mRNA_Ecto-sp8_S_contig10327.531.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10327.531.1
Unique NamemRNA_Ecto-sp8_S_contig10327.531.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: D8LEE1_ECTSI (NADH:ubiquinone oxidoreductase complex I n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE1_ECTSI)

HSP 1 Score: 475 bits (1222), Expect = 2.000e-160
Identity = 240/243 (98.77%), Postives = 242/243 (99.59%), Query Frame = 2
Query:    2 NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKKPE 730
            NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDE VRLQMGQGDTLSGRVSREEVG+TVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLV+DEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKKPE
Sbjct:  361 NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDESVRLQMGQGDTLSGRVSREEVGSTVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLVLDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKKPE 603          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A836CBF4_9STRA (NADH:ubiquinone oxidoreductase complex I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF4_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.130e-65
Identity = 126/242 (52.07%), Postives = 159/242 (65.70%), Query Frame = 2
Query:    5 APRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATG--KTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKK 724
            AP V++GP+G KM S+G+VLSRF +NEY N K   G F LD+  I LY+  RP  VLVSSA AER +RLT EER  DIPIV LNP GILNWK+KAET+LR S + + +VRA GL+  G +GD    LQ+GQ D  SGR++R E+   VAA L+S ++ GKTFE+RRDE+EDA G    P   +    LV D DR++ +       LPPF   +DPPPP      Q IL+DPRV+A+ A   K
Sbjct:  315 APPVDKGPSGTKMSSIGIVLSRFEYNEYANYKCKPGPFSLDVRAIELYRHARPAVVLVSSAGAERVNRLTAEERAKDIPIVQLNPQGILNWKFKAETALRTSGVPYAIVRAAGLLP-GAKGDGPRLLQLGQADRFSGRITRAELAKAVAATLNSPHATGKTFEVRRDESEDAAGVDPLPTLPAQLAALVPDRDRAVRA-------LPPFPAARDPPPPPDAAGVQAILSDPRVRAQQARDGK 548          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: K8YU42_NANGC (Nadh:ubiquinone oxidoreductase complex i intermediate-associated protein 30 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YU42_NANGC)

HSP 1 Score: 225 bits (573), Expect = 6.230e-63
Identity = 129/240 (53.75%), Postives = 163/240 (67.92%), Query Frame = 2
Query:   26 PAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDE--LVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDAT-----GKTPDFTS-----LFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKAR 706
            P+    +SLGLV SRF FN   NP Y  GAF L L EI+LY+  RP+ VLVSSA AER  ++ TEE+RK +IPIV LNPGGILNWKY+AET LR S L + ++R  GL+ E   GDE    +LQ GQGDT++GR++R+++G  VAAAL+S YSAGKT E+RRDEA DA      G+ P  T+     LF+ LV D+DR+++   G    L PF    DPP  V+ ER +EILNDPRVKA+
Sbjct:  415 PSSQAAVSLGLVYSRFEFNRQANPYYDPGAFSLSLEEIALYRSRRPSLVLVSSAGAERNAKVETEEDRKTEIPIVMLNPGGILNWKYRAETYLRASPLPYTILRPCGLVPEKAFGDEPSTGKLQAGQGDTITGRLTRQDLGLAVAAALASPYSAGKTMEIRRDEAADANAMTGVGRRPRTTAVTALELFQPLVADKDRAVSGTSG----LLPFPEAVDPPQEVSPERAKEILNDPRVKAQ 650          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A6U1NS47_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NS47_9STRA)

HSP 1 Score: 195 bits (496), Expect = 8.310e-56
Identity = 109/229 (47.60%), Postives = 146/229 (63.76%), Query Frame = 2
Query:    2 NAPRVNEGPAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELV-RLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEIL 682
            N+PR+ E     K  SL L+ SRF +N  PNP+Y  G+F LD+  I+++++ RP+ V +SSA+AERY  L   E+RK DIPIV LNPGGILNWKYKAE  +R S L + V+R  GL+ +    ++ V R+Q+ QGD++SGR+SR ++     A LSSS +   TFELRRDEAEDA GK   +  L R LV D  R           L PF + QDPP P++EE  Q+I+
Sbjct:   40 NSPRIEELDGSYKFSSLTLIYSRFEYNRAPNPRYNEGSFCLDIASINMFREQRPSVVYISSAAAERYQTLEAPEQRKADIPIVQLNPGGILNWKYKAEEEVRSSGLTYSVLRPCGLMPDQIAQEKPVCRMQVFQGDSVSGRLSRSDLAECATACLSSSSAIDTTFELRRDEAEDAVGKKSSWPHLLRPLVGDSMR-------VERGLLPFPMAQDPPEPLSEEEVQQIV 261          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A4D9DB39_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DB39_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.750e-55
Identity = 129/284 (45.42%), Postives = 163/284 (57.39%), Query Frame = 2
Query:   26 PAGGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYK--------------------------------------------AETSLRKSSLRHCVVRATGLIAEGKEGDE--LVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDAT-----GKTPDFTS-----LFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKAR 706
            P+    +SLGLV SRF FN   NP Y  GAF L L EI+LY+  RP+ VLVSSA AER  ++ TEE+RK +IPIV LNPGGILNWKY+                                            AET LR S L + ++R  GL+ E   GDE    +LQ GQGDT++GR++R+++G  VAAAL+S YSAGKT E+RRDEA DA      G+ P  T+     LF+ LV D+DR+++   G    L PF    DPP  V+ ER +EILNDPRVKA+
Sbjct:  318 PSSQAAVSLGLVYSRFEFNRQANPYYDPGAFSLSLEEIALYRSRRPSLVLVSSAGAERNAKVETEEDRKTEIPIVMLNPGGILNWKYRSVQRDRERKREDGRPDVVCAVESPACAFASVFFNTPLLFSSFPSAETYLRASPLPYIILRPCGLVPEKAFGDEPSTGKLQAGQGDTITGRLTRQDLGLAVAAALASPYSAGKTMEIRRDEAADANAMTGVGRRPRTTAVTALELFQTLVADKDRAVSGTSG----LFPFPEAVDPPQEVSPERAKEILNDPRVKAQ 597          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A2V0P7E0_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7E0_9CHLO)

HSP 1 Score: 188 bits (477), Expect = 1.840e-49
Identity = 113/237 (47.68%), Postives = 135/237 (56.96%), Query Frame = 2
Query:   32 GGKMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHRLTE--EERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGK---TPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASKK 724
            G  +  LGLVLSRF FN+ PNP Y  G F L +   +  Y+ PRP  VL+SSA  ER   + +  E RK  IPIV LNPGG+LNWKY+AE + R S   +CVVRATGL        E   L+  QGDT+SGRVSR E    ++AAL++  +AGKTFELRR EA D  G          LF  L  D +R           LPPF     PP P TEERK EIL DPRV A  A  ++
Sbjct:  387 GDSISKLGLVLSRFEFNKMPNPAYHPGPFTLSIAGGVGAYRAPRPQLVLLSSAGVERNAVIGDDTEARKRSIPIVQLNPGGVLNWKYEAECAARASGFPYCVVRATGLDDGSPAASESRLLEADQGDTMSGRVSRAETALVISAALTNPEAAGKTFELRRSEAADGAGAGNGPRQLNRLFLKLAPDANRWRVG-------LPPFPRAVPPPAPPTEERKAEILADPRVAAAAARDRQ 616          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: E1Z5W0_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z5W0_CHLVA)

HSP 1 Score: 186 bits (472), Expect = 1.340e-48
Identity = 114/234 (48.72%), Postives = 142/234 (60.68%), Query Frame = 2
Query:   38 KMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHRL--TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKT---PDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVKARTAASK 721
            ++   GLV SRF FN +PNP+Y AG F+L +   I  Y+  RP  ++VSSA  ER  ++   EE RK DIPIV LNPGG+LN KY  E ++R S L + V+R TGL  E + GD L  L+ GQGD +SGR+SREE+ T V AAL +  +AGKT ELRR E+ DA GK     D   LF G    EDR     G     L PF     PP PV+EERK+EIL+D RV    AA +
Sbjct:  375 RIRQFGLVYSRFDFNGFPNPRYRAGKFELAIEGGIRAYRDARPQLLMVSSAGVERNAKVGNDEEARKKDIPIVQLNPGGVLNHKYTGEAAVRASGLAYSVLRPTGLTNESEPGDFL--LEAGQGDRISGRISREELSTVVVAALGTPAAAGKTLELRRQESADAAGKKMSQQDKLRLFLGAA--EDRLRQRVG-----LEPFPAPVAPPAPVSEERKKEILSDVRVIKSVAAGR 599          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A0D2N0U4_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N0U4_9CHLO)

HSP 1 Score: 184 bits (466), Expect = 1.950e-48
Identity = 114/232 (49.14%), Postives = 140/232 (60.34%), Query Frame = 2
Query:   26 PAGGKMLS-LGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHRLTE--EERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTP---DFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRVK 700
            P  G+ +S LGLVLSRF FN+ PNP+Y  G F+L +   +S Y+ PRP  +++SSA  ER   + +  E RK DIPIV LNPGG+LNWK++AE   R S   + VVR TGL        E   L+  QGD++SG+VSR EV   VAAAL+S  +A KTFELRR+EA DA GKT      T LF  L +D  R           L PF     PP P TEERK EIL DPRV+
Sbjct:  296 PLRGEAISKLGLVLSRFEFNKMPNPRYHPGPFELTIGGGLSAYRDPRPQLLVISSAGVERNAIIGDDAEARKKDIPIVQLNPGGVLNWKFEAECVARASGFPYSVVRCTGLDDGSAAAAEPRLLEADQGDSISGKVSRAEVALVVAAALASPDAANKTFELRRNEAVDAKGKTTGPRQLTRLFLKLALDSHRWRVG-------LQPFPRAVPPPAPPTEERKAEILADPRVQ 520          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A7S0DGB1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGB1_9EUKA)

HSP 1 Score: 179 bits (453), Expect = 5.990e-46
Identity = 105/226 (46.46%), Postives = 141/226 (62.39%), Query Frame = 2
Query:   47 SLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSASAERYHRL-TEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATG----KTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPP-PPVTEERKQEILNDPRVKAR 706
            S+ +V+S+F FN  PNP      F+L +  IS   KP+P  VL++SA+ ER  R+ T+EER+N+IPIV LNP GILNWKYK E  LR+S L + V+R TGL  +    D  + L+  QGD++SG +SR+E+    +  L+SS S GKT ELRR E+ DA G             +GLV D DR  A      LP+ P A+  DPP  P+TE+ K+E+LNDPRVKA+
Sbjct:  418 SMNIVISKFEFNGMPNPNGIPTDFELRVDSISKVAKPKPQIVLITSAAVERNARIETKEERENEIPIVKLNPNGILNWKYKGENVLRESGLEYAVIRPTGLTTQNMTTDYALDLK--QGDSMSGSISRKEIAALTSLCLTSSCSTGKTMELRRSESRDALGVPGTNRKVLLGQLQGLVRDSDRFTAG-----LPVLPRAV--DPPVEPLTEKEKEEVLNDPRVKAQ 634          
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Match: A0A2P6TPM0_CHLSO (Nadh:ubiquinone oxidoreductase complex i intermediate-associated 30 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TPM0_CHLSO)

HSP 1 Score: 172 bits (435), Expect = 2.250e-43
Identity = 105/226 (46.46%), Postives = 132/226 (58.41%), Query Frame = 2
Query:   38 KMLSLGLVLSRFGFNEYPNPKYTAGAFQLDLME-ISLYKKPRPNFVLVSSASAERYHR--LTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRATGLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTFELRRDEAEDATGKTP---DFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQDPPPPVTEERKQEILNDPRV 697
            ++   GLVLSRF FN + NP Y  G F+L +   I  Y+ PRP  ++VSSA  ER  +  L EE RK DIPIV LNPG +LN KY  E ++R + L +CV+R TGL  E + G+ L  L+  QGD ++GR+SREE+ +   AAL    +A KT ELRR EA DA  K     D   LF GLV D+ R           L PF       PPVT+ERK+EIL D RV
Sbjct:  376 RIRQFGLVLSRFEFNGFANPAYRPGPFELRIEGGIRAYRDPRPQLIMVSSAGVERNAKIGLDEEARKKDIPIVQLNPGAVLNHKYSGENAVRAAGLPYCVLRPTGLTNESEPGEFL--LEASQGDRITGRISREELASLAVAALGLPSAAQKTMELRRQEATDAADKAMTDLDNLRLFLGLVQDKHRQRVG-------LEPFPAPXXXXPPVTDERKKEILADVRV 592          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10327.531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEE1_ECTSI2.000e-16098.77NADH:ubiquinone oxidoreductase complex I n=2 Tax=E... [more]
A0A836CBF4_9STRA2.130e-6552.07NADH:ubiquinone oxidoreductase complex I n=1 Tax=T... [more]
K8YU42_NANGC6.230e-6353.75Nadh:ubiquinone oxidoreductase complex i intermedi... [more]
A0A6U1NS47_9STRA8.310e-5647.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DB39_9STRA2.750e-5545.42Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2V0P7E0_9CHLO1.840e-4947.68Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
E1Z5W0_CHLVA1.340e-4848.72Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A0D2N0U4_9CHLO1.950e-4849.14Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A7S0DGB1_9EUKA5.990e-4646.46Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A2P6TPM0_CHLSO2.250e-4346.46Nadh:ubiquinone oxidoreductase complex i intermedi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10327contigEcto-sp8_S_contig10327:3309..6892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score445.7
Seed ortholog evalue1.4e-122
Seed eggNOG ortholog2880.D8LEE1
Model size1340
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Cds size693
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10327.531.1prot_Ecto-sp8_S_contig10327.531.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10327 3916..6852 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.3063836-UTR-Ecto-sp8_S_contig10327:3308..39151681143131.3063836-UTR-Ecto-sp8_S_contig10327:3308..3915Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10327 3309..3915 -
1681143131.3717084-UTR-Ecto-sp8_S_contig10327:6852..68921681143131.3717084-UTR-Ecto-sp8_S_contig10327:6852..6892Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10327 6853..6892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.3187473-CDS-Ecto-sp8_S_contig10327:3915..41401681143131.3187473-CDS-Ecto-sp8_S_contig10327:3915..4140Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10327 3916..4140 -
1681143131.3293343-CDS-Ecto-sp8_S_contig10327:4729..48751681143131.3293343-CDS-Ecto-sp8_S_contig10327:4729..4875Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10327 4730..4875 -
1681143131.3395965-CDS-Ecto-sp8_S_contig10327:5378..55331681143131.3395965-CDS-Ecto-sp8_S_contig10327:5378..5533Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10327 5379..5533 -
1681143131.3497665-CDS-Ecto-sp8_S_contig10327:6326..64481681143131.3497665-CDS-Ecto-sp8_S_contig10327:6326..6448Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10327 6327..6448 -
1681143131.3611333-CDS-Ecto-sp8_S_contig10327:6807..68521681143131.3611333-CDS-Ecto-sp8_S_contig10327:6807..6852Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10327 6808..6852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10327.531.1

>prot_Ecto-sp8_S_contig10327.531.1 ID=prot_Ecto-sp8_S_contig10327.531.1|Name=mRNA_Ecto-sp8_S_contig10327.531.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=231bp
MLSLGLVLSRFGFNEYPNPKYTAGAFQLDLMEISLYKKPRPNFVLVSSAS
AERYHRLTEEERKNDIPIVALNPGGILNWKYKAETSLRKSSLRHCVVRAT
GLIAEGKEGDELVRLQMGQGDTLSGRVSREEVGTTVAAALSSSYSAGKTF
ELRRDEAEDATGKTPDFTSLFRGLVVDEDRSLASAGGASLPLPPFAIVQD
PPPPVTEERKQEILNDPRVKARTAASKKPE*
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mRNA from alignment at Ecto-sp8_S_contig10327:3309..6892-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10327.531.1 ID=mRNA_Ecto-sp8_S_contig10327.531.1|Name=mRNA_Ecto-sp8_S_contig10327.531.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3584bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10327:3309..6892- (Ectocarpus species8 EcLAC_412)
CAACGCCCCGCGGGTGAACGAAGGCCCTGCTGGCGGCAAGATGCTAAGCC TCGGGCTCGTCCTCAGCCGGTTCGGTTTCAATGAGGTGTGTGCGTTGCCG GGTTTTTATTTTTTCTGTGTTCTGTGGTGGTCGGTGGTCGTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGGTGGTGGTGATGG TGGTGGTAGGGGCGGCGGGTTCTGGTGCTGGTGCTGCGTTTTTGTAGTAC TTGTTTTTCTTTATGTTGGAGCATGAGCAACAGGTAGCCATCAGTTGATG AAAACGACGTTCAGCAGTGATGATGGGTGTACGGTGTACTGACCATCCGA CGATCAGGCAAAGCGGAACACACGCAAGCCTTACTAGCCCACAGGATGAC CCCCTCCCCCCTACCCTCAATTTCCGTCTCGCCCACGGGAGCAGTACCCG AACCCCAAGTACACGGCAGGAGCCTTCCAGCTGGATCTCATGGAGATAAG CTTGTACAAGAAGCCGAGGCCGAACTTCGTGCTCGTCTCCTCTGCTTCCG CGGAGCGATACCACCGGTGCGGCAAAGATTACTCCCCTCTCGTTCGATCC TTGTATTTGTTTTTGTTTTTGCGTCGGGGCTGGAATTAACCGGGCGTATT GCGTGCAATAAATGCGGCGGAATTACTCCTGGGCGAAGGAGCACTAACGA AGTCAACGCTCGGTCCTGCGGGGACCAAATACACCAACCTCCAACAGTCT ACAGTAGAGGTTTGAGGTGTCAGGGCTAAGAGCGGGGGGTGCGAGAACAA CATGGCCAGTGTAACCGTCAACCTCGAGGTTTAAGTCCCGTACTTGTCGT CCAAGACAGGTCCTCCTTGCTTTGCTTGCGGTTGCTATTGGTTGCGTTAC GAGTGTGCTTTCTCCCGGCCCTCGCCGTGGACACCACCTCACTCACAAAA CACGAACGCCTTTTCCGCGTATCCCCGGTCGGGCTCTCAGGGCTTATTCG AAGGTTTTGTTGCGGTGTTTTGTTCTCTTGCAACGGATATGTTGTGTATT GACGGTCGCTCACGGAGGCTTGTGTGTATGGTATCCAGAGAATAGAGCCC GAGAACGGTCTTCGATGGTGCTGTCTGTTCCTGTATGACATGGTGTGGCC CCGGCTGATACGTCACACGTACTTCACCCAAAGGCGTGCAGACTGGCGCC AGAATAGATGGGACGGAGACACACACCTTCTTTTTTTTTTTTCTACCGGG AATTGTTCTTGGCAACCATTCGCAAACCCGCACTTTGCATGTGGTGCCGT AAACTCTTGAGTATTTTCAACGATCTTGGGGGGCATTTTCAACGCTCTTC TGTCTCCAGGTTGACCGAGGAGGAACGCAAGAACGACATCCCCATCGTCG CCCTTAACCCCGGGGGCATCCTCAACTGGAAGTACAAGGCCGAGACCAGC CTCCGAAAATCGTCGCTTCGGCACTGCGTCGTGCGCGCTACGGGACTCAT CGCCGAGGGAAAAGGTGTGTGATTTCCTTCTCTTCCCCGACTGCTATTTT TTTCTATTCCGAAAAGTTGTTCTGTTTGTGGTGTGTTGGTCTGCTAATTT GGGTTTTTGACGTGGGAAAACATTTGTGGGATTGTGCGGTGTCTATGCAT ACGCACGAACTTTTTTTTCTTCTGTGAGACAGATGTTGGGATGTATTGAA TGGCGTTACGGTAGGTGACACAAGATACCACACACCCTGGACCGATTTTT TTGCTCGATTACTCCGCGACAAAGAGGTTGCATAAATGAAACGATACGTT TTCGGGAAGCTCTCGACGAGACGGCTTTCAACGCCACCGTTTTCGGCGCT GGTACTCGTTCTGCTGTGGAGAAATCGAGCTTTGAAAATCGGCCCGGGGT GTGGTATCTTATGTCATGTACGGAATTTTCTCCTCTCTCCTTCCTCGCGC CCCAGGAATATCTGTTTTAACTAGTCAAAGTACCCTCCATTTGTTTTTGG AATTGTATGGAATTCAGAGGGAGATGAGTTGGTCCGGCTGCAGATGGGCC AGGGCGACACGCTGTCGGGGAGAGTCTCTAGGGAAGAGGTTGGGACTACG GTGGCGGCGGCGTTGAGCAGCTCTTACTCGGCGGGGAAGACGTTCGAGCT CCGCAGGGATGAGGTGAGGGAGTTGTATTGGTGTACTTGTTGTTGTTGTT GTTGTTGTTGTTGCTGCTGCTGCTGCTGGTATTGTTGCTGTTGTGTTCAC CTTGGAGGGGCAGGCGGCTTGAATGGGCCATGGACTGTATCGTTCTGTCT ATTCTCGGTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTACTGC TACTCTATTAATAGTCACTTTTTTTGCCGCTGCTGTCATTGTACTCATTG CTGCTGGTGGTAAACGTTTTGTGCCTGTCCCTGTTGTCGGCCGTTGGCGC CTGTTTGTACTGAGCAGAATTCAGTTGTTGTTGTTTCGAGTCGCGGTACA AAAGTTTTAGTTTTCCTTGTGCCATCGGTGTTGGTCCCTATCGTCGCCCC GGGGCTTTCGCTGCTACAACACTTCATGGCCCCCACAACCCTCTCGTTGT CTACGCGCGACAACAGCAAACCCAACAAATCCCCCTCATATGATAGTGAC TCCGACATCACCTCCTCCCCCCTGCCGAGGTCAATGATCAAACGACTACG GCATGTACAACTATGAGTACCCCTCCCTCCCCGCCCCCCGCCCCTCCCGC AGGCGGAAGACGCCACCGGGAAAACCCCAGACTTCACGTCCCTGTTCCGC GGTCTGGTTGTCGACGAGGACCGGTCCCTGGCTTCCGCGGGAGGGGCAAG CCTGCCCCTGCCGCCGTTCGCCATTGTCCAGGACCCTCCCCCGCCGGTAA CGGAGGAAAGGAAGCAGGAAATTCTCAACGACCCGAGGGTCAAGGCTCGG ACCGCGGCTTCCAAGAAGCCCGAATGATTTTATTTTTTTCTTTCCGTGGA ATAGTTGATCGGGCCTTGTTGAGGGGGGTTCCAGAGGCGAAGTCACACGA AATGCGTTCGGTTTTTGTTTTCTGCGGGATAGTTGATCGGCGGGGGGCTA GAGAGGCGAAGTCACACGACGGTTTGTTTCAGATGTTGCCAAAGGAGGCG GGGGCAGCAGCGGCGGCCAAACAGAACGGTGATATTTTCCCGCGACATAG TTGATCGGCGGGGGGGGTAGAGAGGCGAAGTCAAACCACGCTTGGTTGCA GATGTTGCCGCTGCCACGCCGCTTCCAAGACAGTGACGAGCTTGGCCAAG ACCAATAGTATGGGGATGCTTCTGTGTCGAAATCCAGCGAGAACGAGCTT GTTAGATCGATCGTGGTCTAGACTACTTCGCGCAGTAACCGGCCCCTTGG TCGTTAGCTGGGCGTACAGGTGCCAATAAGACACGACTGAGCCGGTGTAA ATTGAGCTGTTCAACTTTTGTAATAGCGGGTTTATTTGTTGTTTCAAAAG AGAGTGATCAATTTAGACAAGCGGCCAGAAGTCGAACCAATCTGCTTTCT TTTGTGTCAAATTGGCGAGACGTTGAACGGAGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10327:3309..6892-

>mRNA_Ecto-sp8_S_contig10327.531.1 ID=mRNA_Ecto-sp8_S_contig10327.531.1|Name=mRNA_Ecto-sp8_S_contig10327.531.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10327:3309..6892- (Ectocarpus species8 EcLAC_412)
ATGCTAAGCCTCGGGCTCGTCCTCAGCCGGTTCGGTTTCAATGAGTACCC
GAACCCCAAGTACACGGCAGGAGCCTTCCAGCTGGATCTCATGGAGATAA
GCTTGTACAAGAAGCCGAGGCCGAACTTCGTGCTCGTCTCCTCTGCTTCC
GCGGAGCGATACCACCGGTTGACCGAGGAGGAACGCAAGAACGACATCCC
CATCGTCGCCCTTAACCCCGGGGGCATCCTCAACTGGAAGTACAAGGCCG
AGACCAGCCTCCGAAAATCGTCGCTTCGGCACTGCGTCGTGCGCGCTACG
GGACTCATCGCCGAGGGAAAAGAGGGAGATGAGTTGGTCCGGCTGCAGAT
GGGCCAGGGCGACACGCTGTCGGGGAGAGTCTCTAGGGAAGAGGTTGGGA
CTACGGTGGCGGCGGCGTTGAGCAGCTCTTACTCGGCGGGGAAGACGTTC
GAGCTCCGCAGGGATGAGGCGGAAGACGCCACCGGGAAAACCCCAGACTT
CACGTCCCTGTTCCGCGGTCTGGTTGTCGACGAGGACCGGTCCCTGGCTT
CCGCGGGAGGGGCAAGCCTGCCCCTGCCGCCGTTCGCCATTGTCCAGGAC
CCTCCCCCGCCGGTAACGGAGGAAAGGAAGCAGGAAATTCTCAACGACCC
GAGGGTCAAGGCTCGGACCGCGGCTTCCAAGAAGCCCGAATGA
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