mRNA_Ecto-sp8_S_contig10310.510.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10310.510.1
Unique NamemRNA_Ecto-sp8_S_contig10310.510.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: D7G297_ECTSI (Formaldehyde dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G297_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 9.160e-143
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 1
Query:    1 MGRN-YPPADEFMFSPASLLPWALSLFAFVTSPCYGLRPRYLPPLPASPGTPTQPMSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            MGRN +PPADEFMFSPASLLPWALSLFAFVTSPCYGLRPRYLPPLPASPGTPTQPMSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM
Sbjct:    1 MGRNNWPPADEFMFSPASLLPWALSLFAFVTSPCYGLRPRYLPPLPASPGTPTQPMSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 201          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: F2UEK0_SALR5 (Formaldehyde dehydrogenase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UEK0_SALR5)

HSP 1 Score: 253 bits (645), Expect = 1.400e-80
Identity = 118/146 (80.82%), Postives = 129/146 (88.36%), Query Frame = 1
Query:  163 MSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            MS T GKPI CKAAVAW  N+PL VE +EVAPP+  EVR+KVIANALCHTD+YTL GQD EG FPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPEC   +C+FC S KTNLCPTIR+TQG+GVMPDGTTRFSI+G+PIYHFM
Sbjct:   18 MSTTAGKPITCKAAVAWEPNKPLSVETVEVAPPKANEVRLKVIANALCHTDIYTLEGQDPEGKFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPEC--GDCLFCHSEKTNLCPTIRSTQGQGVMPDGTTRFSINGEPIYHFM 161          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: A0A6G0WX48_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX48_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.410e-79
Identity = 115/146 (78.77%), Postives = 130/146 (89.04%), Query Frame = 1
Query:  163 MSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            +S T GK I+CKAAVAW  N PL +E ++VAPP+ GEVRVKVIANALCHTD+YTL+G+D EG+FP ILGHEAG IVESVG GVTSVKPGD VIPCYTPEC++ ECIFC+STKTNLCP IRATQGKGVMPDGT+RFSI+GKPIYHFM
Sbjct:   19 LSSTEGKVIRCKAAVAWKPNAPLSIETVDVAPPKAGEVRVKVIANALCHTDIYTLNGEDPEGLFPCILGHEAGAIVESVGPGVTSVKPGDHVIPCYTPECQKPECIFCESTKTNLCPEIRATQGKGVMPDGTSRFSINGKPIYHFM 164          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: A0A485LHU3_9STRA (Aste57867_21004 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHU3_9STRA)

HSP 1 Score: 250 bits (639), Expect = 8.110e-79
Identity = 117/149 (78.52%), Postives = 130/149 (87.25%), Query Frame = 1
Query:  154 TQPMSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            T  MS T GK I+CKAAVAW  N PL VE IEVAPP+ GEVRVKVIANALCHTD+YTL+G+D EG+FP ILGHEAG IVESVG GVTSVKPGD VIPCYTPEC++ ECIFC+S KTNLCP IRATQGKGVMPDGT+RFSI+G+P+YHFM
Sbjct:   25 TAAMSSTAGKVIRCKAAVAWKPNAPLSVETIEVAPPKAGEVRVKVIANALCHTDLYTLNGEDPEGLFPCILGHEAGAIVESVGPGVTSVKPGDHVIPCYTPECQKPECIFCESPKTNLCPEIRATQGKGVMPDGTSRFSINGQPLYHFM 173          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: A0A067BUB6_SAPPC (S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BUB6_SAPPC)

HSP 1 Score: 248 bits (633), Expect = 3.300e-78
Identity = 112/146 (76.71%), Postives = 130/146 (89.04%), Query Frame = 1
Query:  163 MSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            MS T GK I+CKAAVAW  N+PL +E ++VAPP+ GE+RVKVIANALCHTD+YTLSG+D EG+FP ILGHEAG IVESVG GVTSVKPGD VIPCYTPEC++++CIFC+S KTNLCP IR TQGKGVMPDGT+RFSI+G+PIYHFM
Sbjct:   20 MSSTAGKVIQCKAAVAWKPNQPLSIETVDVAPPKAGEIRVKVIANALCHTDLYTLSGEDPEGLFPCILGHEAGAIVESVGPGVTSVKPGDHVIPCYTPECQKSDCIFCESPKTNLCPEIRGTQGKGVMPDGTSRFSINGEPIYHFM 165          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: A0A418F391_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F391_9STRA)

HSP 1 Score: 246 bits (628), Expect = 4.610e-78
Identity = 114/145 (78.62%), Postives = 128/145 (88.28%), Query Frame = 1
Query:  166 SETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            S T GK I+CKAAVAW  N PL VE IEVAPP+ GEVRVKVIANALCHTD+YTL+G+D EG+FP ILGHEAG IVESVG GVTSV+PGD VIPCYTPEC++ ECIFC+S KTNLCP IRATQGKGVMPDGT+RFSI+G+P+YHFM
Sbjct:   23 SSTAGKVIRCKAAVAWKPNAPLSVETIEVAPPKAGEVRVKVIANALCHTDLYTLNGEDPEGLFPCILGHEAGAIVESVGPGVTSVQPGDHVIPCYTPECQKPECIFCESPKTNLCPEIRATQGKGVMPDGTSRFSINGQPLYHFM 167          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: W4H086_9STRA (S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H086_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.660e-77
Identity = 114/145 (78.62%), Postives = 128/145 (88.28%), Query Frame = 1
Query:  166 SETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            S T GK I+CKAAVAW  N PL VE IEVAPP+ GEVRVKVIANALCHTD+YTL+G+D EG+FP ILGHEAG IVESVG GVTSV+PGD VIPCYTPEC++ ECIFC+S KTNLCP IRATQGKGVMPDGT+RFSI+G+P+YHFM
Sbjct:   23 SSTAGKVIRCKAAVAWKPNAPLSVETIEVAPPKAGEVRVKVIANALCHTDLYTLNGEDPEGLFPCILGHEAGAIVESVGPGVTSVQPGDHVIPCYTPECQKPECIFCESPKTNLCPEIRATQGKGVMPDGTSRFSINGQPLYHFM 167          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: A9UXC5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UXC5_MONBE)

HSP 1 Score: 246 bits (627), Expect = 4.150e-77
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = 1
Query:  163 MSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            + E  GK I+CKAAVAW  N+P+ VE + VAPP+ GEVR+KV+ANALCHTDVYTL+GQD EG FPSILGHEAGCIVESVGEGVTSVKPGD+VIPCYTPEC   EC+FC+S KTNLCPTIR+TQG+GVMPDGT+RFSI+G+PIYHFM
Sbjct:   38 LGEYAGKDIQCKAAVAWEPNKPVSVETVTVAPPKAGEVRLKVVANALCHTDVYTLNGQDPEGKFPSILGHEAGCIVESVGEGVTSVKPGDRVIPCYTPEC--GECLFCESPKTNLCPTIRSTQGQGVMPDGTSRFSINGEPIYHFM 181          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: A0A024U2X4_9STRA (S-(Hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2X4_9STRA)

HSP 1 Score: 244 bits (623), Expect = 1.090e-76
Identity = 112/145 (77.24%), Postives = 127/145 (87.59%), Query Frame = 1
Query:  166 SETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            S T G+ I+CKAAVAW  N PL VE IEVAPP+ GEVRVKV+ANALCHTD+YTL+G+D EG+FP ILGHEAG IVESVG GVTSVKPGD VIPCYTPEC++ ECIFC+S KTNLCP IR TQGKGVMPDGT+RFSI+G+P+YHFM
Sbjct:   22 SSTAGQVIRCKAAVAWKPNAPLSVETIEVAPPRAGEVRVKVVANALCHTDLYTLNGEDPEGLFPCILGHEAGAIVESVGPGVTSVKPGDHVIPCYTPECQKPECIFCESPKTNLCPEIRGTQGKGVMPDGTSRFSINGQPLYHFM 166          
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Match: A0A1V9ZHJ2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHJ2_9STRA)

HSP 1 Score: 252 bits (644), Expect = 2.170e-75
Identity = 114/146 (78.08%), Postives = 130/146 (89.04%), Query Frame = 1
Query:  163 MSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANALCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCYTPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM 600
            MS T GK I+CKAAVAW  N PL +E +EVAPP+ GE+RVKVIANALCHTD+YTLSG+D EG+FP ILGHEAG +VESVG GVTSVKPGD VIPCYTPEC++++C+FC+S KTNLCP IRATQGKGVMPDGT+RFSIDGKPIYHFM
Sbjct:  515 MSTTAGKVIRCKAAVAWKPNAPLSIETVEVAPPKAGEIRVKVIANALCHTDLYTLSGEDPEGLFPCILGHEAGAVVESVGPGVTSVKPGDHVIPCYTPECQKSDCVFCESPKTNLCPEIRATQGKGVMPDGTSRFSIDGKPIYHFM 660          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10310.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G297_ECTSI9.160e-14399.00Formaldehyde dehydrogenase n=2 Tax=Ectocarpus TaxI... [more]
F2UEK0_SALR51.400e-8080.82Formaldehyde dehydrogenase n=1 Tax=Salpingoeca ros... [more]
A0A6G0WX48_9STRA1.410e-7978.77Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LHU3_9STRA8.110e-7978.52Aste57867_21004 protein n=1 Tax=Aphanomyces stella... [more]
A0A067BUB6_SAPPC3.300e-7876.71S-(Hydroxymethyl)glutathione dehydrogenase/class I... [more]
A0A418F391_9STRA4.610e-7878.62Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4H086_9STRA3.660e-7778.62S-(Hydroxymethyl)glutathione dehydrogenase/class I... [more]
A9UXC5_MONBE4.150e-7777.40Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A024U2X4_9STRA1.090e-7677.24S-(Hydroxymethyl)glutathione dehydrogenase/class I... [more]
A0A1V9ZHJ2_9STRA2.170e-7578.08Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10310contigEcto-sp8_S_contig10310:670..6863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score413.7
Seed ortholog evalue5e-113
Seed eggNOG ortholog2880.D7G297
Model size603
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00167,RC00320,RC00649,RC01715,RC01734,RC02273
KEGG koko:K00121,ko:K01070
KEGG ReactionR00527,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko05204,map00010,map00071,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map05204
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.alcohol dehydrogenase (NAD) activity
EggNOG OGsCOG1062@1,KOG0022@2759
Ec32 ortholog descriptionformaldehyde dehydrogenase
Ec32 orthologEc-16_001960.1
EC1.1.1.1,1.1.1.284,3.1.2.12
Cds size603
COG Functional cat.C
CAZyCE1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.9784808-CDS-Ecto-sp8_S_contig10310:669..8601681143129.9784808-CDS-Ecto-sp8_S_contig10310:669..860Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10310 670..860 +
1681143129.9901683-CDS-Ecto-sp8_S_contig10310:4390..45021681143129.9901683-CDS-Ecto-sp8_S_contig10310:4390..4502Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10310 4391..4502 +
1681143129.9988294-CDS-Ecto-sp8_S_contig10310:5181..52141681143129.9988294-CDS-Ecto-sp8_S_contig10310:5181..5214Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10310 5182..5214 +
1681143130.0080676-CDS-Ecto-sp8_S_contig10310:5816..59151681143130.0080676-CDS-Ecto-sp8_S_contig10310:5816..5915Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10310 5817..5915 +
1681143130.0196602-CDS-Ecto-sp8_S_contig10310:6695..68631681143130.0196602-CDS-Ecto-sp8_S_contig10310:6695..6863Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10310 6696..6863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10310.510.1prot_Ecto-sp8_S_contig10310.510.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10310 670..6863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10310.510.1

>prot_Ecto-sp8_S_contig10310.510.1 ID=prot_Ecto-sp8_S_contig10310.510.1|Name=mRNA_Ecto-sp8_S_contig10310.510.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=201bp
MGRNYPPADEFMFSPASLLPWALSLFAFVTSPCYGLRPRYLPPLPASPGT
PTQPMSETMGKPIKCKAAVAWAANEPLKVEEIEVAPPQKGEVRVKVIANA
LCHTDVYTLSGQDAEGMFPSILGHEAGCIVESVGEGVTSVKPGDKVIPCY
TPECKQAECIFCQSTKTNLCPTIRATQGKGVMPDGTTRFSIDGKPIYHFM
*
back to top

mRNA from alignment at Ecto-sp8_S_contig10310:670..6863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10310.510.1 ID=mRNA_Ecto-sp8_S_contig10310.510.1|Name=mRNA_Ecto-sp8_S_contig10310.510.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6194bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10310:670..6863+ (Ectocarpus species8 EcLAC_412)
ATGGGGCGCAACTACCCGCCCGCAGATGAGTTCATGTTCTCGCCCGCGTC ATTGCTGCCGTGGGCCCTATCCCTCTTCGCCTTCGTTACCTCGCCCTGCT ACGGCCTTCGTCCTCGGTACCTGCCCCCGCTCCCTGCATCCCCAGGCACG CCCACTCAGCCCATGTCCGAAACGATGGGAAAACCGATCAAGTAAGCAAC AGCAGCACCTACTTAGACTATAGTCCCGCCCGATCTACATATCTCCCGAT CGATGCAATCGTCCCTCAACAGCAGCCCCGTCAGGATCTCTCCTCGCGCA GCACACACTCGTATGTGTAGCTCTGCTGCGGGGTGTAGCTGGCTTGGAGG CCGCAGCAAGGATTTAGGACGTAGACGCAGCCTCCTCAAGATAATCCCGC GCAAAGGAATGGACGCGATTGCCCTTTAGAAAATGGTCTGTATTCCCGTG TATGGTCTTACATGTTCAACCAGGATCGATCCCCGCTGTAGTTTCAAGAG ATCCCACAGCAGCGGGACCAGAAGCACAGCTTCCAGCAGCAGCAGCTGCA GGAGCAGCACACTTTACGCTCGTTTGGTCGATCGCGTAGTTGGCAGCGGT GCTGCTCGTGCGCCGTCATATCTCCCCATTAACAAGTTGTAGGGGAGCAT GATTGTTGTGAGGCACGCGAATCAGGTGTACTGTGTACGGTGTCAAATAC TTCTGTATGTGCAACATGCGCCTTGCTCTCTCTCACTCCCCGCGTTGCTC TGCTCGCGTTCGCACTCCGTCCATGGGTTGTTGGCTTGGGTGGGTTTTCA CGGCAGCAGAATTGTACTGCATGTAAGCAGCAAGGATTAAGTGACACCTG GTAGGCACACCATAATAGGATCTCACCTAGCTGTATACGCTGTATCTTCG TATCTTCCGCCAGCCGTTCGTTGACGGCGGACTTCGCACTACAAAAGTTG ACGAAGACAGAAGACAGACCAGCAGTCTCTGCGAACGGCGTGAGAATGAC CAGACGGCAGCAGCAAGCATTTTTATTTGTAAAAATAGTCTACAGCAGTT GTCGACCTCTGCAGGAGCGTGGTAGAAAAATCACGCAAAGGGCGCTTGAC AACGTCCGCTTCGCAGTCGCCACACACTACGCTCTCGTCTAGGCTGTATG GCGATGTCAACTGCGTGTGCGGGTTGAGTTTTGAGAATATGGCAGCCCTC CCATACATAGGGGTCCAACAAAAAAAAAATTACAATATTTCGCGCGCGAA AAGAAGGGTCGGAGAGAGACGTCAAAGCAAGCGTAGATAGATATGGATGG AGCCTACGCCACCACGTGGGTCACCAGTGCGCACGCTCACACCTCACCCG ATACCACCAGTCAGTCAGGAGATGAATGGGAGCGCTGTTCAGCCCTCATC ATCATCAGCTCAGCGGCAGCAGTGCTGCTGCTGCGCATGGGTGCGCACTT GCTTTCTTCGCTTTCGCTACTAGCAGAGGGCAACGGGCTCTAGAAATTGG CCGGACCCCCACGACGTGTGTATTTGGCCGCCCTTGGCTTACAGCGCTGT GTACGTCTCACTTGTCTCTGTTTTTGGGGTGCGTCTGTTGTGGAAGCAAA GATCGGCCGGTAGACGAAGAGACTATAGACAGAGATCTGACTTGTGTGCA CTCGCTCGCATATTCCCTCGCTTACGCCGCTAGCGGTAGGCCTCGGGGTC TAGAAATAGCTTCCGACGCCAGCCATGATGTGTGCCTTTGGCCGGCCTTG CCCTACAGCAGTGTGTAGGCCTCGTTTTCTCTGTTGTGGGGATGCGGCTG TGCGGGAAGCTCCAAAGATCGGTAGGTTGAGGGTGATGCAGACGGACCGC GGATTGACTTGCGTCGTCACTCGCTTGTGCTGCCGACAGCAGGCAACGGG CTGCAAGAGTCATACCCAACGCCTCCCATCATGATGTATGCCTTTGGCTG TCCTTGGCCTACAGCAGTCCGTATACTGCTGTGCTGGTTGTATCGCATGT TGTCTACGTGATGAGTATGGTGCTGCTGTGCAAGAGGATTTCGGTGATTC TGCCGAGAGCGTCGTGCCCATCGCCCAATCATCTGTCTCTGTCTTACACA ATGTCTTACAAACTCGACGTGTGATTGGTGGGAGATAGGCATCTACCTGG CTCTACCCCTCTAAAACATAGATAATTGTTGGAAGTTCTTCCGTGTCTTA CAAAAAAATTGCCCTATTTATGGGTGCTCTGCCGAGAATATTGAGACGAC TGCTTGTGTGTGTGAAAAGTTGTGCTCATTTGTTCGAAGAGAGAGAGAGG ACGCACAATGCAACGGACTAGAGTAGCGGCTTCGGTTTAAAGACGTTTAA AGTTTAAAGTACGGGTTTAACAGAGGTGAACTGGCTTGGCACTTGGCACT GGCACGAGCCTTGGCCGACCAATCAGAAAGCGTTAGTCCTAAAGATCTAC TATCAATGTATACACTACTGCGATATTGAGGAGGGCTTCTCCCCGATATT TTTCTCGTTGATCCATTAGGGGATGTGTTGGTAGATTCATACCCATGGAT TATTGTTTCGTGCTTAGCACCAGCTGGCGTCACTGACTGTGTAAAATTCA ATGTTAGGCGTGAATTGACTCAAAATAAGCCCAGCGTCCAGCAGTTTATT TGTGTAACGACTACGGCATGCACGACTATTGAGTACACCCCCCCCCCCCC CATTCATTGCTGTGAAGACTTATCCCATCCCCTGGTATTTTCTCGAACCG GTAGTCTTTCTTTGATTGCATGTTTTTTTCTTGTAACACATGCAGGTAGA TGTGGCAAGAAACAACACCGCAGCAAAAACAACGTCTAGTTATTGTTCGG AGACCATGCACAGAAATGTACTACTAACACCACCGGAAAATGTGTGTTCT GCGTGTGAGGAGCAAAAAAAAATAATCCTGTAGCATACATACGCCAGCTA CATCTCTAAAATTGTTTAACAGGATCTCTTGTACATCATTCCAGCAACTC CAACCAACCACAGCATGTGCTTCAAAGGAGTAGTAACTTATGTGCCGTAT CAAGATGGCAAAACAAGAAACATTAACCCACAGTCAGGATCTCCACGCCC CCCCTCCAGTAGCAGTGCCGGGAGGCAGGGGCTTTTTCGCCACGTTGTTG TGGTTTCATCCCGTGTCTTGTTCTCTTTTCGAGTGGATAGGCGTTTGTTT CCGGTTGAGCCAAACACCGCCGTTGAGGCGGTGCTGTTTTCCGCGCCGGT TGCCTTCACCTCGAGACACACGCTAACTCCCTCGGTTGCATCGATCGATC GGTGAAAAACTGAAACAACAACGAAACACCAATATTGTGTTTTGTTTGTG CCTTGATTCATTCTGCTTCATCGAGGTCCTCCTCGTGAGCCAACCACTCC GTCGTGTTTCGTCGAGCAGTCCGCTCCCGGACCGCCTTCGCAAAAAATTA AGTTTGTAAGGAAATATATAGAACAGCGAGGGGGTACGCAGACCCTATCC CTAACTCTAAAACCCTAACCCAACTTCCCCGATTGCACACTTTGTCTGAC ATGTGTACTTACTTGGTAGAAAAAAAAACTGCAAAGGCTGCTGTTCGCTC CACCCACGCCGCCTGCGCCTCCTCTCCCATGTCTCTGTCTCTCCGTCTTT GTCCCCCCTTACCCCTCCCTCTCTCCTCTGTCTGTCTGTCTGTCTGTCTG TCTAACTTTCGTGGAAATCAGATGCAAGGCGGCGGTGGCTTGGGCCGCGA ACGAGCCTCTGAAGGTGGAAGAGATCGAGGTGGCCCCTCCTCAGAAGGGC GAGGTCCGCGTCAAGGTTATCGCCAATGCCCTGGTGAGAAGACTAGTTGT GCTGCCCCCCCCCGCCCCCCGCCCCCCTTGTCTTGGTCGGGATTTCATCT GAAATTGTCCGGGACCATACGTAAGAGACCTATGTACATCTAATTAGGAC GCGACACTTTTGAAAGAGCGACTACGACTACTACTAGTCTACTTCGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGGGCGT GGAGTGCGCATGTCGACGCACGTTGGTGCTGTTTTTTTTAGCGAGACGAG TATCAGCATCAAGTGGCGACCATCTTTGAGGTTTTTTGCTGGGAGTGCAA ATCAACGGTCGTGAACCCGCTGATGCCAATACTGTTTCTTTGTTGGCTTT GTTGTGTGGTTCGGGGAAGGCTTGATCGAAGGACCATTCATTCAATCCGT ATGCCTGAACTTGGTGGATACGTATGATGTTTGTGTTATCTCGACACCTC CATTGCATGTTTTTGACCGGGCATGCTACGGGTACGCGTTTGCTTACTTA CAGCTGTGTCTCCCTCGGTAGTCCATCTCCCACCAAATATGTTTTTTTCC CGTTGTGTTCGGATTGGCCGCCTTGGTTGTTTCACGGTTTCCCTTCCCCC CTCCCCCTCCTCGGATTTGTCTCCCTTTGGCATGGCTCTCCTGGGGTGTG CTGCGATGACAGTGCCACACGGACGTCTACACCCTCTCCGGACAGGTGAC TTATCTTCTATCTTCCCATCGTCTTTGAGCTTGGTCGATTGTTGCCCGCT TGAGCGCAGACCCTTTGGCGCAGGCATAAGCTCGTCGGTTTCGTGTGTGT GTTTGTGTGTGTGTGTGTGTGTGTTTTGCAAGTGTCGCCGATGTTAGTCC TTCTCGCGAGAGGGAAACATCGGTAGGCACGTCTCGCAGTTTCTCCCTTG CTTTCGTTGCAGGGGTGTATTTTCAAGACTGTCTGTTGCCGCGCCCAACC TCAGAAGAGAGCCACGTCCAGGGTTACGACTGATGACTACGCCACTGCCA CCGCGGTTGTAGACCGACCGATAGTCTTTGTGGTCGCGTTTTCTTCGAAG AGGCAGAACCCCGATGTGTGAACTTGTACGCTGGATGCCGGCGAGTTTTC GTGCAGAGATGGCCTCTACAGGAAGAAGAGGGTCACGTCTCTTCCCCGAC TTATGTGTCCGAGGACGACATCGCCCGCCGTCCCGATTTCTTTGTGTACG CTTGGCTTGTGTATCCTAGTCCACCCCTTCAAGCTTTGTCGCTTTCGTCT TTCGCCCGTACGTGCTTGGCGTTTTTTTTCCCGTCTTTTCCTTACAGGAC GCTGAGGGCATGTTCCCCTCCATCCTCGGACACGAGGCGGGCTGCATCGT GGAGTCCGTCGGAGAAGGGGTCACGTCGGTCAAGCCTGGGGACAAGGTAA GGTATGCCTTCGTAGTGTGCCTCCACGGTGCCCCCCCCCCCCCCCCCCCC CCGCGAACCGCTGCGTGCTAGGTNNNNNNNNNNGGTAAGTGTGCTCGTGC TGCTTGGCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCAGACCAATAGA TTGTTACAAGATGGTGTTTTCTGTAGCATCATATCTTACCCGTACGTGCT ACTGTAGTAAATGGTTTTGAAACCATCCCGGCTCGTGGGGAACGGGGAAA CGCCTCGATTTTTCTATCTTGCTGTGAAAACGAGGGCACTTTCTTCGGAG GAGCGGAGTAATTCGAAGCCCTGGAGAGATGGGATTTGGTGTTTTCGACC TTCGATCGAAATCTGCTTCTACTATCCCCCCCCCCCCTCTTTCTCGCGCG CGAGTGCGCGGACCGTTGCACCTATGTATGTCGGATAAGCTGGCTCCGCA TCCCCGCGATATTGTTTTTTATTGCTTGGAACAAAACATAGGCCCCGGTA CCCGCGACGCTACCTGTGTGGACAGTACGTGGATTCATCCCCCGAAGTGG CATAGTTGGTGGTTATTTGGTGGGGGCGTTTGTTCCTCTTGTCATATTGG CACTACAATATACTACTGTTTTTTTTGCTTTCAGCATTTATTGGGTGCTC GTCGCCTAGTGCCTCTGTTCCCGGCGCTTCATCCGCGTGTATTTTCCCAG TTGTTGCTCACTCCTGCTTCGCTGCCCAACAAAAATAACGTGGATGTTGC ACACCAATATCAAAAATCTTTGCCAGGTAATCCCCTGCTACACGCCGGAG TGCAAGCAGGCCGAGTGCATCTTCTGCCAGAGCACCAAGACGAACCTCTG TCCCACCATCCGGGCGACGCAGGGGAAGGGCGTGATGCCCGACGGGACCA CTCGCTTCTCCATCGACGGCAAGCCCATCTACCACTTCATGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10310:670..6863+

>mRNA_Ecto-sp8_S_contig10310.510.1 ID=mRNA_Ecto-sp8_S_contig10310.510.1|Name=mRNA_Ecto-sp8_S_contig10310.510.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10310:670..6863+ (Ectocarpus species8 EcLAC_412)
ATGGGGCGCAACTACCCGCCCGCAGATGAGTTCATGTTCTCGCCCGCGTC
ATTGCTGCCGTGGGCCCTATCCCTCTTCGCCTTCGTTACCTCGCCCTGCT
ACGGCCTTCGTCCTCGGTACCTGCCCCCGCTCCCTGCATCCCCAGGCACG
CCCACTCAGCCCATGTCCGAAACGATGGGAAAACCGATCAAATGCAAGGC
GGCGGTGGCTTGGGCCGCGAACGAGCCTCTGAAGGTGGAAGAGATCGAGG
TGGCCCCTCCTCAGAAGGGCGAGGTCCGCGTCAAGGTTATCGCCAATGCC
CTGTGCCACACGGACGTCTACACCCTCTCCGGACAGGACGCTGAGGGCAT
GTTCCCCTCCATCCTCGGACACGAGGCGGGCTGCATCGTGGAGTCCGTCG
GAGAAGGGGTCACGTCGGTCAAGCCTGGGGACAAGGTAATCCCCTGCTAC
ACGCCGGAGTGCAAGCAGGCCGAGTGCATCTTCTGCCAGAGCACCAAGAC
GAACCTCTGTCCCACCATCCGGGCGACGCAGGGGAAGGGCGTGATGCCCG
ACGGGACCACTCGCTTCTCCATCGACGGCAAGCCCATCTACCACTTCATG
TGA
back to top