mRNA_Ecto-sp8_S_contig103158.516.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103158.516.1
Unique NamemRNA_Ecto-sp8_S_contig103158.516.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig103158.516.1 vs. uniprot
Match: D8LRN1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.110e-21
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 PVALNAEQYGDSLMCGTCVEGTASGSGSGNNPIPSTFKAFITDK 132
            PVALNAEQYGDSLMCG CVEGTASGSGSGNNPIPSTFKAFITDK
Sbjct:  138 PVALNAEQYGDSLMCGACVEGTASGSGSGNNPIPSTFKAFITDK 181
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BLAST of mRNA_Ecto-sp8_S_contig103158.516.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.370e-12
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 PVALNAEQYGDSLMCGTCVEGTASGSGSGNNPIPSTFKAFITDK 132
            PVALNA QYGDSLMCG+CVEG  +G G G+NPI  TFK FI DK
Sbjct:  382 PVALNAAQYGDSLMCGSCVEGEGTGGGGGDNPI-GTFKGFIMDK 424
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BLAST of mRNA_Ecto-sp8_S_contig103158.516.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.100e-11
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 PVALNAEQYGDSLMCGTCVEGTASGSGSGNNPIPSTFKAFITDK 132
            PVALN  QYGDSLMCG CVEG  +G GSG++P+  TFK FI DK
Sbjct:  345 PVALNEPQYGDSLMCGACVEGEGTGGGSGSDPV-GTFKGFIMDK 387
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103158.516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRN1_ECTSI1.110e-2197.73Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KBW3_9PHAE3.370e-1272.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LGP4_ECTSI4.100e-1168.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103158contigEcto-sp8_S_contig103158:56..190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score93.2
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog2880.D8LRN1
Model size135
KEGG koko:K20628
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2D16Q@1,2SGXE@2759
Cds size135
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143130.3220034-CDS-Ecto-sp8_S_contig103158:55..1901681143130.3220034-CDS-Ecto-sp8_S_contig103158:55..190Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103158 56..190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103158.516.1prot_Ecto-sp8_S_contig103158.516.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103158 56..190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103158.516.1

>prot_Ecto-sp8_S_contig103158.516.1 ID=prot_Ecto-sp8_S_contig103158.516.1|Name=mRNA_Ecto-sp8_S_contig103158.516.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=45bp
PVALNAEQYGDSLMCGTCVEGTASGSGSGNNPIPSTFKAFITDK*
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mRNA from alignment at Ecto-sp8_S_contig103158:56..190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103158.516.1 ID=mRNA_Ecto-sp8_S_contig103158.516.1|Name=mRNA_Ecto-sp8_S_contig103158.516.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103158:56..190- (Ectocarpus species8 EcLAC_412)
CCAGTCGCCCTCAACGCGGAGCAGTACGGCGATTCGCTCATGTGTGGCAC
ATGCGTCGAGGGGACCGCCAGCGGCAGCGGCTCCGGCAACAACCCGATCC
CATCCACGTTCAAGGCCTTCATCACGGACAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103158:56..190-

>mRNA_Ecto-sp8_S_contig103158.516.1 ID=mRNA_Ecto-sp8_S_contig103158.516.1|Name=mRNA_Ecto-sp8_S_contig103158.516.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103158:56..190- (Ectocarpus species8 EcLAC_412)
CCAGTCGCCCTCAACGCGGAGCAGTACGGCGATTCGCTCATGTGTGGCAC
ATGCGTCGAGGGGACCGCCAGCGGCAGCGGCTCCGGCAACAACCCGATCC
CATCCACGTTCAAGGCCTTCATCACGGACAAGTAA
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