mRNA_Ecto-sp8_S_contig103038.499.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103038.499.1
Unique NamemRNA_Ecto-sp8_S_contig103038.499.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig103038.499.1 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.650e-38
Identity = 104/127 (81.89%), Postives = 107/127 (84.25%), Query Frame = 1 
Query:    1 PGCGGRMLRDAREVFREGRHTSNARPRAAPFRSASTMQQCAAASGTESTVALWSCVDPWTGRPRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVGGALGLKEFMHRARVLELYRGVLK 381
            PGCGGRMLRD+ E FREG HT NARPR APFRSASTMQQCAAA GTEST A+WSCVDPWTGRPR      XXXXXXXXXXXXXXXXX  XXXXXXXXXXX     ALGLKEFMHRARVLELYRG+LK
Sbjct:   10 PGCGGRMLRDSTEAFREGSHTKNARPRVAPFRSASTMQQCAAACGTESTAAVWSCVDPWTGRPRPRSSSSXXXXXXXXXXXXXXXXXGSXXXXXXXXXXX-----ALGLKEFMHRARVLELYRGILK 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103038.499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JB99_9PHAE1.650e-3881.89Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103038contigEcto-sp8_S_contig103038:39..458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.4668329-CDS-Ecto-sp8_S_contig103038:38..4401681143129.4668329-CDS-Ecto-sp8_S_contig103038:38..440Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103038 39..440 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.4776769-UTR-Ecto-sp8_S_contig103038:440..4581681143129.4776769-UTR-Ecto-sp8_S_contig103038:440..458Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig103038 441..458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103038.499.1prot_Ecto-sp8_S_contig103038.499.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103038 39..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103038.499.1

>prot_Ecto-sp8_S_contig103038.499.1 ID=prot_Ecto-sp8_S_contig103038.499.1|Name=mRNA_Ecto-sp8_S_contig103038.499.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=134bp
MLRDAREVFREGRHTSNARPRAAPFRSASTMQQCAAASGTESTVALWSCV
DPWTGRPRSSSSSSSSCSSSSSRSRSRSSSSSSGSGGGGGGGGGGKVGGA
LGLKEFMHRARVLELYRGVLKVGERNERKGVETE
back to top

mRNA from alignment at Ecto-sp8_S_contig103038:39..458-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103038.499.1 ID=mRNA_Ecto-sp8_S_contig103038.499.1|Name=mRNA_Ecto-sp8_S_contig103038.499.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103038:39..458- (Ectocarpus species8 EcLAC_412)
CCAGGATGTGGCGGCCGGATGCTGCGAGACGCTAGGGAAGTCTTCCGAGA
AGGGCGCCACACCAGCAACGCTAGACCAAGGGCGGCGCCCTTCCGCTCGG
CCTCGACGATGCAGCAGTGCGCTGCTGCTTCCGGCACCGAGTCAACGGTA
GCATTGTGGAGTTGCGTCGACCCTTGGACTGGTCGACCGCGAAGCAGCAG
CAGCAGCAGCAGCAGCTGCAGCAGCAGCAGTAGCAGAAGCAGAAGCAGAA
GCAGCAGCAGTAGTAGTGGCAGCGGTGGCGGTGGCGGTGGCGGTGGTGGC
GGGAAAGTGGGCGGGGCCCTCGGGCTGAAAGAGTTCATGCACCGGGCCCG
AGTGCTGGAGCTGTATCGCGGGGTCTTGAAGGTGGGAGAGAGAAATGAGA
GGAAAGGGGTGGAGACAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103038:39..458-

>mRNA_Ecto-sp8_S_contig103038.499.1 ID=mRNA_Ecto-sp8_S_contig103038.499.1|Name=mRNA_Ecto-sp8_S_contig103038.499.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103038:39..458- (Ectocarpus species8 EcLAC_412)
ATGCTGCGAGACGCTAGGGAAGTCTTCCGAGAAGGGCGCCACACCAGCAA
CGCTAGACCAAGGGCGGCGCCCTTCCGCTCGGCCTCGACGATGCAGCAGT
GCGCTGCTGCTTCCGGCACCGAGTCAACGGTAGCATTGTGGAGTTGCGTC
GACCCTTGGACTGGTCGACCGCGAAGCAGCAGCAGCAGCAGCAGCAGCTG
CAGCAGCAGCAGTAGCAGAAGCAGAAGCAGAAGCAGCAGCAGTAGTAGTG
GCAGCGGTGGCGGTGGCGGTGGCGGTGGTGGCGGGAAAGTGGGCGGGGCC
CTCGGGCTGAAAGAGTTCATGCACCGGGCCCGAGTGCTGGAGCTGTATCG
CGGGGTCTTGAAGGTGGGAGAGAGAAATGAGAGGAAAGGGGTGGAGACAG
AG
back to top