mRNA_Ecto-sp8_S_contig10324.528.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10324.528.1
Unique NamemRNA_Ecto-sp8_S_contig10324.528.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10324.528.1 vs. uniprot
Match: A0A6H5JNX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.440e-18
Identity = 54/99 (54.55%), Postives = 57/99 (57.58%), Query Frame = 1 
Query:  517 MYSVLLDMGEEDAPQEHVDAENDPQEHVVGVVADPHEY-----------VGAEDDP*--------------DEEDEWMPRVRVTTPRSWPRAGHRQLKH 738
            +Y VLL+ GEEDAPQEHVDAENDPQEHVVG   D  +            VG E  P               DEEDEWMPRVRVTTPRSW R G  Q KH
Sbjct:  140 VYCVLLEKGEEDAPQEHVDAENDPQEHVVGAEDDAQDLWRGGRARQEHVVGVEGAPXXXXXXXXXXXXXXVDEEDEWMPRVRVTTPRSWRRTGRGQHKH 238
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10324.528.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.290e-10
Identity = 69/148 (46.62%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:  511 GNMYSVLLDMGEEDAPQEHVDAENDPQEH------------------------VVGVVADPHEYVGAE--------------DDP*D-EEDEWMPRVRVTTPRSWPRAGHRQLKHRNRRLREXXXXXXXXXG----AGGLRRCAPIRG 825
            GNMY VL +M  EDA  +HVD E+DPQEH                               P E+  AE              D P   EEDEW+PRVRVT PRSW R G RQLKH+NR    XXXXXXXXX     AGGLRR APIRG
Sbjct:  293 GNMYDVL-EMDGEDA-DDHVDGEDDPQEHDQPRGSVDEXXXXXXXXXXXXXXXXXXXXXXPREHASAEXXXXXXXXXXXXXXDAPYVVEEDEWVPRVRVTKPRSWRRTGRRQLKHQNRXXXXXXXXXXXXXXXXXXAGGLRRRAPIRG 438
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10324.528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNX5_9PHAE5.440e-1854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPM1_ECTSI2.290e-1046.62PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10324contigEcto-sp8_S_contig10324:4331..6370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1126
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000800.4
Cds size813
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10324.528.1prot_Ecto-sp8_S_contig10324.528.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10324 4438..6164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.0378015-UTR-Ecto-sp8_S_contig10324:4330..44371681143131.0378015-UTR-Ecto-sp8_S_contig10324:4330..4437Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10324 4331..4437 -
1681143131.1136317-UTR-Ecto-sp8_S_contig10324:6164..63701681143131.1136317-UTR-Ecto-sp8_S_contig10324:6164..6370Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10324 6165..6370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143131.0467017-CDS-Ecto-sp8_S_contig10324:4437..45761681143131.0467017-CDS-Ecto-sp8_S_contig10324:4437..4576Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10324 4438..4576 -
1681143131.0562985-CDS-Ecto-sp8_S_contig10324:4929..49861681143131.0562985-CDS-Ecto-sp8_S_contig10324:4929..4986Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10324 4930..4986 -
1681143131.0771286-CDS-Ecto-sp8_S_contig10324:5167..54791681143131.0771286-CDS-Ecto-sp8_S_contig10324:5167..5479Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10324 5168..5479 -
1681143131.093247-CDS-Ecto-sp8_S_contig10324:5625..58461681143131.093247-CDS-Ecto-sp8_S_contig10324:5625..5846Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10324 5626..5846 -
1681143131.102842-CDS-Ecto-sp8_S_contig10324:6080..61641681143131.102842-CDS-Ecto-sp8_S_contig10324:6080..6164Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10324 6081..6164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10324.528.1

>prot_Ecto-sp8_S_contig10324.528.1 ID=prot_Ecto-sp8_S_contig10324.528.1|Name=mRNA_Ecto-sp8_S_contig10324.528.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=271bp
MLLVADFLDDNAVMLAGKLFGLQVQIVQASMTHTQWVALVDPTTSAGWWT
TSLSFWRWTFRRLWPMQRRTVRRTGLPPMQRRTARRTARRTVTRPLPRRF
LRQHVQCAARHGRGGRPPGARGRGERPPGARRGRGGRPPRVRGRGGRPLG
RGGRMDAAGSCNHASQLAEGWSSSTQASEPAPPRETPPPPPKTRSRWPSP
VCPDTRCLGGRSEQLRMKHPRPLMSGSATSAGTREEGQSRHNRWASTARR
SQHVYHNRSSSRWNGPPCRH*
back to top

mRNA from alignment at Ecto-sp8_S_contig10324:4331..6370-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10324.528.1 ID=mRNA_Ecto-sp8_S_contig10324.528.1|Name=mRNA_Ecto-sp8_S_contig10324.528.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2040bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10324:4331..6370- (Ectocarpus species8 EcLAC_412)
GCGCACGCGATGCGCATAAGATACTGTCTCTGGATGATGCGCATAAGAGA
CTGTGGCGATCTGGGAGAACTTCCTGCTTGTCTGCCGGGGGCGTATATGT
ACAGAGTAGTGGAGTGCGCAAGTCGGACGAAGAGATCAATCAAGGAGTTG
GCCACGTCGGCTTCGAACCTCGGCAGCCAGCGCGACTGGAACTACTGCTG
TACATCATGCTCCTGGTAGCAGATTTTCTCGACGACAACGCCGTCATGCT
CGCCGGGAAGCTTTTCGGGCTTCAGGTGCAGATCGTCCAGGTGAACAACG
ATATATCCGACAGCTTGGAGCACCTCGTCCTCTGGGGCAATAGTTGGTGC
TGCACCGCCCGCACTGTGCACACTTCGAGGCTCTTGTGTCCAAGGTCAGA
TCCGTGGCTCACGAAAATGTCTTGTTTTATTCGCGTGCCGAACTACATGT
AGTCTATGTACAGTATATACCACACATTTACTCGTCAGTCTCACTTCTAC
TTCCCACACTTCTTTTCTCACCAGGCAAGCATGACACACACCCAGTGGGT
GGCCCTTGTGGACCCAACGACGTCAGCTGGGTGGTGGACTACCTCACTGA
GCTTTTGGAGATGGACTTTCAGACGCTTGTGGCCGATGCAGAGACGGACG
GTGAGACGGACAGGGCTGCCGCCGATGCAGAGGCGGACGGCGAGGCGGAC
GGCGAGACGGACAGTGACGAGGCCCCTCCCGAGACGGTTTCTGAGGTAAG
CAGAGTTCGGGTCAAGTTGTAACGTGCTTGTCTGGCTCGCTTCGAGGTGT
GTATGTGTTTGTGGTCGATCTATCTACGTAACTTCTTCTGTTTCACTCTC
GGCTTGTCCTCAGCGTAAGGCCTTCGTGTACCACACCACAGGCAACATGT
ACAGTGTGCTGCTCGACATGGGCGAGGAGGACGCCCCCCAGGAGCACGTG
GACGCGGAGAACGACCCCCAGGAGCACGTCGTGGGCGTGGTGGCCGACCC
CCACGAGTACGTGGGCGCGGAGGACGACCCCTAGGACGAGGAGGACGAAT
GGATGCCGCGGGTTCGTGTAACCACGCCTCGCAGCTGGCCGAGGGCTGGT
CATCGTCAACTCAAGCATCGGAACCGGCGCCTCCGCGAGAAACGCCGCCG
CCGCCGCCAAAGACGCGGAGCCGGTGGCCTTCGCCGGTGTGCCCCGATAC
GAGGTGGAGCTAACACAGGGGACGGACTGCTGTGTCGTTTGTTTTTGTCG
GCTCGTATGTCAGGTGGAGCGAATAGATAACAGATCTTTGTTTGCGTTGT
CTCCTAGGATTACTTATGTTTAATTGTCCGACAGGTCTGTACCTCGTACA
CTAAACGTCGAACGCTTCGACTGCTTTGAAACAGGTGTCTGGGAGGCCGA
AGCGAACAACTGCGGATGAAGCACCCCCGCCCCCTGATGAGGTGCGAGTT
TTGGCAGCCTCTGCGCGAAATGACCGTTCCTGGTACGAGAAACAACACAA
AGATGTATGGTCAAGACACCAAAAGCCCTAAGAACGCAGCTTGCGCATGC
TGGCTGGGAGAAGGTCCTGTTGTGGGAAGCCCAGCAGAAGCGGGAAGCCC
TGGAGACGCAGAAGGCGATGGCTAAAGTGGAGTGCATGGAGTGCATAAAA
AAAGACACCGGTCGAGACTGCTCCAACTGTTCATTTAGCCACAGAATGTA
GCGCTGAAATCCTTACAAGCCTCGCAATGTGTGCCTTCAATGTTTCGTGC
TTGCGTTGATCGCGTCCTGCCATTGCTCGCACTCCCTTGAACAGTGGTTC
TGCGACGAGTGCAGGGACGAGAGAGGAGGGGCAGAGCCGGCACAACCGAT
GGGCGTCGACGGCCCGACGGAGTCAACACGTGTACCACAACCGTAGCAGC
AGCCGATGGAACGGGCCCCCGTGTCGACATTAGCGAACGCGAGCACGACC
ACTAAAAGGAAGGGGCGCACTACATCGAAGAGGGGACACAAAGCTGGCAA
GGCTGCGGCTGGTTCGACGGCTCGCAAGGTGGGCAAACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10324:4331..6370-

>mRNA_Ecto-sp8_S_contig10324.528.1 ID=mRNA_Ecto-sp8_S_contig10324.528.1|Name=mRNA_Ecto-sp8_S_contig10324.528.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10324:4331..6370- (Ectocarpus species8 EcLAC_412)
ATGCTCCTGGTAGCAGATTTTCTCGACGACAACGCCGTCATGCTCGCCGG
GAAGCTTTTCGGGCTTCAGGTGCAGATCGTCCAGGCAAGCATGACACACA
CCCAGTGGGTGGCCCTTGTGGACCCAACGACGTCAGCTGGGTGGTGGACT
ACCTCACTGAGCTTTTGGAGATGGACTTTCAGACGCTTGTGGCCGATGCA
GAGACGGACGGTGAGACGGACAGGGCTGCCGCCGATGCAGAGGCGGACGG
CGAGGCGGACGGCGAGACGGACAGTGACGAGGCCCCTCCCGAGACGGTTT
CTGAGGCAACATGTACAGTGTGCTGCTCGACATGGGCGAGGAGGACGCCC
CCCAGGAGCACGTGGACGCGGAGAACGACCCCCAGGAGCACGTCGTGGGC
GTGGTGGCCGACCCCCACGAGTACGTGGGCGCGGAGGACGACCCCTAGGA
CGAGGAGGACGAATGGATGCCGCGGGTTCGTGTAACCACGCCTCGCAGCT
GGCCGAGGGCTGGTCATCGTCAACTCAAGCATCGGAACCGGCGCCTCCGC
GAGAAACGCCGCCGCCGCCGCCAAAGACGCGGAGCCGGTGGCCTTCGCCG
GTGTGCCCCGATACGAGGTGTCTGGGAGGCCGAAGCGAACAACTGCGGAT
GAAGCACCCCCGCCCCCTGATGAGTGGTTCTGCGACGAGTGCAGGGACGA
GAGAGGAGGGGCAGAGCCGGCACAACCGATGGGCGTCGACGGCCCGACGG
AGTCAACACGTGTACCACAACCGTAGCAGCAGCCGATGGAACGGGCCCCC
GTGTCGACATTAG
back to top