mRNA_Ecto-sp8_S_contig103187.521.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103187.521.1
Unique NamemRNA_Ecto-sp8_S_contig103187.521.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103187.521.1 vs. uniprot
Match: A0A6H5KKR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR8_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 3.880e-62
Identity = 112/156 (71.79%), Postives = 126/156 (80.77%), Query Frame = 1 
Query:   49 IGKTLLKGLGKVAVSGPVGMALLAFDLLSMALDLWDPAGYNSVQAAGQIMTIRDNILDQYTEALANVGITNPLVADPTYNMDPESQGEFIENLVIDWFTSNISEFLSSSEERWAVMPGSECAAEYENEVARLEGLMESNVNFIQEMIHENTENTFL 516
            IGKTLLKG  KVAVSGPVG+A+LAFDL+S+ALDLWDPAGYN VQAAGQI ++RD+IL  YT  L N GITNPLV DP           F EN VIDWFTSNIS FLSS+E+RW  MP SE  AEYENEVARLEG+M+SNVNF+QEMI++NTENTFL
Sbjct: 1023 IGKTLLKGAAKVAVSGPVGLAMLAFDLMSLALDLWDPAGYNDVQAAGQIKSMRDDILSHYTRELTNEGITNPLVTDPL----------FTENRVIDWFTSNISAFLSSAEKRWETMPNSEATAEYENEVARLEGIMDSNVNFVQEMINQNTENTFL 1168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103187.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKR8_9PHAE3.880e-6271.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103187contigEcto-sp8_S_contig103187:3..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size516
Hectar predicted targeting categoryother localisation
Exons1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.544329-CDS-Ecto-sp8_S_contig103187:2..5181681143130.544329-CDS-Ecto-sp8_S_contig103187:2..518Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103187 3..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103187.521.1prot_Ecto-sp8_S_contig103187.521.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103187 3..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103187.521.1

>prot_Ecto-sp8_S_contig103187.521.1 ID=prot_Ecto-sp8_S_contig103187.521.1|Name=mRNA_Ecto-sp8_S_contig103187.521.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=172bp
MAAKVGAKLGGKIAVAIGKTLLKGLGKVAVSGPVGMALLAFDLLSMALDL
WDPAGYNSVQAAGQIMTIRDNILDQYTEALANVGITNPLVADPTYNMDPE
SQGEFIENLVIDWFTSNISEFLSSSEERWAVMPGSECAAEYENEVARLEG
LMESNVNFIQEMIHENTENTFL
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mRNA from alignment at Ecto-sp8_S_contig103187:3..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103187.521.1 ID=mRNA_Ecto-sp8_S_contig103187.521.1|Name=mRNA_Ecto-sp8_S_contig103187.521.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103187:3..518+ (Ectocarpus species8 EcLAC_412)
ATGGCGGCCAAAGTTGGGGCGAAACTGGGTGGCAAAATAGCCGTGGCCAT
CGGAAAAACTCTGCTCAAAGGCCTGGGTAAGGTGGCCGTTTCCGGCCCGG
TGGGCATGGCCCTGCTCGCCTTCGACCTGCTGAGCATGGCGCTTGATCTG
TGGGACCCTGCTGGGTACAACAGTGTACAGGCAGCCGGGCAGATCATGAC
AATTCGCGACAACATACTCGATCAGTACACAGAAGCCCTTGCCAACGTGG
GCATCACAAACCCTTTGGTCGCCGATCCGACGTACAATATGGACCCGGAG
TCGCAGGGGGAGTTCATCGAGAATCTTGTTATTGACTGGTTCACTTCAAA
CATCTCGGAGTTCCTCAGCTCCTCCGAAGAGAGGTGGGCGGTCATGCCTG
GCTCGGAGTGTGCCGCAGAATACGAAAACGAAGTCGCGAGGCTGGAGGGC
TTAATGGAGAGCAACGTCAACTTCATCCAAGAAATGATCCACGAAAACAC
CGAAAACACGTTTCTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103187:3..518+

>mRNA_Ecto-sp8_S_contig103187.521.1 ID=mRNA_Ecto-sp8_S_contig103187.521.1|Name=mRNA_Ecto-sp8_S_contig103187.521.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103187:3..518+ (Ectocarpus species8 EcLAC_412)
ATGGCGGCCAAAGTTGGGGCGAAACTGGGTGGCAAAATAGCCGTGGCCAT
CGGAAAAACTCTGCTCAAAGGCCTGGGTAAGGTGGCCGTTTCCGGCCCGG
TGGGCATGGCCCTGCTCGCCTTCGACCTGCTGAGCATGGCGCTTGATCTG
TGGGACCCTGCTGGGTACAACAGTGTACAGGCAGCCGGGCAGATCATGAC
AATTCGCGACAACATACTCGATCAGTACACAGAAGCCCTTGCCAACGTGG
GCATCACAAACCCTTTGGTCGCCGATCCGACGTACAATATGGACCCGGAG
TCGCAGGGGGAGTTCATCGAGAATCTTGTTATTGACTGGTTCACTTCAAA
CATCTCGGAGTTCCTCAGCTCCTCCGAAGAGAGGTGGGCGGTCATGCCTG
GCTCGGAGTGTGCCGCAGAATACGAAAACGAAGTCGCGAGGCTGGAGGGC
TTAATGGAGAGCAACGTCAACTTCATCCAAGAAATGATCCACGAAAACAC
CGAAAACACGTTTCTC
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