mRNA_Ecto-sp8_S_contig10331.535.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10331.535.1
Unique NamemRNA_Ecto-sp8_S_contig10331.535.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10331.535.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.260e-56
Identity = 263/305 (86.23%), Postives = 266/305 (87.21%), Query Frame = 1 
Query:    1 HQQLAPATAGETTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSSSLEVKVEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAKDAHGKQAVDMVGAGRRIPQGLRFDIINTLERYQMGEYAIAR 915
            + +LAPATAGETTA                  X XXXXXXXXX               P SSLEVKVEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PSAKDAHGKQAVDMVGAGRRIPQGL+FDIINTLERYQMGEY IAR
Sbjct:   23 NNELAPATAGETTAAAAPAGLEGAPPAQQVAAXGXXXXXXXXXATRV-----------PPSSLEVKVEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAVDMVGAGRRIPQGLKFDIINTLERYQMGEYGIAR 316
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BLAST of mRNA_Ecto-sp8_S_contig10331.535.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.340e-20
Identity = 170/194 (87.63%), Postives = 171/194 (88.14%), Query Frame = 1 
Query:  334 MGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAKDAHGKQAVDMVGAGRRIPQGLRFDIINTLERYQMGEYAIAR 915
            MGHTNVVKLLVEEHRAAVDARD                     LLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PSAKDAHGKQA+DMVGAGRRIPQGLRFDIINTLERYQMGEYAIAR
Sbjct:    1 MGHTNVVKLLVEEHRAAVDARDGALCTPLHAASEGGHPVVVELLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAIDMVGAGRRIPQGLRFDIINTLERYQMGEYAIAR 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10331.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JD62_9PHAE1.260e-5686.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLZ4_ECTSI1.340e-2087.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10331contigEcto-sp8_S_contig10331:2525..6878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.8
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog2880.D8LLZ4
Model size915
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size915
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10331.535.1prot_Ecto-sp8_S_contig10331.535.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10331 2525..6878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.8262444-CDS-Ecto-sp8_S_contig10331:2524..27581681143131.8262444-CDS-Ecto-sp8_S_contig10331:2524..2758Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10331 2525..2758 +
1681143131.8430843-CDS-Ecto-sp8_S_contig10331:3505..36071681143131.8430843-CDS-Ecto-sp8_S_contig10331:3505..3607Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10331 3506..3607 +
1681143131.8531044-CDS-Ecto-sp8_S_contig10331:4213..44101681143131.8531044-CDS-Ecto-sp8_S_contig10331:4213..4410Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10331 4214..4410 +
1681143131.8631935-CDS-Ecto-sp8_S_contig10331:5439..55931681143131.8631935-CDS-Ecto-sp8_S_contig10331:5439..5593Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10331 5440..5593 +
1681143131.8738034-CDS-Ecto-sp8_S_contig10331:6019..61421681143131.8738034-CDS-Ecto-sp8_S_contig10331:6019..6142Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10331 6020..6142 +
1681143131.8833354-CDS-Ecto-sp8_S_contig10331:6773..68781681143131.8833354-CDS-Ecto-sp8_S_contig10331:6773..6878Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10331 6774..6878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10331.535.1

>prot_Ecto-sp8_S_contig10331.535.1 ID=prot_Ecto-sp8_S_contig10331.535.1|Name=mRNA_Ecto-sp8_S_contig10331.535.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=305bp
HQQLAPATAGETTAAAADASSSNQDGAAPAGLEGAPPAQQGAAGGGAGGA
AGGAARVPPSSSLEVKVEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDE
LGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDGALCTPLHAASEGGHPV
VVELLLRLGAEVDARNGKLQTPLHYACGYGQMEAAQQLVIRGASVGAQDA
KGNTPLHLACGLAGTDVVRLLLAHGSPLSALNDRRRHPLHLACRGGHLEV
VITLLEYGADPSAKDAHGKQAVDMVGAGRRIPQGLRFDIINTLERYQMGE
YAIAR
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mRNA from alignment at Ecto-sp8_S_contig10331:2525..6878+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10331.535.1 ID=mRNA_Ecto-sp8_S_contig10331.535.1|Name=mRNA_Ecto-sp8_S_contig10331.535.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4354bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10331:2525..6878+ (Ectocarpus species8 EcLAC_412)
CACCAGCAGCTAGCGCCGGCTACAGCAGGAGAGACGACTGCTGCTGCTGC
CGACGCTAGTTCGTCGAATCAGGATGGTGCCGCTCCCGCCGGCCTGGAGG
GGGCGCCGCCAGCCCAGCAGGGGGCGGCGGGGGGGGGAGCAGGGGGCGCG
GCGGGGGGGGCTGCGCGGGTTCCGCCGTCTTCGTCGTTAGAGGTGAAGGT
GGAAGAGAGCGAGATTCACCACTACGCCCAAGCGGTGAGTGAGAGGGGAG
ACGTGGCTGGGTTGTTTGGTGTGTGGGTGTCAAGGTGTTGGGGGCCCCGT
TGCGTTGTATGTATGTTTCGATTGATTGGATTGATTTGACGGTTCTCGTT
CTGTTGTTTTGAGTGTGTGGGTAAACTTGTGACGGTTTTCTCTCTTTTTT
CTTCTCCTCTCTTCATGTGGGCATGCACATGTCCCTCTGGTCGCTTGCTG
TGTCTGTTGTTGTAGTTGGTGGTGCGTGTACTGTGGGCAACATTTTGGGT
GTGATATTTCGCTATTTCGCTTCTCCACCCTGGATGGAATGACGAGAAGG
AACGGTCCGGAATTGACGCCTGCCGATCGGTGGGTTTCAGCACCACCACC
ACCTGGGTGTCTGAAGAACAAAAATCCGGCCGGGCCACCCTTCCCATTAA
TAGTATGCTTTTTATTTTTCCTTTGCCCCCCGACCATTACATTGGCCGGC
GAAATTCAACACCTGGTTTCCTGCTCTGCCAGCGTACATATACATGTTTG
CTGACTTCGGAGTATGGTATTTTGTTTTTCGTGTGTTGTGTTTGTATTGT
TGTTGACTATTTTGCAGGGAGACGTTCGAAGGTGTCTTGCTGACTTGTGT
GTTGTGTTTGGTGTGTTGTTGGCTACCTTTTTTGCAGAGAGACGTTCACA
GGTGTCTTTGCTGGCTTGGGGATTGGTTTTTCATCTCTCTTGTGTGTTGT
GTTTTTTCTTTTGTCCTTGGTTGTTTTGCAGGGCGATGTGGAGGAGGTTC
GAAGGTGTCTGCTGGCGGGATTCAACAAGGTTGACGAGGTTGACGAGCTG
GGCTGCACTCCAGTACACCTGGCGGGGGCAATGGTGAGAGACCGACGATT
GATATTATTGTAGTAGAGAACGCACAGAGAATGACAGACAGGGAGAATGA
GATGAAGAGGTAGAGCGAGCAAGAGAGGGAGACAGACAGACAGATCGACA
ACGAGAGAGGGGGAGATAGAGCGCGCAAGAGAGGCAGACAGACAGACAGA
CAGACAGACAGATGCTGTGGACTGGTTCCTGGCAGGACTTGCCGAGACCG
TACATAGTATACCTTCCGTTGTACTTCTTTTTAAGTGCTCAAGACATACA
CCATCATATTGGCATTTTTTGTCCCGCTTTGCCATCTTGTCATTAGTCAG
CCGATTTTTGCTCGGTCGATGCTAGCTAAAGAACCGCACACACACGCAGG
GCAAGGTTAATGCTAGTTGAAACACACGAAATAATGCCTCCCCCCAAAAA
ATCATTGGAACGAAAAAAAATAGTTGCCCAAAACGTTGGGCTTGCTTGTA
AGGGAAACGAACGGCACTCCTTCGTCTCCACAGGAATGCGCAGTCGGTTG
TCGAACGATCAAGGCAAGAAAAGCCCAAACCACGCACGCTTGACCCCCCC
TCTACCGCCCTTCACCGCACCCCCGGTTGTCGAGAAAAGGGCCACACGAA
CGTGGTCAAGCTGCTGGTGGAGGAACACCGGGCCGCCGTGGACGCGAGGG
ACGGCGCTCTGTGCACCCCCCTTCACGCCGCTAGCGAGGGGGGGCACCCC
GTGGTCGTGGAGCTCCTGCTGCGCCTTGGGGCAGAGGTGGACGCCAGGAA
CGGCAAGCTGCAGACGCCGCTCCACTACGCTTGCGGGTGAGTCAGTCAGT
GTGGGTGGGTGTTTTGTGTGTGCACGGCGGTTGTTTCTTTTTAGGGTGGC
AGCGACCGCGCAGGCTGAAAGTGCATCAATCGTGTTGTGTGTAAGCGGGA
TTATATACATATGCAAGAGAGAGGAAGGTGCCCGTAGTTTTGTGATTGGC
CGATTGTTTTCGAAAGGAAATTTCTGGTTGGCGAAGAACCCCTGGTCGAC
CCGCGAGAATCAACCCAGCGGCCCGTTCCTGGGCATGTCCGCGGTTTTGT
GCAAGGAGAGACCATCGACCACAAACCGTTCGTGGTGGACGTCGATGACT
CACGAACCGTTCATGGTGGATGGTCCCTCCTGGCACAAATCCGCCGACAA
GCCCAAGAACGGGGCGAGCGATATGCGATGGTTGAAGTTTCCTTTTTGAA
TAAGAATCGGCCAATCAGAAAACTGTGAGAGTGAACCTCGTGTGTGTGTG
TTTTTTGTGTGTTTCTTTGGTTACCATTGGTCGCGCTAATTGACCGACTG
AGCAATGGAGAGACAGGAGCCAGTCTCGCAGCGGGGTAAAAAGCAAGAAT
AATGATTTCTCGTCAGCGCGCCCCCTTCCGACAAGAGGAGCCGCGGACGA
GGTTGGACGGCAGGGAAGGGTCCAGCCTTCGAATTCGAAGTGTGTAAGAC
ACGGTTATGTACCGCTCATACTATCTCAGACGTTCGTTGTTTTCACTCTC
CCCTTGAGAATCGAGCTTCGGGTGCGCGCGTTCCCAACATACACCTAATC
TCGATGTAGCTCACCCCCGTCCCCCCAACCCCAAGACCTACGTAGGTCCC
CATAGCGCTCCCCCTTCCCTTTTGCTTCCCTCGTTTTGCCCTCTCGCCGC
ACCGCATCTATACCCCGACCCTTACCACGACACCCCTCCCTCCCTTCTTC
TTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
ACTGTGTACTGGGGCGCGGCACACGGCGGTGGTACGGTTTGCTGCTGACC
GTGACCGCGACACAGCTACGGGCAGATGGAAGCCGCGCAGCAGCTGGTGA
TCCGCGGGGCGTCGGTCGGGGCGCAAGACGCCAAGGGAAACACGCCTCTG
CACCTAGCGTGCGGCTTGGCGGGGACCGACGTGGTGCGGCTGCTGCTGGC
GCACGGTTCCCCTCTCAGCGTGAGTTCTTTCATTTTTTTGCTTCACCTTG
ACTATTTTTGTTGCTATTGTAGCACAGAGAGGTTTATTTACCATGTGAAT
TACTGCTACGCACAGGGCTAGGAGAGGTTGTTGTCGCGTGCAACCTCGAA
AGAATGTGGAGACTATCGTAATCCAAAACACACCTATGCTTATTTTTTTT
TTGTATGCTAGTCGTCCGGTGTAACGGACTGGCTGGTTCGAAGGTTGATC
GCGGTCTCCCACGAGTTTACCTCTTTTTTTTTTGCATCATGCGGCTGCTG
TCCTCTCTGTGTTGTCAATCGACCGCGGATGTCGGCGGGTGCCTCGCTTC
TCCGCGTGGAATCAACCAACCAACCAATATGCAAATCAACCAATCATTCA
ATCAATCAATCCACCGGACTGGTACCACCCACCGGTCGACCTCAGGCGCT
CAACGACCGCCGTCGGCATCCGTTGCACCTGGCGTGTCGGGGTGGGCACC
TGGAGGTGGTCATCACTCTGCTGGAGTACGGCGCCGACCCGTCGGCAAAG
GATGCACACGGAAAACAGGTCCGTCTGTGGTCGCGCGTACAGGGTGCCTT
ACAAAGTAGAGCGACTTTCGCACATGAAGTGCAAACAGCGCGATGTGAAC
GGAACCGGATGTGACATTAGGTACACATCACACCCGGTCCCTGGGCCAAA
CCTTCATTACTGTACGCCACAACCAGTAGTAGTGCCGAAACTGGTGGCGT
TGGATGGATAACTTACTGTCCAGAGCTTTCCGAAAGCGTGGCGTTTGGCT
TGTCCATGCTCTACGCCGTGAAGTAATCGAGCCCTTTTAAATTCGGTCCG
GGGTGTGTGATATCTTACGTCTTGTACAGTATGTGCCAGGCCGATTTCGC
CCCGCCCTTAGTAGCGGGCACAACACCGATATTCCGTCGGTGCCAACAAT
ATCCTGTCCGTGTCGAGAGACTGCACCCGCCCTATATGCAACCGGCCACC
CGCCAGATAAAGGTCCGCCAACCGTTGAGTACCGTTGTCCCTTCTCGGCG
TGGCCTTCTCGTCGTGGTGGGGGGCTTTCCGTCTATTGCTCCTCCGTACT
GTAATGTGATGATTTCTTCCCCACTTCACCGCCTACTCCACCCTTCCTCT
ACACCTACGTACGTGAATTGGTTGGTGGGGGTTTCTAATGCTTTGGCAGG
CTGTCGACATGGTCGGGGCCGGGCGGCGCATCCCACAGGGGCTGAGGTTT
GACATCATCAATACGCTGGAGAGGTACCAGATGGGCGAGTACGCGATTGC
GAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10331:2525..6878+

>mRNA_Ecto-sp8_S_contig10331.535.1 ID=mRNA_Ecto-sp8_S_contig10331.535.1|Name=mRNA_Ecto-sp8_S_contig10331.535.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10331:2525..6878+ (Ectocarpus species8 EcLAC_412)
CACCAGCAGCTAGCGCCGGCTACAGCAGGAGAGACGACTGCTGCTGCTGC
CGACGCTAGTTCGTCGAATCAGGATGGTGCCGCTCCCGCCGGCCTGGAGG
GGGCGCCGCCAGCCCAGCAGGGGGCGGCGGGGGGGGGAGCAGGGGGCGCG
GCGGGGGGGGCTGCGCGGGTTCCGCCGTCTTCGTCGTTAGAGGTGAAGGT
GGAAGAGAGCGAGATTCACCACTACGCCCAAGCGGGCGATGTGGAGGAGG
TTCGAAGGTGTCTGCTGGCGGGATTCAACAAGGTTGACGAGGTTGACGAG
CTGGGCTGCACTCCAGTACACCTGGCGGGGGCAATGGGCCACACGAACGT
GGTCAAGCTGCTGGTGGAGGAACACCGGGCCGCCGTGGACGCGAGGGACG
GCGCTCTGTGCACCCCCCTTCACGCCGCTAGCGAGGGGGGGCACCCCGTG
GTCGTGGAGCTCCTGCTGCGCCTTGGGGCAGAGGTGGACGCCAGGAACGG
CAAGCTGCAGACGCCGCTCCACTACGCTTGCGGCTACGGGCAGATGGAAG
CCGCGCAGCAGCTGGTGATCCGCGGGGCGTCGGTCGGGGCGCAAGACGCC
AAGGGAAACACGCCTCTGCACCTAGCGTGCGGCTTGGCGGGGACCGACGT
GGTGCGGCTGCTGCTGGCGCACGGTTCCCCTCTCAGCGCGCTCAACGACC
GCCGTCGGCATCCGTTGCACCTGGCGTGTCGGGGTGGGCACCTGGAGGTG
GTCATCACTCTGCTGGAGTACGGCGCCGACCCGTCGGCAAAGGATGCACA
CGGAAAACAGGCTGTCGACATGGTCGGGGCCGGGCGGCGCATCCCACAGG
GGCTGAGGTTTGACATCATCAATACGCTGGAGAGGTACCAGATGGGCGAG
TACGCGATTGCGAGG
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