mRNA_Ecto-sp8_S_contig103024.498.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig103024.498.1
Unique NamemRNA_Ecto-sp8_S_contig103024.498.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: D7FNG8_ECTSI (Enoyl-CoA hydratase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG8_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.600e-34
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 1
Query:   28 MMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLRR 222
            MMVQL+DAV+ELE+WDRGVALVVHGMGGNFCAGADLSLAREHLRTG DGRSMCALMSDTLTRLRR
Sbjct:    1 MMVQLSDAVDELEQWDRGVALVVHGMGGNFCAGADLSLAREHLRTGADGRSMCALMSDTLTRLRR 65          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: A0A835Z365_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z365_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.620e-18
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   13 ALSGTMMVQLADAVNELEKWDRGVALVVHGMGGN-FCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLR 219
            ALSG MMV+LADAV  +E+W RGVAL++   G   FCAGADL+LAR HL T  DGR MCALM+DTL RLR
Sbjct:   50 ALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLR 119          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: A0A7S4B265_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B265_CHRCT)

HSP 1 Score: 80.9 bits (198), Expect = 1.530e-16
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   13 ALSGTMMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRL 216
            AL GTMM+QLADAV+ELE W +GVALVV G G  FCAGADL LA++ + T   G+ M  LMS+TL R+
Sbjct:   66 ALCGTMMIQLADAVHELESWKQGVALVVTGAGRAFCAGADLHLAQKVINTPEQGQLMSELMSETLDRI 133          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: UPI0009E4858E (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4858E)

HSP 1 Score: 76.6 bits (187), Expect = 6.090e-15
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 1
Query:   13 ALSGTMMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRL 216
            AL+G MMV+LA+AV+ELE+W+ G AL++HG  G+FC+GADLS+ +  + T  +G  MCA M  TL+RL
Sbjct:   78 ALTGYMMVRLAEAVDELEQWEHGTALILHGSEGSFCSGADLSIVKT-INTPREGNLMCAFMQRTLSRL 144          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: B3RPF8_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RPF8_TRIAD)

HSP 1 Score: 75.9 bits (185), Expect = 1.210e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 KISTALSGTMMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLRR 222
            +I  ALSG+MMVQL DA+N+LE+W  G  +++ G    FC+GADL+LA++   +   G +MC LM  TLTRL+R
Sbjct:   78 RIRNALSGSMMVQLRDAINQLEEWKEGKGVILIGASSTFCSGADLNLAKQ-FNSPEHGEAMCELMQTTLTRLKR 150          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: A0A6P4ZPQ6_BRABE (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZPQ6_BRABE)

HSP 1 Score: 75.1 bits (183), Expect = 2.270e-14
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   13 ALSGTMMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLRR 222
            A++G MM+QLAD VN+L++W  G AL+VHG G  FC GADL++ R  L +   GR MCA M  TLT L R
Sbjct:   77 AVTGNMMLQLADIVNDLKEWKGGKALIVHGKGHTFCTGADLNMVRNMLDS-KHGREMCAFMHKTLTELHR 145          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: UPI000C03BA26 (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03BA26)

HSP 1 Score: 72.4 bits (176), Expect = 3.190e-14
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   13 ALSGTMMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLRR 222
            ALSG MMV+LA+ V+ELE+W  G A+V+HG  G+FC+GADLS+ +  + T  +G  MCA M  TL+RL R
Sbjct:   74 ALSGYMMVKLAEVVDELEQWLHGKAVVLHGSEGSFCSGADLSVIKA-INTPEEGTLMCAFMQRTLSRLGR 142          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: UPI001425B85F (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425B85F)

HSP 1 Score: 74.7 bits (182), Expect = 3.840e-14
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 KISTALSGTMMVQLADAVNELEKWDRGVALVVHGM--GGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLRR 222
            K + ALSG+MMV+LADA++ELE W  G A+V+ G   G NFCAGADL+  +E L+T   G  MC  M +TL+RL+R
Sbjct:   95 KNANALSGSMMVELADAISELENWSTGKAVVLRGSPEGKNFCAGADLTSMQE-LKTAQAGTMMCLFMQNTLSRLQR 169          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: UPI001CF45398 (ethylmalonyl-CoA decarboxylase-like n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF45398)

HSP 1 Score: 74.3 bits (181), Expect = 4.220e-14
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   13 ALSGTMMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLRR 222
            AL+G MMV+LA+ V+ELEKW  G  +V+HGM  +FC+GADLS+ +  + T  +G  MCA M  TLTRL R
Sbjct:   74 ALTGFMMVRLAECVDELEKWQSGKVVVLHGMERSFCSGADLSIIKA-INTPEEGNLMCAFMQRTLTRLAR 142          
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Match: A0A3M6TWR1_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TWR1_POCDA)

HSP 1 Score: 73.6 bits (179), Expect = 8.000e-14
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   13 ALSGTMMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGRSMCALMSDTLTRLRR 222
            AL+G MMV+LA+ V+ELE+W  G A+V+HG  G+FC+GADLS+ +  + T  +G+ MCA M  TL+RL R
Sbjct:   72 ALTGYMMVRLAEVVDELEQWQHGKAVVLHGSEGSFCSGADLSVIKA-INTPEEGQLMCAFMQRTLSRLGR 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig103024.498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG8_ECTSI3.600e-3493.85Enoyl-CoA hydratase domain-containing protein n=2 ... [more]
A0A835Z365_9STRA1.620e-1867.14ClpP/crotonase-like domain-containing protein n=1 ... [more]
A0A7S4B265_CHRCT1.530e-1661.76Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
UPI0009E4858E6.090e-1554.41ethylmalonyl-CoA decarboxylase-like n=1 Tax=Orbice... [more]
B3RPF8_TRIAD1.210e-1450.00Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A6P4ZPQ6_BRABE2.270e-1454.29ethylmalonyl-CoA decarboxylase-like n=1 Tax=Branch... [more]
UPI000C03BA263.190e-1454.29ethylmalonyl-CoA decarboxylase-like n=1 Tax=Stylop... [more]
UPI001425B85F3.840e-1453.95ethylmalonyl-CoA decarboxylase-like n=1 Tax=Anneis... [more]
UPI001CF453984.220e-1454.29ethylmalonyl-CoA decarboxylase-like n=2 Tax=Acropo... [more]
A0A3M6TWR1_POCDA8.000e-1452.86Uncharacterized protein n=1 Tax=Pocillopora damico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig103024contigEcto-sp8_S_contig103024:170..394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score127.9
Seed ortholog evalue1.8e-27
Seed eggNOG ortholog2880.D7FNG8
Preferred nameECHDC1
Model size225
KEGG rclassRC00097
KEGG koko:K18426
KEGG ReactionR00923
KEGG Pathwayko00640,map00640
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004300,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016829,GO:0016830,GO:0016831,GO:0016835,GO:0016836,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575
Exons1
EggNOG free text desc.enoyl-CoA hydratase activity
EggNOG OGsCOG1024@1,KOG1680@2759
EC4.1.1.41,4.1.1.94
Cds size198
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.4229975-CDS-Ecto-sp8_S_contig103024:169..3671681143129.4229975-CDS-Ecto-sp8_S_contig103024:169..367Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig103024 170..367 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143129.43605-UTR-Ecto-sp8_S_contig103024:367..3941681143129.43605-UTR-Ecto-sp8_S_contig103024:367..394Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig103024 368..394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig103024.498.1prot_Ecto-sp8_S_contig103024.498.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig103024 170..367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig103024.498.1

>prot_Ecto-sp8_S_contig103024.498.1 ID=prot_Ecto-sp8_S_contig103024.498.1|Name=mRNA_Ecto-sp8_S_contig103024.498.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=66bp
MMVQLADAVNELEKWDRGVALVVHGMGGNFCAGADLSLAREHLRTGPDGR
SMCALMSDTLTRLRR*
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mRNA from alignment at Ecto-sp8_S_contig103024:170..394-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig103024.498.1 ID=mRNA_Ecto-sp8_S_contig103024.498.1|Name=mRNA_Ecto-sp8_S_contig103024.498.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103024:170..394- (Ectocarpus species8 EcLAC_412)
AAAATATCGACAGCTCTTTCCGGCACGATGATGGTCCAGCTGGCCGATGC CGTGAACGAGCTGGAGAAATGGGACAGGGGGGTAGCCCTCGTAGTGCACG GGATGGGAGGAAACTTTTGCGCGGGGGCGGACCTGTCGCTCGCCAGGGAG CACCTGCGAACGGGCCCCGACGGCCGGTCCATGTGCGCCCTCATGTCCGA CACGTTGACGCGTCTCAGGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig103024:170..394-

>mRNA_Ecto-sp8_S_contig103024.498.1 ID=mRNA_Ecto-sp8_S_contig103024.498.1|Name=mRNA_Ecto-sp8_S_contig103024.498.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig103024:170..394- (Ectocarpus species8 EcLAC_412)
ATGATGGTCCAGCTGGCCGATGCCGTGAACGAGCTGGAGAAATGGGACAG
GGGGGTAGCCCTCGTAGTGCACGGGATGGGAGGAAACTTTTGCGCGGGGG
CGGACCTGTCGCTCGCCAGGGAGCACCTGCGAACGGGCCCCGACGGCCGG
TCCATGTGCGCCCTCATGTCCGACACGTTGACGCGTCTCAGGAGGTAA
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