mRNA_Ecto-sp8_S_contig102989.490.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102989.490.1
Unique NamemRNA_Ecto-sp8_S_contig102989.490.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102989.490.1 vs. uniprot
Match: D7G5A4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A4_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.020e-33
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:   13 QALDVYAKAAKRFPRKLDIYLDLAECVECVSPQQNIFVHQALASCLRRVVGKRYLGPDVKDLA 201
            QALDVYAKAAKRFPRKLDIYLDLAECVECVSPQQNIFVHQALASCLRRVVGKRYLGPDV+DLA
Sbjct:  209 QALDVYAKAAKRFPRKLDIYLDLAECVECVSPQQNIFVHQALASCLRRVVGKRYLGPDVRDLA 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102989.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5A4_ECTSI2.020e-3398.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102989contigEcto-sp8_S_contig102989:290..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score130.2
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog2880.D7G5A4
Preferred nameTFC4
Model size202
KEGG rclassRC00090,RC00166,RC01100
KEGG koko:K11788,ko:K12261,ko:K15201
KEGG ReactionR04144,R04208
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko04146,map00230,map01100,map01110,map01130,map04146
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
GOsGO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005667,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042791,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
Exons1
EggNOG free text desc.regulation of transcription by RNA polymerase III
EggNOG OGsKOG2076@1,KOG2076@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-14_006790.1
EC6.3.3.1,6.3.4.13
Cds size201
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143128.4368913-CDS-Ecto-sp8_S_contig102989:289..4901681143128.4368913-CDS-Ecto-sp8_S_contig102989:289..490Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102989 290..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102989.490.1prot_Ecto-sp8_S_contig102989.490.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102989 290..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102989.490.1

>prot_Ecto-sp8_S_contig102989.490.1 ID=prot_Ecto-sp8_S_contig102989.490.1|Name=mRNA_Ecto-sp8_S_contig102989.490.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=67bp
MNTLQALDVYAKAAKRFPRKLDIYLDLAECVECVSPQQNIFVHQALASCL
RRVVGKRYLGPDVKDLA
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mRNA from alignment at Ecto-sp8_S_contig102989:290..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102989.490.1 ID=mRNA_Ecto-sp8_S_contig102989.490.1|Name=mRNA_Ecto-sp8_S_contig102989.490.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102989:290..490+ (Ectocarpus species8 EcLAC_412)
ATGAACACCCTCCAGGCGTTGGACGTTTACGCGAAGGCCGCCAAGCGCTT
CCCGAGGAAGCTGGACATCTACCTTGACCTCGCGGAGTGCGTTGAGTGCG
TGTCTCCTCAGCAAAACATCTTCGTGCACCAGGCCTTGGCATCCTGTCTG
CGGCGTGTCGTCGGGAAAAGGTATCTCGGGCCAGACGTCAAGGATCTCGC
A
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102989:290..490+

>mRNA_Ecto-sp8_S_contig102989.490.1 ID=mRNA_Ecto-sp8_S_contig102989.490.1|Name=mRNA_Ecto-sp8_S_contig102989.490.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102989:290..490+ (Ectocarpus species8 EcLAC_412)
ATGAACACCCTCCAGGCGTTGGACGTTTACGCGAAGGCCGCCAAGCGCTT
CCCGAGGAAGCTGGACATCTACCTTGACCTCGCGGAGTGCGTTGAGTGCG
TGTCTCCTCAGCAAAACATCTTCGTGCACCAGGCCTTGGCATCCTGTCTG
CGGCGTGTCGTCGGGAAAAGGTATCTCGGGCCAGACGTCAAGGATCTCGC
A
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