mRNA_Ecto-sp8_S_contig10308.506.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10308.506.1
Unique NamemRNA_Ecto-sp8_S_contig10308.506.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: D7G6J8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J8_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.890e-23
Identity = 78/183 (42.62%), Postives = 105/183 (57.38%), Query Frame = 1
Query:   79 VLEDTYGGRSHMPALHSAAQHGHARFAAALIAAGAPVEHR-HYSDTALNVAVREGHEE---VVRELLSAVADIN-------TENSYVYSLLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLRHNASV 594
            V E    G S +P L  AA  G     AALI AGAP+E +       L  AV    +E   +VR+LL+  AD+N       T+  +  S L +A   N E MMD+LLAAG D+G +  D L     PLHAAA    C  L++L+  GA+V+ +DS+GR+ALH+AC HN E AV++LL++NA V
Sbjct:  206 VQEVDDAGYSSLPILSIAAFLGGRSMVAALIKAGAPLEFQSRRGRPPLATAVASDRDEALGIVRDLLAVGADVNNVGHNDQTKGPFGNSPLCLAAAKNKEGMMDLLLAAGADLGNERVDIL-----PLHAAAHHHSCGALQRLISAGASVHQLDSRGRSALHVACLHNCEGAVKLLLQYNARV 383          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: D7G6J7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J7_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 7.830e-15
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  166 LIAAGAPVEHR-HYSDTALNVAVR-EGHEEVVRELLSAVADINTENSYVYSLLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLRHN 585
            LI  G P+E R    +  L  AV  +G   + R+LL A AD+N  N+         V    E MMD+L AAG D+G++          PLHAAA    C  +++L+  GA+V+ ++S GR+ALH+AC H  E AV++LLR+N
Sbjct:   49 LIKVGVPLECRPRLGNPPLATAVASDGALGIARDLLDAGADVNKSNA------GYGVLPYMEDMMDLLPAAGADLGKE-----RAATSPLHAAAQCDCCGAIQRLISAGASVHQLNSGGRSALHMACLHKCEGAVKLLLRYN 179          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: D7FVJ3_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.210e-15
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  394 GTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLRHNAS 591
            G D+   P  PLH AA KGFCRPLE+LL  GA V+ VD  GR+ALH+AC +N E AVEVLLRH+AS
Sbjct:  164 GKDREECP--PLHVAAKKGFCRPLERLLLAGAKVDCVDRVGRSALHVACFYNREGAVEVLLRHHAS 227          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: A0A8C8JN16_ONCTS (Ankyrin repeat domain 16 n=2 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8JN16_ONCTS)

HSP 1 Score: 67.0 bits (162), Expect = 1.200e-9
Identity = 58/196 (29.59%), Postives = 89/196 (45.41%), Query Frame = 1
Query:    4 WISLEVVASAGNPQVFHRLLDASPSVLEDTYGGRSHMPALHSAAQHGHARFAAALI--AAGAPVEHRHYSDTALNVAVREGHEEVVRELLSAVADINTENSYV--YSLLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLR 579
            W S  +    G+P V   LL A+P V       ++    LH+AA HG     + L+      P        T    AVR GH  V + LL       T    +   S+ ++AV    E +  ++   G D+ +  TD   +    LH AA +G    ++ LL +GA+++    KGRTALH+AC+  H +AV  +L+
Sbjct:  144 WNSFHIACRKGDPAVIQHLLLANPEVWRTE--SKTLRTPLHTAAMHGCEEVVSILVQRCGYVPDVRDSCGVTPFMDAVRNGHISVAKLLLEKHQASPTAADILGAQSVHHVAVTAQEEALEFLVRDLGVDVNQTATD---MQLTSLHYAAKEGHTGTIKALLTLGADLHVRHKKGRTALHVACTGQHAEAVRTILQ 334          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: A0A8J6KED6_ELECQ (Uncharacterized protein n=3 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6KED6_ELECQ)

HSP 1 Score: 63.5 bits (153), Expect = 1.910e-8
Identity = 60/202 (29.70%), Postives = 89/202 (44.06%), Query Frame = 1
Query:    4 WISLEVVASAGNPQVFHRLLDASPSVLEDTYGGRSHMPALHSAAQHGHARFAAALIAAGAPVEHRHYSD--------TALNVAVREGHEEVVRELLSA--VADINTENSYVYSLLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLR 579
            W S  +    G+P V   LLDA P +   T       P LH+AA HG       L+      E  +Y          T    AV+ GH ++   L+    V     +     +L   AV   ++ +  ++   G D+    T   ++   P+H AA +G    L  LL +GA++N  DSKGR+ALH+ACS  H   V+ LL+
Sbjct:  143 WNSFHIACREGDPAVISYLLDAFPDIWM-TESNIKRTP-LHTAAMHGCHDVVQILL------ERCNYEADCKDSCGVTPFMDAVQNGHLQIAELLIEKKKVCCRAVDRMGAQALHRAAVTGQDKALQYLVSHLGVDVNGKAT---SMQLSPVHYAAKEGHVGSLSTLLSLGADLNSRDSKGRSALHMACSGQHAGCVDFLLK 333          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: UPI001131D8F2 (ankyrin repeat domain-containing protein 16-like n=1 Tax=Salmo trutta TaxID=8032 RepID=UPI001131D8F2)

HSP 1 Score: 61.2 bits (147), Expect = 6.570e-8
Identity = 57/196 (29.08%), Postives = 87/196 (44.39%), Query Frame = 1
Query:    4 WISLEVVASAGNPQVFHRLLDASPSVLEDTYGGRSHMPALHSAAQHGHARFAAALI--AAGAPVEHRHYSDTALNVAVREGHEEVVRELLSAVADINTENSYVYS--LLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLR 579
            W S  +    G+P V   LL A+  V   T   +   P LH+AA HG     + L+      P        T     VR GH  V + LL       T    + +  + ++ V    E +  ++   G DM +  TD   +    LH AA +G    ++ LL +G +++  D KG+TALH+AC+  H +AV  LL+
Sbjct:   23 WNSFHISCRKGDPAVIQHLLLANLEVWR-TESKKRRTP-LHTAAMHGCEEVVSILVQRCGYVPDGRDSCGVTPFMDTVRNGHISVAKLLLEKHQASPTAADILGAQPVHHVVVTAQEEALEFLVRDLGVDMNQTATD---MQLTSLHYAAKEGHTGTIKALLTLGTDLHVRDKKGKTALHMACTGQHAEAVRTLLQ 213          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: A0A7S4H8T1_GUITH (Hypothetical protein n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4H8T1_GUITH)

HSP 1 Score: 62.4 bits (150), Expect = 7.070e-8
Identity = 57/156 (36.54%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  121 LHSAAQHGHARFAAALIAAGAPVEHRHYS-DTALNVAVREGHEEVVRELLSAVADINTENSYVYSLLNIAVCTNNERMMDVLL-AAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLRH 582
            L S A HG       LI+ G  V   +Y   TAL++A  EGHE+VV+ LLS  AD+N  +    + L  A+   +  + D+L  A G+ +G D   +L         AA KG    L  L+R  AN +  D+  RTALHLA S+     ++ LLRH
Sbjct: 2598 LCSHAFHGKLADIERLISNGINVNESNYDLRTALHLAACEGHEDVVKYLLSKSADVNCRDRLGRTPLCDALVHCHTNIQDMLREAGGQLLGMDIAVELC-------TAAAKGDVSQLRALIRNSANPDAADADRRTALHLAASNGETTVLDYLLRH 2746          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: UPI0018CE8E5F (L-asparaginase-like isoform X1 n=4 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CE8E5F)

HSP 1 Score: 62.0 bits (149), Expect = 7.990e-8
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  211 TALNVAVREGHEEVVRELLSAVADINTENSYVYSLLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLL 576
            TAL++A   G+ E+V  LL     ++  + Y  + L+ A+ T+N  ++ +L+  G  +    T       + L AAA +G  + L+     GA++   D  GRTALHLA  H HED V  LL
Sbjct:  467 TALHLACHNGNAEIVNYLLLNGVSVHIRDRYDRTPLHEAITTDNHEIIQLLINCGAHL----TGSSRGIGEKLCAAAARGSMKRLKSYQLAGADLTQPDPSGRTALHLAALHGHEDIVRFLL 584          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: A0A673VTM4_SALTR (Ankyrin repeat domain-containing protein 16-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673VTM4_SALTR)

HSP 1 Score: 61.2 bits (147), Expect = 1.060e-7
Identity = 57/196 (29.08%), Postives = 87/196 (44.39%), Query Frame = 1
Query:    4 WISLEVVASAGNPQVFHRLLDASPSVLEDTYGGRSHMPALHSAAQHGHARFAAALI--AAGAPVEHRHYSDTALNVAVREGHEEVVRELLSAVADINTENSYVYS--LLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLR 579
            W S  +    G+P V   LL A+  V   T   +   P LH+AA HG     + L+      P        T     VR GH  V + LL       T    + +  + ++ V    E +  ++   G DM +  TD   +    LH AA +G    ++ LL +G +++  D KG+TALH+AC+  H +AV  LL+
Sbjct:  101 WNSFHISCRKGDPAVIQHLLLANLEVWR-TESKKRRTP-LHTAAMHGCEEVVSILVQRCGYVPDGRDSCGVTPFMDTVRNGHISVAKLLLEKHQASPTAADILGAQPVHHVVVTAQEEALEFLVRDLGVDMNQTATD---MQLTSLHYAAKEGHTGTIKALLTLGTDLHVRDKKGKTALHMACTGQHAEAVRTLLQ 291          
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Match: A0A7S0E7J3_9CRYP (Hypothetical protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E7J3_9CRYP)

HSP 1 Score: 61.2 bits (147), Expect = 1.750e-7
Identity = 58/165 (35.15%), Postives = 81/165 (49.09%), Query Frame = 1
Query:   94 YGGRSHMPALHSAAQHGHARFAAALIAAGAPVEHRHYS-DTALNVAVREGHEEVVRELLSAVADINTENSYVYSLLNIAVCTNNERMMDVLL-AAGEDMGEDGTDKLNLPRQPLHAAAMKGFCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLRH 582
            + GR     L + A HG       LI+ G  V   +Y   TAL++A  EGHEEVV+ LL+  AD+N  +    + L  A+   +  + D+L  A G+ +G D   +L         AA KG    L  L+R  AN +  D   RTALHLA S+     ++ LLRH
Sbjct: 2326 FPGRDAGVLLCNHAFHGKLEDIERLISNGINVNEANYDLRTALHLAACEGHEEVVKYLLTKSADVNCRDRLGRTPLCDALVHCHTNIQDILREAGGQLLGMDIAVELC-------TAAAKGDVAQLRALIRNRANPDAADGDRRTALHLASSNGETRVLDYLLRH 2483          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10308.506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6J8_ECTSI1.890e-2342.62Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G6J7_ECTSI7.830e-1539.44Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FVJ3_ECTSI8.210e-1563.64Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A8C8JN16_ONCTS1.200e-929.59Ankyrin repeat domain 16 n=2 Tax=Oncorhynchus tsha... [more]
A0A8J6KED6_ELECQ1.910e-829.70Uncharacterized protein n=3 Tax=Eleutherodactylus ... [more]
UPI001131D8F26.570e-829.08ankyrin repeat domain-containing protein 16-like n... [more]
A0A7S4H8T1_GUITH7.070e-836.54Hypothetical protein n=3 Tax=Guillardia theta TaxI... [more]
UPI0018CE8E5F7.990e-833.61L-asparaginase-like isoform X1 n=4 Tax=Teleopsis d... [more]
A0A673VTM4_SALTR1.060e-729.08Ankyrin repeat domain-containing protein 16-like n... [more]
A0A7S0E7J3_9CRYP1.750e-735.15Hypothetical protein n=2 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10308contigEcto-sp8_S_contig10308:4062..5078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score107.5
Seed ortholog evalue7.5e-21
Seed eggNOG ortholog2880.D7G6J8
Model size594
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size594
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.7483034-CDS-Ecto-sp8_S_contig10308:4061..45691681143129.7483034-CDS-Ecto-sp8_S_contig10308:4061..4569Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10308 4062..4569 -
1681143129.7595272-CDS-Ecto-sp8_S_contig10308:4992..50781681143129.7595272-CDS-Ecto-sp8_S_contig10308:4992..5078Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10308 4993..5078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10308.506.1prot_Ecto-sp8_S_contig10308.506.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10308 4062..5078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10308.506.1

>prot_Ecto-sp8_S_contig10308.506.1 ID=prot_Ecto-sp8_S_contig10308.506.1|Name=mRNA_Ecto-sp8_S_contig10308.506.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=198bp
MWISLEVVASAGNPQVFHRLLDASPSVLEDTYGGRSHMPALHSAAQHGHA
RFAAALIAAGAPVEHRHYSDTALNVAVREGHEEVVRELLSAVADINTENS
YVYSLLNIAVCTNNERMMDVLLAAGEDMGEDGTDKLNLPRQPLHAAAMKG
FCRPLEKLLRVGANVNWVDSKGRTALHLACSHNHEDAVEVLLRHNASV
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mRNA from alignment at Ecto-sp8_S_contig10308:4062..5078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10308.506.1 ID=mRNA_Ecto-sp8_S_contig10308.506.1|Name=mRNA_Ecto-sp8_S_contig10308.506.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1017bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10308:4062..5078- (Ectocarpus species8 EcLAC_412)
ATGTGGATCTCGTTGGAAGTTGTCGCGTCTGCTGGTAACCCACAAGTGTT TCACAGGCTATTGGATGCCAGTCCAAGCGTTTTGGAGTTTTGCTCTGTGG ACATTCCGGCGACAGCTATCATTGTCTGTAAATTTGAGGACCACCCCACC CAATGTCAATGTAGGTACAGGTTACAACGCCTCTTGTGTTGTGCTGCAAA CGGAGGAAGTATGGATATATTTTCGTCTCTGGTTGGTATTGATGGTTTCC TAAAGCTGGCGCAGCGAAACTCCGTGGATCTCCTCGCCGCAGCCGCAGCT GGTGGAAACGTTGACATATTTTCCTTTCTGGTTGGGATTGATGGTTTCCT GAGGTCAGCGCGAACTCCCGGATACGGCGAGGATTGGCGGAGGTACCAGG ACCGGCGTCTCCTGGCCGCCGCCGCAGCTGGAGGAAACGTTGCCATTCTG TCGGCTCTGTTTGACATTGACGACGGTCTTCTTGCTCTGGTGCGAAACGA CCTCACGAGAGACACATATGGAGGACGTTCACATATGCCCGCTCTACATA GCGCGGCCCAACATGGACACGCGAGGTTTGCTGCAGCACTCATTGCAGCT GGAGCCCCAGTAGAGCACAGGCATTATTCGGATACCGCGCTCAACGTCGC AGTTCGCGAGGGTCACGAGGAAGTCGTGCGCGAGCTCCTGTCTGCTGTAG CCGACATCAACACCGAGAACTCCTACGTGTACTCTCTGCTAAATATCGCT GTTTGCACCAACAACGAGCGAATGATGGACGTTTTGCTTGCTGCCGGGGA AGACATGGGTGAGGATGGGACCGACAAGCTAAATCTACCGCGTCAACCGC TTCATGCAGCCGCGATGAAAGGCTTCTGCAGGCCATTGGAGAAGCTTCTC CGAGTCGGAGCCAACGTCAACTGGGTCGACTCAAAAGGTCGGACGGCGCT GCATTTGGCTTGTTCCCACAATCACGAGGATGCCGTCGAGGTGCTACTGC GGCACAACGCCAGTGTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10308:4062..5078-

>mRNA_Ecto-sp8_S_contig10308.506.1 ID=mRNA_Ecto-sp8_S_contig10308.506.1|Name=mRNA_Ecto-sp8_S_contig10308.506.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10308:4062..5078- (Ectocarpus species8 EcLAC_412)
ATGTGGATCTCGTTGGAAGTTGTCGCGTCTGCTGGTAACCCACAAGTGTT
TCACAGGCTATTGGATGCCAGTCCAAGCGTTTTGGAAGACACATATGGAG
GACGTTCACATATGCCCGCTCTACATAGCGCGGCCCAACATGGACACGCG
AGGTTTGCTGCAGCACTCATTGCAGCTGGAGCCCCAGTAGAGCACAGGCA
TTATTCGGATACCGCGCTCAACGTCGCAGTTCGCGAGGGTCACGAGGAAG
TCGTGCGCGAGCTCCTGTCTGCTGTAGCCGACATCAACACCGAGAACTCC
TACGTGTACTCTCTGCTAAATATCGCTGTTTGCACCAACAACGAGCGAAT
GATGGACGTTTTGCTTGCTGCCGGGGAAGACATGGGTGAGGATGGGACCG
ACAAGCTAAATCTACCGCGTCAACCGCTTCATGCAGCCGCGATGAAAGGC
TTCTGCAGGCCATTGGAGAAGCTTCTCCGAGTCGGAGCCAACGTCAACTG
GGTCGACTCAAAAGGTCGGACGGCGCTGCATTTGGCTTGTTCCCACAATC
ACGAGGATGCCGTCGAGGTGCTACTGCGGCACAACGCCAGTGTT
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