mRNA_Ecto-sp8_S_contig10309.509.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10309.509.1
Unique NamemRNA_Ecto-sp8_S_contig10309.509.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: D8LRR6_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR6_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 3.560e-38
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVIPI 213
            TLLNLVLLEPKSTSIML+RYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVIPI
Sbjct:  183 TLLNLVLLEPKSTSIMLERYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVIPI 253          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: B8BU99_THAPS (DUF4149 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU99_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 1.420e-17
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELAS 201
            TLLNL+ LEP ST +M  RY LEDD K+DSDEY +L K+FG +HGMSS ANL ALIG  V+   LAS
Sbjct:   82 TLLNLLYLEPTSTQVMFDRYDLEDDGKRDSDEYGKLAKSFGAYHGMSSLANLVALIGGIVHGVRLAS 148          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A7S3RBJ6_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RBJ6_9SPIT)

HSP 1 Score: 75.5 bits (184), Expect = 3.110e-15
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWEL 195
            TLLNL  LEP+ST +M  RY LE++ K++SDEYK   K FG  HGMSS ANLGALIG   ++W L
Sbjct:  124 TLLNLFYLEPQSTKVMFTRYDLENEGKQESDEYKVAAKKFGPLHGMSSLANLGALIGVIAHSWWL 188          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A7S0FP75_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FP75_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.690e-14
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLEDDKK-KDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVI 207
            TL+NL  LEP ST +M  RY+LE+ +  KDSDEY++L  +FGKFHGMSS  NL AL G+  +A+ LAS +
Sbjct:   35 TLINLFYLEPTSTKVMFDRYELEEKEGGKDSDEYRKLAASFGKFHGMSSLTNLVALCGAVAHAFFLASAL 104          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A7S2ULJ3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULJ3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-12
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLED-DKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELASVI 207
            TLLNL +LEPKST +M KRY+LED    KDS+ YKEL  TFGK HGMSS +NL  L  +  + + +AS +
Sbjct:  196 TLLNLFVLEPKSTKVMFKRYELEDMPGGKDSEGYKELASTFGKLHGMSSLSNLIGLCAAVAHGFYIASAL 265          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A7S3L6U9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6U9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.450e-12
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLED-DKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELA 198
            TL+N  LLEP STS M++RY+LED D  KD+DEYK L  +FGKFHGMSS  NL AL G   +A  LA
Sbjct:  185 TLVNQFLLEPMSTSNMMRRYELEDQDGGKDTDEYKTLKASFGKFHGMSSLTNLIALCGGVAHAVYLA 251          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A7S1D7W6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7W6_CYCTE)

HSP 1 Score: 66.6 bits (161), Expect = 2.160e-11
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLE---DDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELAS 201
            TLLN + LEP ST++M  RY++E   D + K+S EYK+L   FGK+HGMSS ANL AL  +FV+ + +AS
Sbjct:  204 TLLNQLWLEPTSTTVMFSRYEIENSDDPQAKESAEYKKLASDFGKYHGMSSLANLVALCAAFVHGFYIAS 273          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A813DI93_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DI93_POLGL)

HSP 1 Score: 52.4 bits (124), Expect = 3.190e-6
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELAS 201
            TL N++ LEP++TS+M +RY+ E+    + +  K+L   FGK HGMSS ANL AL+G   +   LA+
Sbjct:  190 TLANMLYLEPQATSVMEQRYERENQGLTNPEVDKDLKAKFGKLHGMSSLANLVALVGLVAHGSVLAA 256          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A813DTM6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DTM6_POLGL)

HSP 1 Score: 52.4 bits (124), Expect = 3.770e-6
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALIGSFVYAWELAS 201
            TL N++ LEP++TS+M +RY+ E+    + +  K+L   FGK HGMSS ANL AL+G   +   LA+
Sbjct:  277 TLANMLYLEPQATSVMEQRYERENQGLTNPEVDKDLKAKFGKLHGMSSLANLVALVGLVAHGSVLAA 343          
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Match: A0A7S2C2Q3_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2C2Q3_9DINO)

HSP 1 Score: 51.2 bits (121), Expect = 4.200e-6
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 TLLNLVLLEPKSTSIMLKRYKLEDDKKKDSDEYKELGKTFGKFHGMSSFANLGALI 168
            TL+NL+ LEP++T +M +RY+ E    KD    K+L   FGK HGMSS ANL AL+
Sbjct:  103 TLMNLLYLEPEATRVMFERYEREKQGLKDPAIDKQLRADFGKLHGMSSLANLLALV 158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10309.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LRR6_ECTSI3.560e-3898.59DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
B8BU99_THAPS1.420e-1764.18DUF4149 domain-containing protein (Fragment) n=1 T... [more]
A0A7S3RBJ6_9SPIT3.110e-1560.00Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S0FP75_9STRA2.690e-1455.71Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2ULJ3_9STRA1.420e-1255.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3L6U9_9STRA3.450e-1261.19Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1D7W6_CYCTE2.160e-1152.86Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A813DI93_POLGL3.190e-644.78Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813DTM6_POLGL3.770e-644.78Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2C2Q3_9DINO4.200e-651.79Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10309contigEcto-sp8_S_contig10309:5841..6897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score136.7
Seed ortholog evalue4.2e-30
Seed eggNOG ortholog2880.D8LRR6
Preferred nameTMEM205
Model size216
KEGG koko:K07884
KEGG Pathwayko04972,map04972
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Domain of unknown function (DUF4149)
EggNOG OGsKOG2886@1,KOG2886@2759
Cds size216
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.9327686-CDS-Ecto-sp8_S_contig10309:5840..60001681143129.9327686-CDS-Ecto-sp8_S_contig10309:5840..6000Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10309 5841..6000 -
1681143129.9496732-CDS-Ecto-sp8_S_contig10309:6841..68971681143129.9496732-CDS-Ecto-sp8_S_contig10309:6841..6897Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10309 6842..6897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10309.509.1prot_Ecto-sp8_S_contig10309.509.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10309 5841..6897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10309.509.1

>prot_Ecto-sp8_S_contig10309.509.1 ID=prot_Ecto-sp8_S_contig10309.509.1|Name=mRNA_Ecto-sp8_S_contig10309.509.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=72bp
TLLNLVLLEPKSTSIMLKRYKLEDDKKKDSDEYKELGKTFGKFHGMSSFA
NLGALIGSFVYAWELASVIPI*
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mRNA from alignment at Ecto-sp8_S_contig10309:5841..6897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10309.509.1 ID=mRNA_Ecto-sp8_S_contig10309.509.1|Name=mRNA_Ecto-sp8_S_contig10309.509.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1057bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10309:5841..6897- (Ectocarpus species8 EcLAC_412)
ACCCTGCTGAATCTGGTACTGCTTGAGCCCAAGTCCACAAGCATCATGCT GAAACGGTGAGCTTCTTTGCCAGCAGGAAGTATCGCGAGTTTCAATCCCG AGAGCGTTGGAATAGCCAGGATACCACTAAGCATGAAACGCGATGTACCA ACATTTGCTTGACGGCGTGAGGCTTCCTCGCCCGCCAGCGCTGCGACTAT GAAAAACTAAGAATTTGCTGTGTTCAAAATCGAGGTATTCTTGTCTTGAC CGGGACGACAGCAGCAGTTTTTCCCACTATGCCTTTTGTTTTTCATCCCG CTGCGCCCATGGGGCCACCGCTTTCGCCATCATTGCGCTCCTAACGGAGG CGGCGGGCGAGCACGAGAAGTGACGGTGATGTCTCAATCATGGTCTTACA CTTTTTCTTGACCCACGAACAATCGACGTGAGCGCTGAGAAACAGAACAC CAGCAGAAGAAATAGCGGTACCAGCACACCTCATGAAGAAAGCTTGAAAG CACGCTGATGTCGGAATTCGAGTTCGCGTCGCCGCTTCTTGGCGTACGCA TCGACAGCTCTGCCGACTTGGCATGCTGCAGACGATAGATGAGCAGTCTT GATCAGTTTGGCTTCAATTTAGACTACCGGCACAGCAGCCGAGTTATGGA ATCTCTTCGGAGAAAACAATACCCAGGTGGTCGAAGTTTGAATGGAAAAA AGAACGGTTACGTTTTCCGACGACGTGCTGCAACACAGGTAGTCATCTCC GTGAGAGTCCCGTGTCCAATCCCAGGTGGCTCTTTTTTTTTGTGGCATCC GACCACACATCCGTAAGGTGTTTGGTAAGAGCCTCGTCAAAGCAAGCGTG TTCTGAAAACAACCCTCGATAATGGCTCCTGATGTGCTCTGATGCAGATA CAAACTGGAGGACGACAAGAAGAAAGACTCCGACGAGTACAAGGAGCTCG GAAAGACGTTCGGGAAATTCCATGGCATGTCAAGCTTTGCGAACCTCGGA GCGCTCATTGGGAGTTTTGTGTACGCGTGGGAGCTGGCTTCAGTAATCCC TATATGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10309:5841..6897-

>mRNA_Ecto-sp8_S_contig10309.509.1 ID=mRNA_Ecto-sp8_S_contig10309.509.1|Name=mRNA_Ecto-sp8_S_contig10309.509.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10309:5841..6897- (Ectocarpus species8 EcLAC_412)
ACCCTGCTGAATCTGGTACTGCTTGAGCCCAAGTCCACAAGCATCATGCT
GAAACGATACAAACTGGAGGACGACAAGAAGAAAGACTCCGACGAGTACA
AGGAGCTCGGAAAGACGTTCGGGAAATTCCATGGCATGTCAAGCTTTGCG
AACCTCGGAGCGCTCATTGGGAGTTTTGTGTACGCGTGGGAGCTGGCTTC
AGTAATCCCTATATGA
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