mRNA_Ecto-sp8_S_contig10320.523.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10320.523.1
Unique NamemRNA_Ecto-sp8_S_contig10320.523.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: D7FPR4_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR4_ECTSI)

HSP 1 Score: 676 bits (1743), Expect = 2.450e-232
Identity = 458/543 (84.35%), Postives = 464/543 (85.45%), Query Frame = 1
Query:  301 MAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAGAIADMLSRNCTLTSLNLGWNFLRGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNCDTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQGLVQHAVLCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEISTDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
            MAALGSNISLLEIDLEGNLIGKSETMKV            TSAGAIADMLSRNCTLTSLNLGWNFLRGDS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNCDTSHKDETLF+DASATGEYELNLQIPYHRVVASELLRIAN KPTAHFRSLKHIVGNKVTNLKLHR  NAAVAPIDPRVDVTRRIKGC+AK  MLGLGLVSEYAD LGINPEAD ASKLMQIWNK+L +DRKR N DN DSG  DFVVSSFFEALFMLAD DEKGELI  DLEILFQALKLPHSEARLRHVMSKYDADHSGS+DVEEFRHYMV                                              ISTDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSY+IIDAVAILIPQLASSQECS FVDSNLDHR KFKLRFMIG AWGAILGMPSG
Sbjct:    1 MAALGSNISLLEIDLEGNLIGKSETMKV------------TSAGAIADMLSRNCTLTSLNLGWNFLRGDSAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNCDTSHKDETLFNDASATGEYELNLQIPYHRVVASELLRIANRKPTAHFRSLKHIVGNKVTNLKLHRESNAAVAPIDPRVDVTRRIKGCMAKDGMLGLGLVSEYADTLGINPEADAASKLMQIWNKVLAEDRKRENRDNVDSGGDDFVVSSFFEALFMLADKDEKGELIVEDLEILFQALKLPHSEARLRHVMSKYDADHSGSVDVEEFRHYMV----------------------------------------------ISTDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYNIIDAVAILIPQLASSQECSAFVDSNLDHRDKFKLRFMIGVAWGAILGMPSG 485          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: D7FPR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPR5_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 4.280e-55
Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECR 294
            +VGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHA+VKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECR
Sbjct:   48 EVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAVVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECR 145          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: K3WJ75_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJ75_GLOUD)

HSP 1 Score: 192 bits (487), Expect = 8.450e-48
Identity = 239/643 (37.17%), Postives = 335/643 (52.10%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAGAIADMLSRNCTLTSLNLGWNFLRGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNCDTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQGLVQHAVLCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEISTDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
             V  M +GDE+    A  L  L  V  L   +NR  D+G  AI+  V +     H+DLS+N+   DA++ L  Y+ +  C L+SL +  AD+DD E   F  AL +N SL  +DL  NLIG +E + VVR         VT   A+A ML  N TLTSL+L WN+LR             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GG  L  A+   T  E  L V+M+ C+    D   FD A +TG Y+LN++IPY R VA ELLR+AN K    F S+ H      T+    +  N  V          R  +G  A  R+L                 A + +       K+ E    R +           +V+ F+E      D D+ G +   +L+   + + L   +  +   +++YD D +G+++++EF   M + +L++G      +  +  + + +P  G L++ FV    S        +  GV  LI N+  S     + +   LA   SG FF +++AQ +LE+V+  Y++  AV  L+P +   +     +D NLD   + +L+ ++G A   +LG+ +G
Sbjct:  328 NVSHMAIGDELACVFAACLYDLPMVTGLNVRNNRLRDQGLRAIIDVVIAKKDMFHIDLSENKFDGDASSSLAAYLGSATCALQSLKLSHADVDDTELAPFAKALHTNKSLQTLDLSSNLIGSTENLNVVRPSI------VTGGEALATMLCINYTLTSLDLSWNYLRLGGAVELGKALGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGQTGGRGLLHAVAACT--ERQLQVSMEGCNFDLTDADAFDPAESTGTYDLNMEIPYERAVALELLRVANTKQGCKFLSIVH------TSAATKQKRNIKVE--------LREAEGSEAHRRLL---------------KTAGILTNPQMSERKIKEYKLDRPS-----------LVTLFYEL-----DQDDSGFIDDNELKRGMRKIGLAFRDEDIPRYIAQYDLDGTGTMELDEFVELMSSFNLEEGQFARECVDLETNEAFTIPTEGRLQIDFVDFHVSVDH-DNAHSQAGVERLIENISTS-----KNKSQMLAMAKSGLFFKANEAQLLLESVADVYEVTQAVTTLLPNMVDPKNAYALIDHNLDASQRVRLQHLLGQALQPMLGLSTG 911          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: A0A5D6XZU4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZU4_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.510e-46
Identity = 256/645 (39.69%), Postives = 348/645 (53.95%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAG-AIADMLSRNCTLTSLNLGWNFLR-GDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNCDTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQGLVQHAVLCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEISTDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
             V  M +GD +    A  L  L  V  L   +NR  D G  A+V  V + P   HLDLS+N+ G  AA  L  Y+ +  C L++L + +AD+DD E   F  AL +N SL  ++L  NL+G SE + VVR         +T+ G A+A MLS N TLT+L+L WN+LR G +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    L        R    L V+M+ C+    D   FD A +TG Y+LN+++PY R VA ELLR+AN K    F SL H+ G             AA A    ++++ R + G  A+ R+L      + A  L        AS+  +   K  + DR                 +S  E LF   D D  G +   +L++    L L   +  +   +++YD D +G+I+++EF   M + +L+ G      +  Q    +++P  G L + FV    S        +  GV  LI N+  S     + +   LA   SG FF + +AQ +L+AV+  Y+ I AV +L+P + S +E    +D NL+   + +L+ ++G A   +LGM SG
Sbjct:  211 NVSHMAIGDALAGVFAQCLRDLPMVTGLNVRNNRLGDAGLRALVDVVVAKPDLFHLDLSENKCGGAAAAALAGYLGSAACTLQTLKLSRADVDDAELAPFARALHANRSLRTLELSRNLVGSSEHLNVVRPS-------ITTGGEALATMLSINYTLTALDLSWNYLRLGGAVELGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHAVAACGDRQ---LAVSMEGCNFDLADADAFDPAESTGAYDLNMEVPYERAVALELLRVANTKQGCKFLSLVHVTG-------------AARARRAIKLEL-REVDGSDARRRLL------KTAGIL-------TASRADEQEMKAYKLDR-----------------ASLVE-LFRELDKDGSGSVDDAELKLGMHRLGLSFRDDDIPRFIAQYDLDGTGTIELDEFVDLMASLNLEDGHFARECVDVQTNLPFEIPTEGRLLIEFVDLHVSVDH-DNAHSHAGVERLIENISAS-----KNKSQMLAMAKSGLFFKAGEAQLLLDAVAELYEPIQAVQLLLPNMVSPKEAHALIDHNLNAGERVRLQHLMGQALDPMLGMGSG 794          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: A0A225W800_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W800_9STRA)

HSP 1 Score: 182 bits (463), Expect = 6.860e-45
Identity = 237/646 (36.69%), Postives = 329/646 (50.93%), Query Frame = 1
Query:   13 MGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAG-AIADMLSRNCTLTSLNLGWNFLR--GDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNC--DTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQ--GLVQHAVLCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEISTDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
            M +GD++    A  L  L  V  L A +NR  DRG  A+V  V +     HLDLS+N+V   AA+ L  Y+ +  C+L++L +  AD+DD E   F  AL SN SL  +D+  N +G SE + VVR         VT+ G AIA M+S N TLTSL+L WN+LR  G       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  GG AL  A   +  D   L V+++ C  D S   +  FD A  TG Y+L++++PY R VA ELLR+AN K    F S+ H             +  A     + RV++    +G  A+ ++L  G V             D A    ++ +K L+++                      EALF   DND+ G +   +L    + L L   +  +   ++ YD D +G+I++EEF   M + +L +  G  +  V   +  + +++P  G L+L FV    S        TD  V  LI N+  S     + +   L    +G  F +H+AQ ++EAV    D   AV  L+P +  ++     ++ NL    + +++ ++G A   ILGM SG
Sbjct:    1 MAIGDDLACVFAACLLDLPMVTGLNARNNRLRDRGLQALVDVVVAKSDLYHLDLSENKVDGQAAHALASYLGSASCRLQTLRLASADVDDGELVPFARALHSNKSLETLDVSRNSVGSSEHLNVVRPS-------VTTGGEAIATMISINSTLTSLDLSWNYLRLSGAVEIGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPLTEIALGGNPLGSMGGRALLHAAA-ACADSKKLSVSLEGCNFDASGDGDGSFDPADPTGSYDLHMEVPYERAVALELLRVANTKQGCKFLSIVH-------------TSTANKQRRNIRVELRETQEGIDARRKLLKTGSVL-----------TDAARSAREMASKGLDRES--------------------LEALFHELDNDDSGFIDENELHEGMRKLGLQFRDEDVPRYVALYDLDGTGTIEMEEFVELMESFNLDEMDGGTRECV-DIETNQPFKIPTEGRLQLDFVDLHVSAGN-DTTQTDASVERLIENISAS-----KNKTQMLLMAKTGLIFKAHEAQQLVEAVRDVCDASQAVIALLPHMVDTRNAYTLMERNLGSADRLRVQHIMGHALQPILGMSSG 587          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: A0A3R7K1C4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K1C4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.720e-44
Identity = 241/652 (36.96%), Postives = 326/652 (50.00%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAG-AIADMLSRNCTLTSLNLGWNFLR--GDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNC--DTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQGLVQHAVLCAQ--DGKEWQVPHNGTLRLSFVQEPSSYRTLGEIS--TDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
             V  M +GD++    A  L  L  V  L A +NR  DRG  A+V  V S P   HLDLS+N+V  +AA  L  Y+ +  CKL++L +  AD+DDDE   F  AL +N SL  +D+  N +G SE + VVR         VT+ G A+A MLS N TLTSL+L WN+LR  G       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  GG AL  A+      +  L ++++ C  D +   E  FD A  TG Y+LN+++PY R +A ELLR+AN K    F S+ H         K  R+    +  I   VD  R++                      GI  +A   S    +   L   DRK                    E LF   D DE G +   +L    + L +   +  +   ++ YD D +G+I+++EF   M + +L +     A  C      + ++VP  G L+L FV     +   G  S  ++ GV  L+ N+R S   D  + LF   T   G  F SH+AQ ++EAV    D   AV  L+P +   +     ++ NL    + +++ ++G A   ILG+ +G
Sbjct:  239 NVSHMAIGDDLACVFAACLLDLPMVTGLNARNNRLRDRGLEALVDVVVSKPDLFHLDLSENKVDRNAAQALAAYLGSACCKLQTLRLASADVDDDELVPFARALHTNKSLQTLDVSRNSVGSSEHLNVVRPS-------VTTGGEALATMLSINNTLTSLDLSWNYLRLSGAVEIGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGLPLTQLSLGGNPLGSMGGRALLHAVAACAVSK-KLSISLEECNFDAAVGGEGSFDPADPTGSYDLNMEVPYERAIALELLRVANTKQGCKFLSIVHTSSVN----KQRRNIRVELREIQEGVDARRKL------------------LKTAGILTDAQAPSDRELVSRSL---DRKS------------------LEELFHELDKDESGFIDEHELRAGMRKLGIQFRDEDVPRYVALYDLDGTGTIELDEFVELMESFNLDEVDSGFARECVDLDTNQPFEVPLEGRLQLDFVD---LHVAAGRDSANSEAGVERLVENIRASK--DKTQMLFMAKT---GLVFNSHEAQLLVEAVCDVCDASQAVTALLPHMTDCRNAYALMERNLSSSDRLRVQHLMGQALQPILGLATG 831          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: A0A2P4XG99_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XG99_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.100e-43
Identity = 235/656 (35.82%), Postives = 333/656 (50.76%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYM--RNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAG-AIADMLSRNCTLTSLNLGWNFLR--GDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNC--DTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHI--VGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQ--GLVQHAVLCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEIS--TDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
             V  M +GD++    A  L  L  V  L A +NR  DRG  A+V  V +     HLDLS+N+V   AA+ L  Y+   +  C+L++L +  AD+DDDE   F  AL SN SL  +D+  N +G SE + +VR         VT+ G A+A M+S N TLTSL+L WN+LR  G         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  GG AL  A   +  D   L V+++ C  D S   +  FD A  TG Y+LN++IPY R VA ELLR+AN K    F S+ H   V  +  N+               RV++    +G  A+ ++L            G+  + +V S   ++ +K L+++                      EALF   D+D+ G +   +L    + L L   +  +   ++ YD D +G+I++EEF   M + +L +  G      +  +    +++P  G L+L FV     + T G  S  +D  V  LI N+  S     + +   L    +G  F +H+AQ ++EAV    DI  AV  L+P +   +     ++ NL    + +++ ++G A   ILG+ +G
Sbjct:  236 NVSHMAIGDDLACVFAACLLDLPMVTGLNARNNRLRDRGLQALVDVVVAKTDLYHLDLSENKVDGQAAHALASYLGSASSSCRLQTLRLASADVDDDELVPFARALHSNKSLQTLDVSRNSVGSSEHLNIVRPS-------VTTGGEALATMISINSTLTSLDLSWNYLRLAGAVEIGRALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPLTEIALGGNPLGSMGGRALLHAAA-ACADSKKLSVSLEGCNFDASGDGDGSFDPADPTGSYDLNMEIPYERAVALELLRVANTKQGCKFLSIVHTSTVNKQRRNI---------------RVELRETQEGVEARRKLL---------KTAGVLTDMEVPSA-REMMSKRLDRES--------------------LEALFHELDSDDSGFIDESELREGMRKLGLQFRDDDVPRYVALYDLDGTGTIEMEEFVELMESFNLDELDGSNVRECVDVETNLPFKIPTEGRLQLDFVD---LHVTAGNDSAQSDASVERLIENISAS-----KNKTQMLLMAKTGLIFKAHEAQQLVEAVRDVCDISQAVIALLPHMVDPRNAYTLMERNLSSADRLRVQHIMGHALQPILGLSTG 830          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: G4ZX23_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZX23_PHYSP)

HSP 1 Score: 177 bits (449), Expect = 5.480e-43
Identity = 237/652 (36.35%), Postives = 329/652 (50.46%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAG-AIADMLSRNCTLTSLNLGWNFLR--GDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNC--DTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQ--GLVQHAVLCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEIS--TDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
             V  M +GD++    A  L  L  V  L A +NR  DRG  A+V  V +     HLDLS+N+V   AA+ L  Y+ +  C+L++L +  AD+DDDE   F  AL SN SL  +D+  N +G SE + VVR         VT+ G A+A MLS N TLTSL+L WN+LR  G        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  GG AL  A   +  D+  L V+++ C  D S   +  FD A  TG Y+LN++IPY R VA ELLR+AN K    F S+ H      +++   R         + RV++    +G  A+ ++L            GI  +    S    I  +L     K                      LF   D D  G +   +L +  + L L   +  +   ++ YD D +G+I+++EF   M + +L +  G      +  +    +++P  G L+L FV     + +LG  S  +D  V  LI N+  S + +  + LF   T   G  F +H+AQ +LEAV    D   AV  L+P +   +     ++ NL    + +++ ++G A   +LG+ SG
Sbjct:  235 NVSHMAIGDDLACVFAACLLDLPMVTGLNARNNRLRDRGLQALVDVVVTKSDLYHLDLSENKVDSHAAHALASYLGSSSCRLQTLRLASADVDDDELVPFARALHSNKSLQTLDVSRNSVGSSEHLNVVRPS-------VTTGGEALATMLSINSTLTSLDLSWNYLRLAGAVDIGKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIALPLTELMFGGNPLGSMGGRALIHAAA-ACADKKKLSVSLEGCNFDASGDGDGSFDPADPTGSYDLNMEIPYERAVALELLRVANTKQGCKFLSIVH-----TSSINKQRR--------NIRVELRETQEGLEARRKLL---------KTAGILTDVQAPSARELISRRLDRASLKE---------------------LFHELDKDNSGFIDERELRVGMRKLGLQFRDDDVPRYVALYDLDGTGTIEIDEFVELMESFNLDEIDGGFSRECVDVETNLPFEIPAEGRLQLDFVD---LHVSLGNDSAQSDASVERLIENI--SSSKNKTQMLFMAKT---GLVFKAHEAQLLLEAVRDVCDPSQAVMALLPHMVDPRNAYTLMEHNLSSSDRLRVQHLMGQALQPMLGLASG 827          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: A0A2D4C9H0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9H0_PYTIN)

HSP 1 Score: 176 bits (447), Expect = 1.020e-42
Identity = 246/650 (37.85%), Postives = 341/650 (52.46%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAGAIADMLSRNCTLTSLNLGWNFLRGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNCDTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQGLVQHAVLCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEISTDR-------GVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
             V  M +GDE+    A  L  L  V  L   +NR  DRG  AI+  + +     H+DLS+N+V  DAA  L  Y+ +  C L+SL + +ADIDD E   F  AL SN SL  +DL  NLIG +E + VV+         VT   A+A MLS N TLTSL+L WN+LR           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    L  A+  ++  E  L ++M+ C+    D   FD +  TG Y LN+ IPY R VA ELLRIAN K    F S+ HI           + G++    +       R  +   A+ R+L            GI  +    +++++ +   L+ D                 ++ FF  L    D D  G +   +L    + L +   +  +   +++YD D +GSI++ EF   M + +L        V   +     ++P  G L + FV           +STD        GV  LI N+  S +   + ++ E+    SG +F +++AQ +L++VS  ++I  AV IL+P +   +   + +D NL    + +L+ ++G+A   ILG+ +G
Sbjct:  234 NVSHMSIGDELAMVFAACLLELPMVTGLNVRNNRLEDRGIQAIIDVLVAKKDLYHIDLSENKVDGDAAASLAAYISSSGCALQSLRLSRADIDDGELAPFAKALQSNRSLQLLDLSRNLIGNTENLNVVQPSI------VTGGEALATMLSINSTLTSLDLSWNYLRLGGAIEIGKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLHAV--ASCSERQLQISMEGCNFDLSDADAFDPSETTGNYNLNMSIPYERAVALELLRIANTKQGCKFLSITHIPPGA-------KQGHSIKTEL-------REGESADARRRLL---------KTAGILTDTRADNEVLREYR--LDPDS----------------LTEFFHEL----DQDGSGFIDQAELARGMRQLGIDFRDDDVPRYVAQYDLDGTGSIELPEFLELMASFNLAGDHFSRQVYDVERNIPLEIPTEGQLIIDFVDF--------HVSTDHDNAHSQEGVERLIANISNSKS---KSQMLEMG--KSGLYFRANEAQLLLDSVSDCFEITQAVMILLPNMVDPKSAYMLIDQNLTVSQRVRLQHLMGSALQPILGLATG 817          
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Match: A0A662Y9C0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y9C0_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.890e-42
Identity = 230/649 (35.44%), Postives = 325/649 (50.08%), Query Frame = 1
Query:    1 QVGGMGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCSHLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAALGSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAGAIADMLSRNCTLTSLNLGWNFLR--GDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEALCVAMRMSTRDEGNLIVNMKNC--DTSHKDETLFDDASATGEYELNLQIPYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPIDPRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKLLEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILFQALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQGLVQHAVLCA--QDGKEWQVPHNGTLRLSFVQEPSSYRTLGEISTDRGVAGLIVNMRQSPTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQLASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG 1929
             V  M +GD++    A  L  L  V  L   +NR  DRG  A++  V + P   HLDLS+N+V   AA  L  Y+ +  CKL++L I +AD+DD E   F  AL SN SL  +D+  N +G SE + VVR         +T   A+A M+S N TLT+L+L WN+LR  G         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                GG AL  A   +  D   L V+++ C  DT+   +  FD A  TG Y+LNL++PY R +A ELLR+AN K    F S+ H  G+      +             RV++    +G  A+ ++L            GI  +  V S   ++ ++ L++                    S  E LF   D D  G +   +L    + L L   +  +   ++ YD D +G+I+++EF   M + +L +     A  C   +  + +++P  G ++L FV    S        ++ GV  LI N+  S           LA   +G  F +H+AQ +LEAV    D   AV  L+P +  ++     ++ NL    + +++ ++G A   +L + SG
Sbjct:  237 NVSHMAIGDDLACVFAACLLDLPMVTSLNMRNNRLRDRGLQALIDVVVTKPDLFHLDLSENKVDGQAAQALAAYLGSATCKLQTLRISRADVDDGELVPFARALHSNRSLQTLDVSRNSVGNSEHLNVVRPSI------ITGGEALATMISINHTLTALDLSWNYLRLAGAVEIGRALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPLTHLALDGNPLGNMGGRALLHAAA-ACADCKQLAVSLEGCNFDTAADGDNDFDPAEPTGSYDLNLEVPYERAIALELLRVANTKQGCKFLSIVHTPGSSKQRRTI-------------RVELRETQEGADARRKLL---------KTAGILSDMSVPSA-REMQSRHLDR--------------------SSLEELFHELDCDASGFIDEHELCAGMRKLGLQFRDDDVPRYVALYDLDGTGTIELDEFVELMESFNLNEADGGFARECVDLETNRRFEIPTEGRMQLDFVDLHVSAGN-DSAHSEAGVERLIENIAASTNKTQM-----LAMAKTGLVFKAHEAQLLLEAVRDVCDTSQAVTTLLPNMVDARNTYALLEHNLSAAERLRVQHLMGQALPPMLALASG 829          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10320.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPR4_ECTSI2.450e-23284.35Hypothetical leucine rich repeat calcium binding p... [more]
D7FPR5_ECTSI4.280e-5597.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WJ75_GLOUD8.450e-4837.17Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XZU4_9STRA1.510e-4639.69Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A225W800_9STRA6.860e-4536.69Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A3R7K1C4_9STRA2.720e-4436.96Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2P4XG99_9STRA3.100e-4335.82Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
G4ZX23_PHYSP5.480e-4336.35Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A2D4C9H0_PYTIN1.020e-4237.85Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662Y9C0_9STRA1.890e-4235.44Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10320contigEcto-sp8_S_contig10320:8..6512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score679.5
Seed ortholog evalue1.5e-192
Seed eggNOG ortholog2880.D7FPR4
Model size1929
Hectar predicted targeting categoryother localisation
Exons14
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size1917
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.6030746-UTR-Ecto-sp8_S_contig10320:7..191681143130.6030746-UTR-Ecto-sp8_S_contig10320:7..19Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10320 8..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.6133773-CDS-Ecto-sp8_S_contig10320:19..3001681143130.6133773-CDS-Ecto-sp8_S_contig10320:19..300Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 20..300 +
1681143130.6223738-CDS-Ecto-sp8_S_contig10320:455..5791681143130.6223738-CDS-Ecto-sp8_S_contig10320:455..579Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 456..579 +
1681143130.6308951-CDS-Ecto-sp8_S_contig10320:1018..12011681143130.6308951-CDS-Ecto-sp8_S_contig10320:1018..1201Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 1019..1201 +
1681143130.6420338-CDS-Ecto-sp8_S_contig10320:1518..16231681143130.6420338-CDS-Ecto-sp8_S_contig10320:1518..1623Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 1519..1623 +
1681143130.6498413-CDS-Ecto-sp8_S_contig10320:1972..20351681143130.6498413-CDS-Ecto-sp8_S_contig10320:1972..2035Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 1973..2035 +
1681143130.6576543-CDS-Ecto-sp8_S_contig10320:2282..24231681143130.6576543-CDS-Ecto-sp8_S_contig10320:2282..2423Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 2283..2423 +
1681143130.6659822-CDS-Ecto-sp8_S_contig10320:2968..30941681143130.6659822-CDS-Ecto-sp8_S_contig10320:2968..3094Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 2969..3094 +
1681143130.6855464-CDS-Ecto-sp8_S_contig10320:3344..35181681143130.6855464-CDS-Ecto-sp8_S_contig10320:3344..3518Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 3345..3518 +
1681143130.6986885-CDS-Ecto-sp8_S_contig10320:3908..40641681143130.6986885-CDS-Ecto-sp8_S_contig10320:3908..4064Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 3909..4064 +
1681143130.7107182-CDS-Ecto-sp8_S_contig10320:4599..47071681143130.7107182-CDS-Ecto-sp8_S_contig10320:4599..4707Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 4600..4707 +
1681143130.7261066-CDS-Ecto-sp8_S_contig10320:5150..52881681143130.7261066-CDS-Ecto-sp8_S_contig10320:5150..5288Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 5151..5288 +
1681143130.735023-CDS-Ecto-sp8_S_contig10320:5766..58921681143130.735023-CDS-Ecto-sp8_S_contig10320:5766..5892Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 5767..5892 +
1681143130.743715-CDS-Ecto-sp8_S_contig10320:6199..63051681143130.743715-CDS-Ecto-sp8_S_contig10320:6199..6305Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 6200..6305 +
1681143130.7532394-CDS-Ecto-sp8_S_contig10320:6426..65121681143130.7532394-CDS-Ecto-sp8_S_contig10320:6426..6512Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10320 6427..6512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10320.523.1prot_Ecto-sp8_S_contig10320.523.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10320 20..6512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10320.523.1

>prot_Ecto-sp8_S_contig10320.523.1 ID=prot_Ecto-sp8_S_contig10320.523.1|Name=mRNA_Ecto-sp8_S_contig10320.523.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=639bp
MGLGDEIMTSLATVLPILGNVERLVAFDNRTTDRGTHAIVKAVQSLPLCS
HLDLSQNEVGVDAANELREYMRNRRCKLRSLAIRKADIDDDECREFMAAL
GSNISLLEIDLEGNLIGKSETMKVVRTKRPLGLLKVTSAGAIADMLSRNC
TLTSLNLGWNFLRGDSAVTVAQSLQHNRSLQSLSLRHNSFSDHASQMLAV
SLFENDTLSSVDLSHNSVTPSAAMVLAFALKTNATMKYLDLSGNRIGQNG
GEALCVAMRMSTRDEGNLIVNMKNCDTSHKDETLFDDASATGEYELNLQI
PYHRVVASELLRIANCKPTAHFRSLKHIVGNKVTNLKLHRSGNAAVAPID
PRVDVTRRIKGCIAKGRMLGLGLVSEYADALGINPEADVASKLMQIWNKL
LEKDRKRGNHDNGDSGDGDFVVSSFFEALFMLADNDEKGELIFGDLEILF
QALKLPHSEARLRHVMSKYDADHSGSIDVEEFRHYMVATHLKQGLVQHAV
LCAQDGKEWQVPHNGTLRLSFVQEPSSYRTLGEISTDRGVAGLIVNMRQS
PTDDARKRLFELATCNSGTFFTSHQAQGVLEAVSSSYDIIDAVAILIPQL
ASSQECSVFVDSNLDHRAKFKLRFMIGAAWGAILGMPSG
back to top

mRNA from alignment at Ecto-sp8_S_contig10320:8..6512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10320.523.1 ID=mRNA_Ecto-sp8_S_contig10320.523.1|Name=mRNA_Ecto-sp8_S_contig10320.523.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6505bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10320:8..6512+ (Ectocarpus species8 EcLAC_412)
CAGGTGGGAGGAATGGGACTTGGTGACGAGATTATGACCTCCCTGGCGAC AGTATTGCCAATTCTGGGGAACGTAGAGCGACTGGTTGCATTCGACAACC GCACGACCGATCGTGGAACACACGCCATCGTCAAAGCTGTGCAAAGCCTA CCACTTTGCTCCCACTTAGATTTGAGCCAAAATGAAGTGGGAGTCGACGC GGCGAACGAGCTGCGAGAGTACATGAGAAACCGGCGGTGCAAGCTGAGGT CGTTGGCTATTCGTAAGGCGGATATCGACGATGATGAGTGCAGGTGACGA GCCATCAAAATGTCTTCGACCGCCCATTTATCCCAACTACCATCTGTTGG TGAGTCGCGTAACCTAAATGCTAGAAAAAAATTAAGTTTCTCTGAGTGGA ACTACACACTAGTTCCCTTGCTGTTTGCACCGGCCCTCACTGAGACAGAG AGTTCATGGCAGCCTTAGGGAGCAACATCTCTCTGCTGGAGATCGACCTC GAGGGCAATCTCATCGGGAAGTCAGAAACAATGAAGGTTGTGCGTACTAA GCGTCCTCTCGGTTTGCTAAAGGTCGATGGAATGATAACGGCCAGGTAGT TGGGTTTAGTTGATTGTTTTCTTGTGCACGGCAAAATGTTATTGTTGGCA TTGTTAGTTAGGTAGATTATTTACGACTACGTCCTGTTCTGCGTGGCCAG TCAACGCTGAAGACGACCCCAAATTGTACCCGCACACGCAACGCCTAAGG AGCTGTTGAGATTTTGCTTTATTGTCGCGATGTGCGTCTATCAACAACGC ACCTCAAAGAATACTAGCGGTGCACGTAGCCTAGCCAAGTTGTTTCACTG AAGGTTTACCTTTCCCAGGAAGATCTGAAATGAGAGCGAATGGGAATGGG TTATCTTCTACGGCGCTATGATAACTGTGTGCTGTGATATTTGAACGATA AGTGCATAATGGCGGTACGATCGTGGTTGCCAACGGCAAAACTGGTTAAC TTTTTTCGTAGGTGACCAGCGCTGGAGCCATAGCAGACATGCTATCGAGG AACTGCACCCTCACAAGCCTCAACTTGGGATGGAATTTCCTCCGGGGAGA TTCGGCAGTGACAGTGGCGCAGTCTCTGCAGCACAACCGCAGCCTTCAAT CGCTGAGCTTGCGTCACAACTCATTCTCCGACCACGCCAGCCAGGTGCAG TGGTCTCCTCTACGACACGTATTTGCAAGGCGACGTTCACTGTCGTAGTA GTAGTAGGTTCCCTTAATCACTCACGGCGGTTTGTCTGACAGAGCTCGTC GTGCTGAAAGCATGCTTGTCTGCGATCAAGAAGGGACCACCCTCTCAATC AGCTTGCAAGGGCGTGGCAAATACTGGTCGTTCGCTAATTTCTACGTTGG GCGAGCAACGGACAAGTGATTGGTTCGGTGGTTGCTTGTGGCGTAGACCA AAACACCTTTTCACCCCCTGGTCGCCTACCCTCCCCCTTTCTAATACTTT CCGGGCTAAAGATGCTGGCGGTTTCGCTCTTCGAGAATGACACGTTGTCG AGTGTGGACCTGTCACACAACTCGGTGACCCCATCGGCTGCCATGGTCCT GGCATTCGCACTGAAGGTATCAGGTTTGGCTCAGGCTGTGTACTCGGCCA GTAAAGGCCAATGAGGGATGGGTTTGCGATTCCACAGCCAATTCTAGCTT TGCAAGGGGTATTTCAATCCCCGTCCTCGGAAGGGCATGGGTCGGGGCTA TCTAGGTCTTCCAGCACAGTTAGCTATCTGTCTTTCCGTTGAAGAAAGTC GAACGTGTGTGCACAGCATTTTAAGTTGACATGTGGTTTTATTGCTTGTG CTGGTGCTGGTGCTGGTGTTGGTGTTGGTGCTGTTCTCTTTCGAGGCACG GTTCTCTGCATACTTGCCGTTGCCAAGACTCTCCATGCCCACAACGACGT TTCTCCTGCATTCAGACGAACGCAACCATGAAGTACTTGGACCTTTCTGG AAATCGCATCGGACAGAACGGGGGCGAGGTGCGTGAGCTACTTCCTACGT CCCTATTCTACATGGTAGCGTTTTCGTTCGAACACAGATCCGAGAAATGG TGCCGTTTGCGTGCACTTGAAGTTGTATTGTGTTCCGGTTGCTTCGAACA CACTTCATGCCGGCATGAACCCGTTGTTGTGTGGGCAGAATTACAAAACA TACTCCCTACATTTGTTCTCAAAAACCGTACTCAGATGGCTCATTTTGCT GCCCCCACCCCCCCACCGGTTGCAGGCATTGTGTGTGGCGATGCGAATGT CCACCCGAGACGAGGGGAATCTGATTGTCAACATGAAGAATTGCGACACG TCGCATAAAGACGAAACGCTTTTCGATGACGCGAGCGCAACTGGAGAGTA TGAACTCAACCTCCAGGTACCAAGTTGCGGGTCCGTTTAGCACGCGGTCA ACGCGTGATCATTTCTTCGAGCAGGAAGATTTTCCTTGACTGGCTGGTGC CCTCCTGTAGTGGCTACGTCGTATATTATTGTCAGGCGGTATTCGGGCCT CAGAAATAGCCAAGTCATGCCATCCGTCGCGAAAAGAACGTCCTTGTTAT AGAGCCGTACTTTAGCTACCCGCTACGTGTTACATCCGTGCACAGTCAAT GGTGGGGCAGACGTATTCGCCTGGCAGATTTCAGCGTGCATTTCTTTGTT AACAAGTTTCGAACAGGTATTACATTTTGCTCATTATCCGTGTCTTGCGG TTTTTTATCCCGCCCTTCTTGCTAAGGTTATGTCTAACAAAAGTAGGTGC GAATTTCCAACTCTAACGACATGTTCGAGCAGGCACGGCAGCGGCTTTAA CTTTAACAATGCGTTTTTTTGCTTTGATTCCAATCCGTTTCGCCCTCTCT CCTCGTTCGACGTGCGGCTCAACAATATGGCGCCCTTGGCTGTATTTGGG GTATTTCCAAGATACCGTACCACAGAGTCGTGGCATCAGAACTACTTCGA ATAGCTAATTGCAAGCCAACGGCGCACTTCCGAAGCCTGAAGCATATCGT GGGCAATAAAGTGACCAACCTCAAGCTCCACAGGTCTGTTCTGAGTTACC CGTTCGACGCGATTCTTATGCAAACATTTTGATCGGGATATGATATGAGA TGGAACACAATCGATGAGCGCCAGTTCAAAAGGCGAAACTCAGCGTACCT TCATCTGTATGTGCTTTGAACTAACTGGATAGATTGGCATTTTGTTCGCC CTTGTCTAACCATCGTAGGATGCCAAATGAACGACGACGTTGAGGCGGCA TGATGTGCTCATACATATTATTTTGTTGCACAGGGAGGGCAACGCAGCGG TTGCACCAATCGATCCCCGGGTGGATGTGACCCGTCGAATCAAGGGATGC ATAGCAAAGGGGAGAATGCTGGGACTGGGGCTCGTCTCTGAGTATGCAGA TGCGCTTGGAATCAACCCTGAAGCAGATGTTGCGAGCAAGCTGATGCAGA TTTGGAACAAGGTGGGTGTATTCTGGCTGTTGTTGGCGGCGATACCGTTC CAGCAACCGCATACGTCAGAGACTTGTCTGGTCTGTGCAATCTCCAACGT GGGGTAGTTCGAAATCAGGTTTGCTGTGAGTCCTCTTGCATTTCTTGAGA TGCGTTTGGCACAGATATCCACGCCCGTGTTCACGACCGCTTGTGTTTCG TGGTTTCAATTCTTGCGTGGTTTGAGGGTCTGTGACTTTGTGGGTGTCAC TCGCCTTTGTTTTGCAGTATGCATATGCGGCATGGCAATACATGCAATAT ACCACCCAGCAAAGCTGTTGGACTGCGCGTAAGGCTAAAATGACCTACTG TACAGTGGATCGCCACGTTGCGCCCCTTTCACACGCCCTCTACGCCCAAA GCTTTTGGAGAAAGACCGGAAGAGAGGAAATCACGACAACGGAGATTCGG GGGACGGCGACTTTGTAGTCAGCAGCTTCTTCGAGGCGCTTTTCATGCTC GCCGACAACGACGAAAAAGGGGAACTGATCTTCGGAGATCTGGAGATTCT GTTTCAGGTAAATTTGAACATTGACCTATTGGACCATGGAATGAATGACC TGAAGCCCCTGATGGCAAGCACCAAGTATAGTCTAGTCTTGCAACGCCGT TGACATGGGTGTCCTCCAAGTAGAACTAGCGGAGGGGGCGCTTTTGTCAT GCTTAGCTGTTTATTGACCTCGTTGTCTCTTTTGAGATGGAGATTCGTTC TTGCTCCCTGTACATAGAAGCACCGTGAATCTACATTTCTATCATGTTTC TTTCAGTTAAATTCCCTTCTCGTGCTGCGGTGCAATACTCGCGGTTTTGT CACACCCTTGTTCTACATTCTATGATACGCACGTTCCAACCCTGCCGTCA AAGTGCGGGTCGTGAGTACACTCATCCGTTCATACCTTCGAGTGCCTTCA CCTTCTCCACTACTTTCGATGTGTGCATCTCAGGAAGCTACCGGAGGGAA GAAGGGTGAAGTTTAGAATGCAATTTTCCGGGTTGGTGCCTTTGTCGAGC TAATGGCCGAACTCCCTCCACCTGCCTGTTTTGGTTCCCTAGGCATTGAA ACTGCCACACAGCGAGGCACGCTTGCGCCACGTGATGTCAAAGTACGATG CTGACCACAGTGGGTCTATCGACGTGGAAGAGTTTAGGCACTACATGGTG GTGGGTTCCCTTATAGGGTTGACCTGTGAGACGGCCTTCGATGCTCGTAT GCATATCGTGACGTATAGTGCTGTGCAACATCTGAGAAGCAGTTCAGCGA GCGGGACTTCTTTGCGCTGGGACTTTTGCTGGTACGACGAATCCCGTTCG GACATACCTGTTGTGACCAGGCTGTTGAAACGATTTTCGCCTGGTCTGTA TGGACGGAAGTTGTTGATCACACCGTTGACCGAAGCGCTCCTTATTCTGG TGTACAAATGTTCCAGACCATTGGCCTAGCAACGAAAGTCTAATAGCTTT CTCTATGGATTGGACATGTCACCCTTGCAGTTTAGACAACCTTGACCTTT CGCTGGTGAATGTTTGCAGGGATAGTAGTAGCAAGGACAAAATGCTTGCC CCGGCATCCGATGCCTCGTTCTTGCTGTGTGTTTTGCCGGCAGGCAACCC ACTTGAAGCAGGGCCTCGTCCAGCATGCCGTACTTTGCGCACAAGACGGG AAAGAGTGGCAAGTCCCTCATAATGGAACCCTACGCTTGTCTTTTGTCCA GGAGCCTTCGTCCTACCGGACGCTCGGCGAGGTGTGCGAAAGAGACCAAA TGTTTAGTGAGGTTTCTCGAATCTCGGTCGTGTATGCACGTCAGACAAGA AACATTGGGCTTTCTATTGACATTTGTTTAATTTAGAGGTGCATGATCCC TTTAGCTAGTCGAGGAAGACGGTGGGCGACTCGAAGAAGGCTGGAGTACA AGTAACATGTCGACGTGCGACTGTCAATTTTTCAAGCCAGATTCAGTGAT CCTAAGGCCGGATGGATATTCAACGTTTCGTTGGTTGTCGTGATGATATC GAAAACCCAAATCGACTTCTATCTATTGTCTCCCCATGCGTCCTCTTTGA GACAAAGGAACCGATATCATGGCCACATGCTGGACCAAATTTCTGAAAAC AAATAATATATCATGTATGAGTCTATGCCCAGAAAAAAATTCCAAGATCT AGTTGCGACGACAACGACAGTATCAACAACAAATATCAAATCCCTCCCAC TCGGCCCAGATTAGTACGGATCGTGGAGTGGCTGGCCTTATCGTCAACAT GCGACAATCGCCCACCGATGATGCAAGAAAGCGTCTTTTCGAGCTTGCCA CCTGTAACAGCGGGACATTCTTCACTTCACACCAAGTGAGACGAGTTGAT ATGAGGCTGACATAAAGCGGTACCCTACCAAGCACTCAACACCTTTGCTG TACGCAGCGCAGTCGTGTCGTGTAACCGTTTTCCGCTTAGGTGATTGCGC ACGCCTTTATTGTCGACGACATGGACTACCTGGTATATTCATCTACGATA CGGACCCCACTGCTGCACGTCTTTCGGTCTACCTACACTTGTGTCCTGCA TTCGCTTGTGCCTCACTTCTTTGATATTCTCGATTCCCCCCGTTTGTTTC TGAGGATGATGCCCCTCAATCGATCTCGGCGGTCTTGATCAGGCTCAAGG CGTGCTGGAGGCTGTCTCGAGCAGCTACGACATCATCGACGCCGTGGCAA TATTGATACCTCAGCTGGCCTCGAGCCAGGAGTGCTCCGTATTTGTCGGT GAGCGAATGCTCTGTCGAGACTGAGAAATGTGAGGAGTGTCATATCTGCG GTTCTCTGCCAGCGTAGCAAACATGTTTTCCACACACGCATCGGTTATAC CCCACTCTTTCTGCTTTAGACTCCAACCTGGATCACCGTGCCAAGTTCAA GCTCCGTTTCATGATCGGCGCGGCGTGGGGAGCCATCCTGGGGATGCCGT CAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10320:8..6512+

>mRNA_Ecto-sp8_S_contig10320.523.1 ID=mRNA_Ecto-sp8_S_contig10320.523.1|Name=mRNA_Ecto-sp8_S_contig10320.523.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1917bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10320:8..6512+ (Ectocarpus species8 EcLAC_412)
ATGGGACTTGGTGACGAGATTATGACCTCCCTGGCGACAGTATTGCCAAT
TCTGGGGAACGTAGAGCGACTGGTTGCATTCGACAACCGCACGACCGATC
GTGGAACACACGCCATCGTCAAAGCTGTGCAAAGCCTACCACTTTGCTCC
CACTTAGATTTGAGCCAAAATGAAGTGGGAGTCGACGCGGCGAACGAGCT
GCGAGAGTACATGAGAAACCGGCGGTGCAAGCTGAGGTCGTTGGCTATTC
GTAAGGCGGATATCGACGATGATGAGTGCAGAGAGTTCATGGCAGCCTTA
GGGAGCAACATCTCTCTGCTGGAGATCGACCTCGAGGGCAATCTCATCGG
GAAGTCAGAAACAATGAAGGTTGTGCGTACTAAGCGTCCTCTCGGTTTGC
TAAAGGTGACCAGCGCTGGAGCCATAGCAGACATGCTATCGAGGAACTGC
ACCCTCACAAGCCTCAACTTGGGATGGAATTTCCTCCGGGGAGATTCGGC
AGTGACAGTGGCGCAGTCTCTGCAGCACAACCGCAGCCTTCAATCGCTGA
GCTTGCGTCACAACTCATTCTCCGACCACGCCAGCCAGATGCTGGCGGTT
TCGCTCTTCGAGAATGACACGTTGTCGAGTGTGGACCTGTCACACAACTC
GGTGACCCCATCGGCTGCCATGGTCCTGGCATTCGCACTGAAGACGAACG
CAACCATGAAGTACTTGGACCTTTCTGGAAATCGCATCGGACAGAACGGG
GGCGAGGCATTGTGTGTGGCGATGCGAATGTCCACCCGAGACGAGGGGAA
TCTGATTGTCAACATGAAGAATTGCGACACGTCGCATAAAGACGAAACGC
TTTTCGATGACGCGAGCGCAACTGGAGAGTATGAACTCAACCTCCAGATA
CCGTACCACAGAGTCGTGGCATCAGAACTACTTCGAATAGCTAATTGCAA
GCCAACGGCGCACTTCCGAAGCCTGAAGCATATCGTGGGCAATAAAGTGA
CCAACCTCAAGCTCCACAGGTCTGGCAACGCAGCGGTTGCACCAATCGAT
CCCCGGGTGGATGTGACCCGTCGAATCAAGGGATGCATAGCAAAGGGGAG
AATGCTGGGACTGGGGCTCGTCTCTGAGTATGCAGATGCGCTTGGAATCA
ACCCTGAAGCAGATGTTGCGAGCAAGCTGATGCAGATTTGGAACAAGCTT
TTGGAGAAAGACCGGAAGAGAGGAAATCACGACAACGGAGATTCGGGGGA
CGGCGACTTTGTAGTCAGCAGCTTCTTCGAGGCGCTTTTCATGCTCGCCG
ACAACGACGAAAAAGGGGAACTGATCTTCGGAGATCTGGAGATTCTGTTT
CAGGCATTGAAACTGCCACACAGCGAGGCACGCTTGCGCCACGTGATGTC
AAAGTACGATGCTGACCACAGTGGGTCTATCGACGTGGAAGAGTTTAGGC
ACTACATGGTGGCAACCCACTTGAAGCAGGGCCTCGTCCAGCATGCCGTA
CTTTGCGCACAAGACGGGAAAGAGTGGCAAGTCCCTCATAATGGAACCCT
ACGCTTGTCTTTTGTCCAGGAGCCTTCGTCCTACCGGACGCTCGGCGAGA
TTAGTACGGATCGTGGAGTGGCTGGCCTTATCGTCAACATGCGACAATCG
CCCACCGATGATGCAAGAAAGCGTCTTTTCGAGCTTGCCACCTGTAACAG
CGGGACATTCTTCACTTCACACCAAGCTCAAGGCGTGCTGGAGGCTGTCT
CGAGCAGCTACGACATCATCGACGCCGTGGCAATATTGATACCTCAGCTG
GCCTCGAGCCAGGAGTGCTCCGTATTTGTCGACTCCAACCTGGATCACCG
TGCCAAGTTCAAGCTCCGTTTCATGATCGGCGCGGCGTGGGGAGCCATCC
TGGGGATGCCGTCAGGT
back to top