mRNA_Ecto-sp8_S_contig103186.520.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103186.520.1
Unique NamemRNA_Ecto-sp8_S_contig103186.520.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: D7FPY3_ECTSI (Peroxin-5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY3_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.630e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV
Sbjct:  532 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 579
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: A0A7S2FZA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZA0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.410e-19
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    4 LGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            LG SYVNELDS +AL NLKAWVEHNP Y GLEI  DEYSDGTLMDEV
Sbjct:   21 LGVSYVNELDSARALRNLKAWVEHNPNYHGLEIRQDEYSDGTLMDEV 67
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: A0A836CKH3_9STRA (Peroxin-5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.450e-18
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALG SYVNELDS +AL NLKAWVEHNPKY+GLE+  D YSDGTLMDEV
Sbjct:   35 ALGVSYVNELDSARALRNLKAWVEHNPKYAGLELKQDAYSDGTLMDEV 82
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: A0A7S3GZ50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZ50_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.390e-18
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALGTSYVNEL+S KAL  L+ WV HNP+Y G+E+ VDEYSDG+LMDEV
Sbjct:   68 ALGTSYVNELNSIKALETLRTWVAHNPRYQGMEVTVDEYSDGSLMDEV 115
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: A0A7S2RSH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSH8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.570e-16
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALG SYVNELDS +AL  LKAW+EHNP Y GLE   DEYSDGTLMDEV
Sbjct:  103 ALGVSYVNELDSFRALKTLKAWLEHNPAYHGLEFKEDEYSDGTLMDEV 150
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: A0A7S2WC76_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC76_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.430e-16
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALG SYVNELDS +AL  LKAW+EHNP Y GLE   DEYSDGTLMDEV
Sbjct:  490 ALGVSYVNELDSFRALKTLKAWLEHNPAYHGLEFKEDEYSDGTLMDEV 537
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: A0A8K1FP33_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FP33_PYTOL)

HSP 1 Score: 77.0 bits (188), Expect = 2.930e-15
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALG S VNEL+ Q AL NLKAWV+HNPK+ GLEI +DEYSDG+LMDEV
Sbjct:  467 ALGVSNVNELNPQGALKNLKAWVQHNPKFHGLEIQLDEYSDGSLMDEV 514
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: A0A812SRK5_SYMMI (PEX5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SRK5_SYMMI)

HSP 1 Score: 75.9 bits (185), Expect = 7.260e-15
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            +LGTSYVNEL+   AL +LK+WV HNPK+ GLE+A DEYSDG+LMDEV
Sbjct:  291 SLGTSYVNELNPSLALASLKSWVRHNPKFFGLEVAPDEYSDGSLMDEV 338
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: G4YT74_PHYSP (Peroxin-5 n=13 Tax=Phytophthora TaxID=4783 RepID=G4YT74_PHYSP)

HSP 1 Score: 75.9 bits (185), Expect = 7.480e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALG S VNEL+ Q AL  LKAWV+HNPK+ GLEI VDEYSDG+LMDEV
Sbjct:  470 ALGVSNVNELNPQGALKTLKAWVQHNPKFHGLEIQVDEYSDGSLMDEV 517
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BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Match: M4BV36_HYAAE (Peroxin-5 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BV36_HYAAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.480e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV 144
            ALG S VNEL+ Q AL  LKAWV+HNPK+ GLEI VDEYSDG+LMDEV
Sbjct:  465 ALGVSNVNELNPQGALKTLKAWVQHNPKFHGLEIQVDEYSDGSLMDEV 512
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103186.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY3_ECTSI1.630e-23100.00Peroxin-5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP... [more]
A0A7S2FZA0_9STRA1.410e-1982.98Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A836CKH3_9STRA1.450e-1881.25Peroxin-5 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A7S3GZ50_9STRA8.390e-1872.92Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2RSH8_9STRA4.570e-1677.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WC76_9STRA8.430e-1677.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1FP33_PYTOL2.930e-1575.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A812SRK5_SYMMI7.260e-1570.83PEX5 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
G4YT74_PHYSP7.480e-1575.00Peroxin-5 n=13 Tax=Phytophthora TaxID=4783 RepID=G... [more]
M4BV36_HYAAE7.480e-1575.00Peroxin-5 n=1 Tax=Hyaloperonospora arabidopsidis (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103186contigEcto-sp8_S_contig103186:40..183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score100.1
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog2880.D7FPY3
Preferred namepex5
Model size144
KEGG koko:K13342
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000268,GO:0003674,GO:0005048,GO:0005052,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016043,GO:0016558,GO:0016560,GO:0017038,GO:0031090,GO:0031903,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805
Exons1
EggNOG free text desc.peroxisome matrix targeting signal-1 binding
EggNOG OGsKOG1125@1,KOG1125@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.514578-CDS-Ecto-sp8_S_contig103186:39..1831681143130.514578-CDS-Ecto-sp8_S_contig103186:39..183Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103186 40..183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103186.520.1prot_Ecto-sp8_S_contig103186.520.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103186 40..183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103186.520.1

>prot_Ecto-sp8_S_contig103186.520.1 ID=prot_Ecto-sp8_S_contig103186.520.1|Name=mRNA_Ecto-sp8_S_contig103186.520.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=48bp
ALGTSYVNELDSQKALTNLKAWVEHNPKYSGLEIAVDEYSDGTLMDEV
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mRNA from alignment at Ecto-sp8_S_contig103186:40..183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103186.520.1 ID=mRNA_Ecto-sp8_S_contig103186.520.1|Name=mRNA_Ecto-sp8_S_contig103186.520.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103186:40..183+ (Ectocarpus species8 EcLAC_412)
GCGCTCGGGACGAGTTATGTCAACGAGCTAGACTCTCAGAAAGCGTTGAC
AAATCTCAAGGCATGGGTTGAGCACAACCCGAAGTACTCGGGCCTCGAGA
TAGCGGTGGACGAGTACAGCGACGGCACTCTGATGGACGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103186:40..183+

>mRNA_Ecto-sp8_S_contig103186.520.1 ID=mRNA_Ecto-sp8_S_contig103186.520.1|Name=mRNA_Ecto-sp8_S_contig103186.520.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103186:40..183+ (Ectocarpus species8 EcLAC_412)
GCGCTCGGGACGAGTTATGTCAACGAGCTAGACTCTCAGAAAGCGTTGAC
AAATCTCAAGGCATGGGTTGAGCACAACCCGAAGTACTCGGGCCTCGAGA
TAGCGGTGGACGAGTACAGCGACGGCACTCTGATGGACGAGGTA
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