mRNA_Ecto-sp8_S_contig103060.504.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103060.504.1
Unique NamemRNA_Ecto-sp8_S_contig103060.504.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: D8LTB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB4_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.150e-34
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1
Query:    7 DAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            DAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMK+
Sbjct:   74 DAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKI 133          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A835YH28_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH28_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.830e-24
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    4 TDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            TDAAN QHYEV+AAFY + LGPRLKYSSG WP+ D+TF ESE AMLE YC+RA+L DGM++
Sbjct:   73 TDAANAQHYEVSAAFYKIVLGPRLKYSSGLWPRPDTTFAESETAMLECYCERAQLADGMRI 133          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A7S1CZY2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZY2_CYCTE)

HSP 1 Score: 100 bits (248), Expect = 4.840e-24
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 NTDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            +TDAANEQHYEV A FY L+LGPR KYSSG WP+ D+TFE+SE+AML++YC RA ++DGM +
Sbjct:   15 DTDAANEQHYEVPAKFYDLSLGPRKKYSSGLWPEPDTTFEQSEIAMLDLYCQRANVQDGMNI 76          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A7S4N4U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N4U2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.840e-24
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 NTDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            NTD ANEQHYEV AAFY + LGPR KYSSG W   ++TFEESEVAMLE+YC+RA ++DGMK+
Sbjct:  123 NTDEANEQHYEVPAAFYDMCLGPRKKYSSGLWADKNTTFEESEVAMLELYCERAGVKDGMKI 184          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A6U3YXE6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3YXE6_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.830e-22
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1
Query:    4 TDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            TDAANEQHYEV AAFY L LGPR KYSSG WP S++TFEESE AML  YC+RA+++DGM +
Sbjct:  125 TDAANEQHYEVPAAFYELCLGPRKKYSSGLWPFSNTTFEESEDAMLAKYCERAQVKDGMNI 185          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A7S3DNC6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNC6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.540e-22
Identity = 44/61 (72.13%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    4 TDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            TD ANEQHYEV A FY L LGPR KYSSG WP  D+TFEESEVAMLE YC  A +EDGM +
Sbjct:  116 TDEANEQHYEVPAKFYDLCLGPRKKYSSGLWPNKDTTFEESEVAMLEHYCQLAGVEDGMSI 176          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A1Z5K7V8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7V8_FISSO)

HSP 1 Score: 96.3 bits (238), Expect = 4.610e-22
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 TDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            T AANEQHYEV AAFY L LGP  KYSSG+WP   +TFEESE+ MLE+YC RA+L+DGMK+
Sbjct:  115 TTAANEQHYEVPAAFYDLCLGPCKKYSSGYWPTPQTTFEESELHMLELYCQRAELQDGMKI 175          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A7S1G3N7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G3N7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.360e-21
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 TDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            T  ANEQHYEV AAFY L+LGPR KYSSG W    +TFEESE AML++YC+RA+LEDGM++
Sbjct:  132 TREANEQHYEVPAAFYDLSLGPRKKYSSGLWTSPSTTFEESEAAMLDLYCERAELEDGMRI 192          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A7S0GLR5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLR5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.570e-21
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1
Query:    4 TDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            T  ANEQHYEV AAFY L+LGPR KYSSG WPK ++TFEESEVAML+ Y +R+ +EDGM +
Sbjct:  131 TSEANEQHYEVPAAFYDLSLGPRKKYSSGLWPKRNTTFEESEVAMLDCYMERSGIEDGMSI 191          
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Match: A0A7S2XKQ3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKQ3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.690e-21
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:    7 DAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMYCDRAKLEDGMKV 186
            D AN QHYEV AAFY L+LGPR KYSSG WP   +TFEESEV ML++YCDRA LEDGM +
Sbjct:  136 DLANAQHYEVPAAFYDLSLGPRKKYSSGLWPYPKTTFEESEVYMLDLYCDRACLEDGMHI 195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103060.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTB4_ECTSI1.150e-3498.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YH28_9STRA2.830e-2472.13S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S1CZY2_CYCTE4.840e-2467.74Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4N4U2_9STRA5.840e-2470.97Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A6U3YXE6_9STRA1.830e-2272.13Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3DNC6_9STRA4.540e-2272.13Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5K7V8_FISSO4.610e-2270.49Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1G3N7_9STRA1.360e-2168.85Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0GLR5_9STRA3.570e-2168.85Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2XKQ3_9STRA3.690e-2171.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103060contigEcto-sp8_S_contig103060:30..215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score128.6
Seed ortholog evalue9.8e-28
Seed eggNOG ortholog2880.D8LTB4
Model size186
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Mycolic acid cyclopropane synthetase
EggNOG OGs2QQW3@2759,COG2230@1
Cds size186
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.659383-CDS-Ecto-sp8_S_contig103060:29..2151681143129.659383-CDS-Ecto-sp8_S_contig103060:29..215Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103060 30..215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103060.504.1prot_Ecto-sp8_S_contig103060.504.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103060 30..215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103060.504.1

>prot_Ecto-sp8_S_contig103060.504.1 ID=prot_Ecto-sp8_S_contig103060.504.1|Name=mRNA_Ecto-sp8_S_contig103060.504.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=62bp
NTDAANEQHYEVNAAFYHLALGPRLKYSSGFWPKSDSTFEESEVAMLEMY
CDRAKLEDGMKV
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mRNA from alignment at Ecto-sp8_S_contig103060:30..215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103060.504.1 ID=mRNA_Ecto-sp8_S_contig103060.504.1|Name=mRNA_Ecto-sp8_S_contig103060.504.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103060:30..215+ (Ectocarpus species8 EcLAC_412)
AATACAGACGCGGCAAACGAACAGCACTACGAAGTGAACGCGGCCTTCTA CCACCTCGCGCTCGGGCCGCGCCTCAAGTACTCCTCGGGCTTCTGGCCCA AGAGCGACAGCACCTTCGAGGAATCCGAAGTGGCGATGCTCGAGATGTAC TGCGACAGGGCGAAGCTCGAGGACGGCATGAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103060:30..215+

>mRNA_Ecto-sp8_S_contig103060.504.1 ID=mRNA_Ecto-sp8_S_contig103060.504.1|Name=mRNA_Ecto-sp8_S_contig103060.504.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103060:30..215+ (Ectocarpus species8 EcLAC_412)
AATACAGACGCGGCAAACGAACAGCACTACGAAGTGAACGCGGCCTTCTA
CCACCTCGCGCTCGGGCCGCGCCTCAAGTACTCCTCGGGCTTCTGGCCCA
AGAGCGACAGCACCTTCGAGGAATCCGAAGTGGCGATGCTCGAGATGTAC
TGCGACAGGGCGAAGCTCGAGGACGGCATGAAGGTG
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