mRNA_Ecto-sp8_S_contig10327.531.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: D8LEE1_ECTSI (NADH:ubiquinone oxidoreductase complex I n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE1_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 2.000e-160 Identity = 240/243 (98.77%), Postives = 242/243 (99.59%), Query Frame = 2
Query: 2 NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKKPE 730
NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDE VRLQMGQGDTLSGRVSREEVG+TVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLV+DEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKKPE
Sbjct: 361 NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDESVRLQMGQGDTLSGRVSREEVGSTVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLVLDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKKPE 603
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A836CBF4_9STRA (NADH:ubiquinone oxidoreductase complex I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF4_9STRA) HSP 1 Score: 228 bits (582), Expect = 2.130e-65 Identity = 126/242 (52.07%), Postives = 159/242 (65.70%), Query Frame = 2
Query: 5 APRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATG--KTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKK 724
AP V++GP+G KM S+G+VLSRF +NEY N K G F LD+ I LY+ RP VLVSSA AER +RLT EER DIPIV LNP GILNWK+KAET+LR S + + +VRA GL+ G +GD LQ+GQ D SGR++R E+ VAA L+S ++ GKTFE+RRDE+EDA G P + LV D DR++ + LPPF +DPPPP Q IL+DPRV+A+ A K
Sbjct: 315 APPVDKGPSGTKMSSIGIVLSRFEYNEYANYKCKPGPFSLDVRAIELYRHARPAVVLVSSAGAERVNRLTAEERAKDIPIVQLNPQGILNWKFKAETALRTSGVPYAIVRAAGLLP-GAKGDGPRLLQLGQADRFSGRITRAELAKAVAATLNSPHATGKTFEVRRDESEDAAGVDPLPTLPAQLAALVPDRDRAVRA-------LPPFPAARDPPPPPDAAGVQAILSDPRVRAQQARDGK 548
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: K8YU42_NANGC (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YU42_NANGC) HSP 1 Score: 225 bits (573), Expect = 6.230e-63 Identity = 129/240 (53.75%), Postives = 163/240 (67.92%), Query Frame = 2
Query: 26 PAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDE--LVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDAT-----GKTPDFTS-----LFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKAR 706
P+ +SLGLV SRF FN NP Y GAF L L EI+LY+ RP+ VLVSSA AER ++ TEE+RK +IPIV LNPGGILNWKY+AET LR S L + ++R GL+ E GDE +LQ GQGDT++GR++R+++G VAAAL+S YSAGKT E+RRDEA DA G+ P T+ LF+ LV D+DR+++ G L PF DPP V+ ER +EILNDPRVKA+
Sbjct: 415 PSSQAAVSLGLVYSRFEFNRQANPYYDPGAFSLSLEEIALYRSRRPSLVLVSSAGAERNAKVETEEDRKTEIPIVMLNPGGILNWKYRAETYLRASPLPYTILRPCGLVPEKAFGDEPSTGKLQAGQGDTITGRLTRQDLGLAVAAALASPYSAGKTMEIRRDEAADANAMTGVGRRPRTTAVTALELFQPLVADKDRAVSGTSG----LLPFPEAVDPPQEVSPERAKEILNDPRVKAQ 650
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A6U1NS47_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NS47_9STRA) HSP 1 Score: 195 bits (496), Expect = 8.310e-56 Identity = 109/229 (47.60%), Postives = 146/229 (63.76%), Query Frame = 2
Query: 2 NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELV-RLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEIL 682
N+PR+ E K SL L+ SRF +N PNP+Y G+F LD+ I+++++ RP+ V +SSA+AERY L E+RK DIPIV LNPGGILNWKYKAE +R S L + V+R GL+ + ++ V R+Q+ QGD++SGR+SR ++ A LSSS + TFELRRDEAEDA GK + L R LV D R L PF + QDPP P++EE Q+I+
Sbjct: 40 NSPRIEELDGSYKFSSLTLIYSRFEYNRAPNPRYNEGSFCLDIASINMFREQRPSVVYISSAAAERYQTLEAPEQRKADIPIVQLNPGGILNWKYKAEEEVRSSGLTYSVLRPCGLMPDQIAQEKPVCRMQVFQGDSVSGRLSRSDLAECATACLSSSSAIDTTFELRRDEAEDAVGKKSSWPHLLRPLVGDSMR-------VERGLLPFPMAQDPPEPLSEEEVQQIV 261
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A4D9DB39_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB39_9STRA) HSP 1 Score: 203 bits (517), Expect = 2.750e-55 Identity = 129/284 (45.42%), Postives = 163/284 (57.39%), Query Frame = 2
Query: 26 PAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYK--------------------------------------------AETSLRKSSLRHCVVRATGLIAEGKEGDE--LVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDAT-----GKTPDFTS-----LFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKAR 706
P+ +SLGLV SRF FN NP Y GAF L L EI+LY+ RP+ VLVSSA AER ++ TEE+RK +IPIV LNPGGILNWKY+ AET LR S L + ++R GL+ E GDE +LQ GQGDT++GR++R+++G VAAAL+S YSAGKT E+RRDEA DA G+ P T+ LF+ LV D+DR+++ G L PF DPP V+ ER +EILNDPRVKA+
Sbjct: 318 PSSQAAVSLGLVYSRFEFNRQANPYYDPGAFSLSLEEIALYRSRRPSLVLVSSAGAERNAKVETEEDRKTEIPIVMLNPGGILNWKYRSVQRDRERKREDGRPDVVCAVESPACAFASVFFNTPLLFSSFPSAETYLRASPLPYIILRPCGLVPEKAFGDEPSTGKLQAGQGDTITGRLTRQDLGLAVAAALASPYSAGKTMEIRRDEAADANAMTGVGRRPRTTAVTALELFQTLVADKDRAVSGTSG----LFPFPEAVDPPQEVSPERAKEILNDPRVKAQ 597
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A2V0P7E0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7E0_9CHLO) HSP 1 Score: 188 bits (477), Expect = 1.840e-49 Identity = 113/237 (47.68%), Postives = 135/237 (56.96%), Query Frame = 2
Query: 32 GGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHRLTE--EERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGK---TPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKK 724
G + LGLVLSRF FN+ PNP Y G F L + + Y+ PRP VL+SSA ER + + E RK IPIV LNPGG+LNWKY+AE + R S +CVVRATGL E L+ QGDT+SGRVSR E ++AAL++ +AGKTFELRR EA D G LF L D +R LPPF PP P TEERK EIL DPRV A A ++
Sbjct: 387 GDSISKLGLVLSRFEFNKMPNPAYHPGPFTLSIAGGVGAYRAPRPQLVLLSSAGVERNAVIGDDTEARKRSIPIVQLNPGGVLNWKYEAECAARASGFPYCVVRATGLDDGSPAASESRLLEADQGDTMSGRVSRAETALVISAALTNPEAAGKTFELRRSEAADGAGAGNGPRQLNRLFLKLAPDANRWRVG-------LPPFPRAVPPPAPPTEERKAEILADPRVAAAAARDRQ 616
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: E1Z5W0_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z5W0_CHLVA) HSP 1 Score: 186 bits (472), Expect = 1.340e-48 Identity = 114/234 (48.72%), Postives = 142/234 (60.68%), Query Frame = 2
Query: 38 KMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHRL--TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKT---PDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASK 721
++ GLV SRF FN +PNP+Y AG F+L + I Y+ RP ++VSSA ER ++ EE RK DIPIV LNPGG+LN KY E ++R S L + V+R TGL E + GD L L+ GQGD +SGR+SREE+ T V AAL + +AGKT ELRR E+ DA GK D LF G EDR G L PF PP PV+EERK+EIL+D RV AA +
Sbjct: 375 RIRQFGLVYSRFDFNGFPNPRYRAGKFELAIEGGIRAYRDARPQLLMVSSAGVERNAKVGNDEEARKKDIPIVQLNPGGVLNHKYTGEAAVRASGLAYSVLRPTGLTNESEPGDFL--LEAGQGDRISGRISREELSTVVVAALGTPAAAGKTLELRRQESADAAGKKMSQQDKLRLFLGAA--EDRLRQRVG-----LEPFPAPVAPPAPVSEERKKEILSDVRVIKSVAAGR 599
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A0D2N0U4_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N0U4_9CHLO) HSP 1 Score: 184 bits (466), Expect = 1.950e-48 Identity = 114/232 (49.14%), Postives = 140/232 (60.34%), Query Frame = 2
Query: 26 PAGGKMLS-LGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHRLTE--EERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTP---DFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVK 700
P G+ +S LGLVLSRF FN+ PNP+Y G F+L + +S Y+ PRP +++SSA ER + + E RK DIPIV LNPGG+LNWK++AE R S + VVR TGL E L+ QGD++SG+VSR EV VAAAL+S +A KTFELRR+EA DA GKT T LF L +D R L PF PP P TEERK EIL DPRV+
Sbjct: 296 PLRGEAISKLGLVLSRFEFNKMPNPRYHPGPFELTIGGGLSAYRDPRPQLLVISSAGVERNAIIGDDAEARKKDIPIVQLNPGGVLNWKFEAECVARASGFPYSVVRCTGLDDGSAAAAEPRLLEADQGDSISGKVSRAEVALVVAAALASPDAANKTFELRRNEAVDAKGKTTGPRQLTRLFLKLALDSHRWRVG-------LQPFPRAVPPPAPPTEERKAEILADPRVQ 520
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A7S0DGB1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGB1_9EUKA) HSP 1 Score: 179 bits (453), Expect = 5.990e-46 Identity = 105/226 (46.46%), Postives = 141/226 (62.39%), Query Frame = 2
Query: 47 SLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATG----KTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPP-PPVTEERKQEILNDPRVKAR 706
S+ +V+S+F FN PNP F+L + IS KP+P VL++SA+ ER R+ T+EER+N+IPIV LNP GILNWKYK E LR+S L + V+R TGL + D + L+ QGD++SG +SR+E+ + L+SS S GKT ELRR E+ DA G +GLV D DR A LP+ P A+ DPP P+TE+ K+E+LNDPRVKA+
Sbjct: 418 SMNIVISKFEFNGMPNPNGIPTDFELRVDSISKVAKPKPQIVLITSAAVERNARIETKEERENEIPIVKLNPNGILNWKYKGENVLRESGLEYAVIRPTGLTTQNMTTDYALDLK--QGDSMSGSISRKEIAALTSLCLTSSCSTGKTMELRRSESRDALGVPGTNRKVLLGQLQGLVRDSDRFTAG-----LPVLPRAV--DPPVEPLTEKEKEEVLNDPRVKAQ 634
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A2P6TPM0_CHLSO (Nadh:ubiquinone oxidoreductase complex i intermediate-associated 30 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TPM0_CHLSO) HSP 1 Score: 172 bits (435), Expect = 2.250e-43 Identity = 105/226 (46.46%), Postives = 132/226 (58.41%), Query Frame = 2
Query: 38 KMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHR--LTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTP---DFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRV 697
++ GLVLSRF FN + NP Y G F+L + I Y+ PRP ++VSSA ER + L EE RK DIPIV LNPG +LN KY E ++R + L +CV+R TGL E + G+ L L+ QGD ++GR+SREE+ + AAL +A KT ELRR EA DA K D LF GLV D+ R L PF PPVT+ERK+EIL D RV
Sbjct: 376 RIRQFGLVLSRFEFNGFANPAYRPGPFELRIEGGIRAYRDPRPQLIMVSSAGVERNAKIGLDEEARKKDIPIVQLNPGAVLNHKYSGENAVRAAGLPYCVLRPTGLTNESEPGEFL--LEASQGDRITGRISREELASLAVAALGLPSAAQKTMELRRQEATDAADKAMTDLDNLRLFLGLVQDKHRQRVG-------LEPFPAPXXXXPPVTDERKKEILADVRV 592 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10327.531.1 >prot_Ecto-sp8_S_contig10327.531.1 ID=prot_Ecto-sp8_S_contig10327.531.1|Name=mRNA_Ecto-sp8_S_contig10327.531.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=231bp MLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASback to top mRNA from alignment at Ecto-sp8_S_contig10327:3309..6892- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10327.531.1 ID=mRNA_Ecto-sp8_S_contig10327.531.1|Name=mRNA_Ecto-sp8_S_contig10327.531.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3584bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10327:3309..6892- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10327:3309..6892- >mRNA_Ecto-sp8_S_contig10327.531.1 ID=mRNA_Ecto-sp8_S_contig10327.531.1|Name=mRNA_Ecto-sp8_S_contig10327.531.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10327:3309..6892- (Ectocarpus species8 EcLAC_412)back to top |