NDGTFWM
Sbjct:  110 GQPLRLVRVRNPWGKREWIGDWGEKSEKWSDRVRAELGWSEQNDGTFWM 158
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: D7FTW8_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW8_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.160e-17
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   43 GKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
            GKREWIGDWG+KSEKWSDSVRAELGWSEKNDGTFWM
Sbjct:  487 GKREWIGDWGEKSEKWSDSVRAELGWSEKNDGTFWM 522
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: A0A5B8MKZ2_9CHLO (Calpain-type cysteine proteinase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MKZ2_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 1.940e-16
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 SGQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
             G  +RL+R+RNP G+REW+GDW DKS+KW+ ++ A+LG +EKNDGTFWM
Sbjct:  441 QGSLLRLLRIRNPHGQREWLGDWSDKSDKWTSTLHAKLGRTEKNDGTFWM 490
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: A0A7S3FQR2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQR2_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 4.930e-16
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   13 IRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
            +RL+R+RNPWGKREW GD+ D+SEKW++++RA LG + KNDGTFWM
Sbjct:  464 LRLLRIRNPWGKREWNGDFSDESEKWTNALRARLGKTSKNDGTFWM 509
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: C1MTG3_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MTG3_MICPC)

HSP 1 Score: 76.3 bits (186), Expect = 5.980e-15
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 SGQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
            S  P+RLVRVRNPWG++EW G+WG KSE W+  + AELG +  +DGTFWM
Sbjct:  552 SPPPLRLVRVRNPWGRKEWNGEWGAKSETWTSRLGAELGNTRADDGTFWM 601
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: A0A7S3AUP0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AUP0_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.450e-14
Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 SGQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
             G  +RL+++RNPWG+ EW G W DKS+KW+ +++AE+G+  K+DG FWM
Sbjct:   65 EGGKLRLMQLRNPWGRFEWTGAWSDKSKKWTPALKAEVGFERKDDGCFWM 114
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: A0A7R9THC7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9THC7_MICPS)

HSP 1 Score: 74.3 bits (181), Expect = 1.860e-14
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   13 IRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
            +RLVRVRNPWG++EW GDWG KSE W+  + AELG +  +DGTFWM
Sbjct:  206 LRLVRVRNPWGRKEWNGDWGAKSETWTSRLGAELGNTRADDGTFWM 251
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: A0A2R5G7Y8_9STRA (Calpain-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7Y8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.080e-14
Identity = 26/50 (52.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 SGQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
             G+ ++++R+RNPWG+ EW GDW DKS  W+DS+R+E+GW+ +NDG F++
Sbjct:  346 KGRVLKVLRIRNPWGRFEWNGDWSDKSSLWTDSLRSEVGWTNENDGIFFI 395
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BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: C1E493_MICCC (Calpain catalytic domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E493_MICCC)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 SGQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
             G P+RL+R+RNPWG++EW G+WG  SE W+  + AELG +  +DGTFWM
Sbjct:  506 GGPPLRLLRIRNPWGRKEWSGEWGAGSEVWTSKLGAELGHTRVDDGTFWM 555
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Match: A0A7S0PIL3_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PIL3_MICPS)

HSP 1 Score: 73.9 bits (180), Expect = 3.290e-14
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 SGQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM 150
             G P+RL+R+RNPWG++EW G+WG  SE W+  + AELG +  +DGTFWM
Sbjct:    6 GGGPLRLLRIRNPWGRKEWSGEWGAGSEVWTSKLGAELGHTRVDDGTFWM 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103317.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHG4_9PHAE1.600e-2691.84Calpain catalytic domain-containing protein n=1 Ta... [more]
D7FTW8_ECTSI1.160e-1797.22Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A5B8MKZ2_9CHLO1.940e-1662.00Calpain-type cysteine proteinase n=2 Tax=Chloropic... [more]
A0A7S3FQR2_9CHLO4.930e-1667.39Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
C1MTG3_MICPC5.980e-1562.00Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S3AUP0_9EUKA1.450e-1452.00Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7R9THC7_MICPS1.860e-1465.22Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A2R5G7Y8_9STRA2.080e-1452.00Calpain-like protein n=1 Tax=Hondaea fermentalgian... [more]
C1E493_MICCC2.850e-1456.00Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A7S0PIL3_MICPS3.290e-1456.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103317contigEcto-sp8_S_contig103317:1..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.7
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog2880.D7FTW8
Model size150
KEGG koko:K08582
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size150
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.9233103-CDS-Ecto-sp8_S_contig103317:0..1091681143131.9233103-CDS-Ecto-sp8_S_contig103317:0..109Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103317 1..109 -
1681143131.9355645-CDS-Ecto-sp8_S_contig103317:258..2991681143131.9355645-CDS-Ecto-sp8_S_contig103317:258..299Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103317 259..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103317.536.1prot_Ecto-sp8_S_contig103317.536.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103317 1..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103317.536.1

>prot_Ecto-sp8_S_contig103317.536.1 ID=prot_Ecto-sp8_S_contig103317.536.1|Name=mRNA_Ecto-sp8_S_contig103317.536.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=50bp
SGQPIRLVRVRNPWGKREWIGDWGDKSEKWSDSVRAELGWSEKNDGTFWM
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mRNA from alignment at Ecto-sp8_S_contig103317:1..299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103317.536.1 ID=mRNA_Ecto-sp8_S_contig103317.536.1|Name=mRNA_Ecto-sp8_S_contig103317.536.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=299bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103317:1..299- (Ectocarpus species8 EcLAC_412)
TCTGGACAGCCTATTCGGCTTGTGAGAGTCCGCAACCCTTGGTGAGCCCG
GGGAGTGTCTGGTGCGCGGCCGCCTGTGACCGTTTTCGTACGCACGGACA
AAGAGGCCAGGTCCGTACCATACTCCACTTGGTGTGCATCTGACCAATAG
CTGTTGTTGGTAAATCTGTGTGCATGCTGTTGTTGAAAAGGGGGAAGCGC
GAGTGGATTGGGGATTGGGGCGACAAGTCGGAGAAGTGGAGCGACAGCGT
CCGAGCGGAGCTTGGCTGGAGCGAGAAGAATGACGGCACCTTTTGGATG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103317:1..299-

>mRNA_Ecto-sp8_S_contig103317.536.1 ID=mRNA_Ecto-sp8_S_contig103317.536.1|Name=mRNA_Ecto-sp8_S_contig103317.536.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103317:1..299- (Ectocarpus species8 EcLAC_412)
TCTGGACAGCCTATTCGGCTTGTGAGAGTCCGCAACCCTTGGGGGAAGCG
CGAGTGGATTGGGGATTGGGGCGACAAGTCGGAGAAGTGGAGCGACAGCG
TCCGAGCGGAGCTTGGCTGGAGCGAGAAGAATGACGGCACCTTTTGGATG
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