mRNA_Ecto-sp8_S_contig10306.503.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10306.503.1
Unique NamemRNA_Ecto-sp8_S_contig10306.503.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: D7G487_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G487_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.330e-31
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGY+VGPCLLFFFLFVVLGSS+FQVLK
Sbjct:    1 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSLFQVLK 59
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: D0MTV7_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0MTV7_PHYIT)

HSP 1 Score: 62.0 bits (149), Expect = 1.790e-11
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL SEKHL N+T+RG V + + E+K  GYSVGP L+ FFLFV++GSS+ Q+L+
Sbjct:    6 KMRLRSEKHLANITKRGQVSQPQKEDK--GYSVGPILMGFFLFVLVGSSVIQILR 58
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: A0A3M6VCY0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCY0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.120e-11
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL SEKHL N+T+RG V + + E K  GYSVGP LL FF+FV++GSSI Q+L+
Sbjct:    6 KIRLRSEKHLANITKRGLVSQPEKEEK--GYSVGPLLLGFFVFVLVGSSIIQILR 58
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: K3WKY6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKY6_GLOUD)

HSP 1 Score: 60.8 bits (146), Expect = 5.120e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL SEKHL N+T+RG V   K E  ++GY VGP LL FF+FV++GSS+ Q+L+
Sbjct:    6 KMRLRSEKHLANITKRGMV--SKPEKNESGYGVGPVLLGFFVFVLVGSSVIQILR 58
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: A0A2D4BJU9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJU9_PYTIN)

HSP 1 Score: 59.3 bits (142), Expect = 1.810e-10
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            RL SEKHL N+T+RG V   + + K++GY+VGP LL FF+FV++GSS+ Q+L+
Sbjct:    2 RLRSEKHLANITKRGLV--SQPDKKESGYTVGPVLLGFFIFVLVGSSVIQILR 52
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: A0A0N7L5X2_PLAHL (Stress-associated endoplasmic reticulum protein 2-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5X2_PLAHL)

HSP 1 Score: 58.2 bits (139), Expect = 5.970e-10
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            RL SEKHL N+T+RG V + K E+K  GYSVGP L  FF+FV++GS++ Q+L+
Sbjct:    8 RLRSEKHLANITKRGQVSQPKKEDK--GYSVGPILFGFFVFVLVGSALVQILQ 58
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: A0A4D9DDX7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDX7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.330e-10
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    7 SRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            SR TRL SEK  +NVT+RG+VP GK   ++    V P LL FF+FVV+GS+ FQ+++
Sbjct:    4 SRATRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIR 60
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: T2M9E3_HYDVU (Stress-associated endoplasmic reticulum protein 2 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M9E3_HYDVU)

HSP 1 Score: 57.0 bits (136), Expect = 1.750e-9
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            R+A+EKH QNVT RG+VPK  +  K   Y+VGP LL  FLFVV GS++FQ+++
Sbjct:    8 RVANEKHSQNVTMRGNVPK-TMNPKDEKYAVGPYLLGLFLFVVCGSAVFQIIQ 59
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BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: UPI00077A7D3F (stress-associated endoplasmic reticulum protein 2-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7D3F)

HSP 1 Score: 56.6 bits (135), Expect = 2.430e-9
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   19 RLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            R+A+EKH QN+T RG+VPK  +  ++  Y VGP LL  FLFVV GS+IFQ+++
Sbjct:    8 RVANEKHSQNITTRGNVPKS-LRPQEEKYPVGPILLGLFLFVVCGSAIFQIIQ 59
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Match: A0A485KRK7_9STRA (Aste57867_10511 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRK7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.980e-9
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   13 KTRLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVLGSSIFQVLK 177
            K RL +EKHL N+T+RG VP       + GY VGP L+ F  F+V+GS+I +VL+
Sbjct:    9 KLRLRNEKHLNNITKRGKVPTSARVTHEEGYKVGPVLMGFLFFLVVGSAILEVLR 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10306.503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G487_ECTSI1.330e-3196.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D0MTV7_PHYIT1.790e-1158.18Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A3M6VCY0_9STRA5.120e-1160.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
K3WKY6_GLOUD5.120e-1156.36Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A2D4BJU9_PYTIN1.810e-1054.72Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A0N7L5X2_PLAHL5.970e-1056.60Stress-associated endoplasmic reticulum protein 2-... [more]
A0A4D9DDX7_9STRA9.330e-1052.63Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
T2M9E3_HYDVU1.750e-956.60Stress-associated endoplasmic reticulum protein 2 ... [more]
UPI00077A7D3F2.430e-954.72stress-associated endoplasmic reticulum protein 2-... [more]
A0A485KRK7_9STRA3.980e-949.09Aste57867_10511 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10306contigEcto-sp8_S_contig10306:2255..3774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score61.6
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog4787.PITG_01701T0
Model size177
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006486,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0012505,GO:0019538,GO:0023052,GO:0030968,GO:0033554,GO:0034620,GO:0034645,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070085,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.Ribosome associated membrane protein RAMP4
EggNOG OGs2CZD0@1,2S9SE@2759,3QGRA@4776
Cds size177
COG Functional cat.U
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.6047435-CDS-Ecto-sp8_S_contig10306:2254..23651681143129.6047435-CDS-Ecto-sp8_S_contig10306:2254..2365Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10306 2255..2365 -
1681143129.6154861-CDS-Ecto-sp8_S_contig10306:3708..37741681143129.6154861-CDS-Ecto-sp8_S_contig10306:3708..3774Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10306 3709..3774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10306.503.1prot_Ecto-sp8_S_contig10306.503.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10306 2255..3774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10306.503.1

>prot_Ecto-sp8_S_contig10306.503.1 ID=prot_Ecto-sp8_S_contig10306.503.1|Name=mRNA_Ecto-sp8_S_contig10306.503.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=59bp
MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYSVGPCLLFFFLFVVL
GSSIFQVLK
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mRNA from alignment at Ecto-sp8_S_contig10306:2255..3774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10306.503.1 ID=mRNA_Ecto-sp8_S_contig10306.503.1|Name=mRNA_Ecto-sp8_S_contig10306.503.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1520bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10306:2255..3774- (Ectocarpus species8 EcLAC_412)
ATGTCTTCTCGCAAAACACGTTTGGCCAGCGAGAAGCACCTCCAAAATGT
CACACGGCGCGGCTCGGTGAGTTGGTGAAACGACGACTGAGTGTTGTGCA
TCCATCATCCACAACCGGTTGCTCTCTGTGCATCGTAGTTGGGCGAACAG
CAACCGCACGCCGCCTACAGCAGTAGTAGACCTTTGATCACTGCCCCGTA
GGTGGCGTGATACCGTTCACAGATTGCCTTCTAGCTGTTACCCACGTGTA
ACAAGCCCGGTGCTGCTCAGGGGACAGGTCGGGGAAGAGATATGTGGTGC
CTCGAGACTGCAGTATGTATGCATATCTACTGGCACGGTCAGGCCACGTG
CTTGTTTGGTACGGCACCTGTCCTGTGCTCTCCGCTTCGGACACAGCAAT
AGCCACCGTAAGGGGTCCTTACCAGCAACATCAATAGTGCGGGCGTGCTT
CACTCTTGCGCTCTAGGTGCCGTCCGTAGAGCTACAACGTGAGGTTCGGC
GCGCGGGGGAGGGTTAGAGCGGTTGGCAGCCTTTTACGTTCGGCGGCGAG
ACTACTGCTGTACGGTACCGCTACAAGCAGCAACAAAGGCGTTTACTACT
TTTGCTTGAAAAGCGATGTGAGGTACACACAAATGGAGCAATGCCAACAA
CGCGGCCCGCTTCTTGCAGACCTTACAATACACTTGTGATACACCAACGT
TGGGATGACGAGTTATACTGCAAACACTTTCAACAGCAGTATATGAGACT
GTAACGAGTCTCTCCGGAAGAACCTGACCGCGCTTCTTCCCGTGCAAACC
AGAGATAGACGGAGACATGCGGCGGGGGCTACGCCCTCTTGTTCGCCGCC
ACCTCGACGAGTTCAAGGACCTCATCATTGACTATTGATAAGAGTCGGTG
CCTTCCCTTACTACTGTCTGACATCTAGACAGGCGTGCGACTGGCGCGCC
GATCGTCTGTGTACGTGTGTTTGTCTGCTGCTGTGTTCACGAGTTACACC
AGCCGGCCACAACACACCACGTACGGAAGATATCACGAGGTGCCTGGCAC
CACCCACGTAGCTTGTAACAACCCGCTGAAATTGGCGTGCGAGCGTCCTA
TTGGCAGCGCGCTTTACGTGGGCGTGAGAAAATGACACCGCGGATAATCA
CAAGGGGGGAAAAATCCACGATAAGGCCAGCTGCGAGTGACAAGTAATGC
CGTTGCCTGTGTCTTCTGCCGTTTCGCTGAAAATCCTCCCAAAGCTTCAG
ACACGGAACGTCGACGTACTCGTAGAGGTGCTATTATTATCACGATGGTG
TAAGTCCATTTGGACGCAAAAAGCGCAACCCTTGTTCCTTTTCCGGACTG
ACCGTGGGCCTCTCGCTTCGTTTCCCCTGGACAACCTGACGATGACGATG
GCACTGTAGGTACCGAAGGGGAAGATCGAGAACAAGAAGACTGGCTACTC
GGTAGGACCGTGCCTGCTCTTCTTTTTCTTGTTCGTCGTGTTGGGGTCGA
GCATTTTCCAGGTCTTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10306:2255..3774-

>mRNA_Ecto-sp8_S_contig10306.503.1 ID=mRNA_Ecto-sp8_S_contig10306.503.1|Name=mRNA_Ecto-sp8_S_contig10306.503.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10306:2255..3774- (Ectocarpus species8 EcLAC_412)
ATGTCTTCTCGCAAAACACGTTTGGCCAGCGAGAAGCACCTCCAAAATGT
CACACGGCGCGGCTCGGTACCGAAGGGGAAGATCGAGAACAAGAAGACTG
GCTACTCGGTAGGACCGTGCCTGCTCTTCTTTTTCTTGTTCGTCGTGTTG
GGGTCGAGCATTTTCCAGGTCTTGAAG
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