mRNA_Ecto-sp8_S_contig10297.488.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10297.488.1
Unique NamemRNA_Ecto-sp8_S_contig10297.488.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 475 bits (1223), Expect = 2.740e-166
Identity = 238/252 (94.44%), Postives = 246/252 (97.62%), Query Frame = 1
Query:  307 ILLLITIWRVADARTFEASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDGKISDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            +LLLITI ++ADARTF+ASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGR ALVNAG+DGKVVYVQHSWVTLEGFSVDGKISDDD+AESYVDKCVFVEG STSGDERLEGFVMQDV VQNCGDECVRLKSF+VGAVISDNVIQDCGVRDFVYGN GKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVD+KEGSTGTIVE NTCSGQLDEDSGCFGSRGDGNVFR
Sbjct:    1 MLLLITIRQLADARTFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVNAGDDGKVVYVQHSWVTLEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFR 252          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 6.340e-86
Identity = 138/256 (53.91%), Postives = 189/256 (73.83%), Query Frame = 1
Query:  301 LLILLLITIWRVADARTFEASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDGKI--SDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            LL+LLL+     A A TF+AS DG  + +  A+  A AGDTV L DGTY+ A+V+V+GGE G+P+ ++GG GA++      + V + HS++TL+GF+V+GK+  SD D+A S+V+KCV+VEGP +     L+GFVM+D+ VQNCG ECVRLK  VV A ++ N I +CGV DF++ +  KNGEG+Y+GTSSTQW++G D CNDN + GN I+ +GNECVD+KEG++G +VE N CS QLD +SGC+ SRGDGN FR
Sbjct:   25 LLLLLLLLHSPSARAVTFDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRGGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITLKGFTVEGKVGTSDTDEA-SWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 5.440e-81
Identity = 129/244 (52.87%), Postives = 181/244 (74.18%), Query Frame = 1
Query:  337 ADARTFEASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDGKI--SDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            A A T++AS DG  + +  A+  A AGDTV L DGTY+ A+V+V+ GE G+P+ ++GG GA++      + V + HS++TL+GF+V+GKI  SD D+A S+V+KCV+VEGP +     L+GFVM+D+ VQNCG ECVRLK  V+ A +  N I +CGV D+++ +  KNGEG+Y+GTSSTQW++G D CNDN ++GN I+ +GNECVD+KEG++G ++E N CS QLD +SGC+ SRGDGN FR
Sbjct:   37 ARAVTYDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRDGEFGSPITVSGGPGAIIKGSYSSRSVLITHSFITLKGFTVEGKIGTSDTDEA-SWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQWTNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFR 279          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 6.670e-81
Identity = 125/243 (51.44%), Postives = 176/243 (72.43%), Query Frame = 1
Query:  337 ADARTFEASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDGKI-SDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDGPDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            A A T+  S DG    +  A+  A AGDTV L +GTY+ A+V+++ GE G+P+ + GG GA++      + V++ HS++TL+GFSV+GKI S+D    S+V+KCV+VEGP  +    L+GFVM+D+ VQNCG ECVRLK  VV A ++ N I +CGV D+++ ++ KNGEG+Y+GTSSTQW++G D CN N ++ N I+ +GNECVD+KEGS+G ++E N CS QLD +SGC+ SRGDGN FR
Sbjct:   37 AFAVTYNVSADGDGIDLYEAMDLAEAGDTVNLQNGTYDSALVSIRDGEFGSPITVAGGPGAIIKGSSSSRSVFITHSFITLKGFSVEGKIGSNDTDQASWVNKCVYVEGPGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQWTNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFR 279          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 1.450e-76
Identity = 136/265 (51.32%), Postives = 178/265 (67.17%), Query Frame = 1
Query:  340 DARTFEASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVN--AGEDG-----KVVYVQHSWVTLEGFSVDGKISDDDKAESYVDKCVFVEGPST------SGDE---RLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDG--------PDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            +A  +E SPDG P ++ +AL  AGAGD V LADGTY E IVT+  G  GNPL+ITGGRGA++N  +G+       KVV ++HS+VTLEGF++DG++ D+D  ESYVDKC+FVEG +        G E    L G V+  + +QNCG EC+R+++FV  AVI +N I++CG+ DF +  DGK GE IY+GTSS QW DG        PD  N N +TGN + P GNECVD+KEG+T  +VE N C  Q D +SGC+ SRG+ N FR
Sbjct:   31 NAAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTLEGFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFR 295          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 2.700e-75
Identity = 133/264 (50.38%), Postives = 174/264 (65.91%), Query Frame = 1
Query:  343 ARTFEASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVN--AGEDG-----KVVYVQHSWVTLEGFSVDGKISDDDKAESYVDKCVFVEGPSTSGDERLEG---------FVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDG--------PDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            A T+E SPDG P ++A+AL  AGAGDT+ L DG Y E +VT++ G  GNPL+I GGR A+VN   G+       KVV ++HSWVTL GF++DG+I D D  +S+VDKC+FVEG +   D   +G          V+  + +QNCG EC+R+++FV   VI DN I+DCG+ D+ Y  DGK GE IY+GTSS QW+DG        PD CN N +TGN + P GNECVD+KEG+T  +VE N C  Q D +SGC+ SRG+ N FR
Sbjct:   78 AATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRGFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFR 341          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.060e-66
Identity = 111/240 (46.25%), Postives = 165/240 (68.75%), Query Frame = 1
Query:  349 TFEASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDG-KVVYVQHSWVTLEGFSVDGKISDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDGPDE-CNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            T++ + DG  + +A A+  A AGDTV L DGTY +A+ TV+ GESGNP+ + GG GA++ A     + V+V HS++ L+GF+V+G+I  +   +SYV  C++V+GP +     L+GFVM++++VQNCG ECVRLK  V  A I  N I +CG+ D+++ +   NG+G+ +GTSS +W DG ++ C +N + GN I  + NECVDVKEG+ G ++E N C  QLD +SGC+ SRG+ N+FR
Sbjct:    2 TYDVTVDGDGFGLAEAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAIIKAQNSASRSVFVGHSFIELKGFTVEGQIGTEVTEDSYVLNCIYVQGPGSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEEDVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFR 241          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: A0A0G1XWI5_9BACT (Beta_helix domain-containing protein n=3 Tax=Candidatus Moranbacteria TaxID=1752737 RepID=A0A0G1XWI5_9BACT)

HSP 1 Score: 189 bits (481), Expect = 2.360e-53
Identity = 105/234 (44.87%), Postives = 145/234 (61.97%), Query Frame = 1
Query:  382 SIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDGKISDDDKAESYVDKCVFVEGPSTSGDER-LEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDGP------DECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            SI  A+  AG G  + LADGTY + IV+ + G + NP+ ITG   ++V  G+  +V+ + HS++TLE F+VDG +   D+   + DK ++V+G    GD + + G  +  +S++N G ECVRL+ F     I+DN I  CG  DF+    GKNGEGIY+GT+  Q  DG       D  N N + GNTI   GNECVDVKEGS+G +VE N C+GQ D +SG   SRG+GN+FR
Sbjct:   79 SIQKAIYLAGPGSAIHLADGTYMQNIVSKRDGTAKNPIRITGSPSSIVQGGKISRVIEINHSFITLENFTVDGLVGSPDEKSGFRDKLIYVQG---KGDGKGVTGLKVLKMSLKNAGGECVRLRYFAQKNEIADNTITGCGAYDFLLDGKGKNGEGIYIGTAPEQTDDGKNPTDERDHSNGNWVHGNTIDTQGNECVDVKEGSSGNLVENNVCTGQKDSESGGLDSRGNGNIFR 309          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: K2BA84_9BACT (Beta_helix domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=K2BA84_9BACT)

HSP 1 Score: 188 bits (478), Expect = 8.800e-53
Identity = 102/240 (42.50%), Postives = 149/240 (62.08%), Query Frame = 1
Query:  361 SPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDGKISDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDG------PDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            SPD    +I  AL +A AG+T+ LA G Y +  V+ + GESG P+ ITG + A+V  G + +V  + HS++TL GF++DGK    + A  Y DK +++ G        + G  + +++++N G ECVRL+  V  + I+ N I++CG+ DFV+G+ GKNGEG+Y+GT+  Q  DG      PDE N+N I  N     GNECVD+KE +   I+E N C+GQ D +SG F SRG+ N+FR
Sbjct:   84 SPDLAFRTIQKALDQATAGETINLAPGVYLQNFVSKRSGESGFPITITGPKEAVVKGGANARVAEINHSYITLSGFTLDGKFDSSNSASGYRDKLLYILGKEPK--VGITGTRIFNMAIRNAGGECVRLRYLVKFSEIAYNTIENCGIHDFVFGDGGKNGEGVYIGTAPEQLKDGKNPTSDPDESNNNWIHHNFFDTQGNECVDIKEAAAKNIIENNRCTGQKDSNSGGFDSRGENNIFR 321          
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Match: A0A1F6KJI5_9BACT (Beta_helix domain-containing protein n=1 Tax=Candidatus Levybacteria bacterium RIFCSPLOWO2_12_FULL_39_17 TaxID=1798636 RepID=A0A1F6KJI5_9BACT)

HSP 1 Score: 184 bits (466), Expect = 4.970e-52
Identity = 97/229 (42.36%), Postives = 144/229 (62.88%), Query Frame = 1
Query:  394 ALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDGKISDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLKSFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDG------PDECNDNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDGNVFR 1062
            AL +A AG+T+ LA G Y +  V+ + GESG P+ ITG + A+V  G + +V  + HS++TL GF++DGK    + A  Y DK +++ G        + G  + +++++N G EC+RL+  V  + I+ N I++CG+ DFV+G+ GKNGEG+Y+GT+  Q  DG      PDE N+N I  N     GNECVD+KE +   I+E N C+GQ D +SG F SRG+ N+FR
Sbjct:    4 ALDQATAGETINLAPGVYLQNFVSKRSGESGFPITITGPKEAVVKGGANARVAEINHSYITLSGFTLDGKFDSSNSASGYRDKLLYILGKEPK--VGITGTRIFNMAIRNAGGECIRLRYLVKFSEIAYNTIENCGIHDFVFGDGGKNGEGVYIGTAPEQLKDGKNPTSDPDESNNNWIHHNFFDTQGNECVDIKEAAAKNIIENNRCTGQKDSNSGGFDSRGENNIFR 230          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10297.488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT05_9PHAE2.740e-16694.44Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5LEX7_9PHAE6.340e-8653.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXR8_ECTSI5.440e-8152.87FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR9_ECTSI6.670e-8151.44FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K1D2_9PHAE1.450e-7651.32Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
D8LJ42_ECTSI2.700e-7550.38FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FZD2_ECTSI1.060e-6646.25FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A0G1XWI5_9BACT2.360e-5344.87Beta_helix domain-containing protein n=3 Tax=Candi... [more]
K2BA84_9BACT8.800e-5342.50Beta_helix domain-containing protein n=3 Tax=Bacte... [more]
A0A1F6KJI5_9BACT4.970e-5242.36Beta_helix domain-containing protein n=1 Tax=Candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10297contigEcto-sp8_S_contig10297:195..5446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score186.4
Seed ortholog evalue2.3e-44
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
Model size1067
Hectar predicted targeting categorymitochondrion
Exons6
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
Cds size1065
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10297.488.1prot_Ecto-sp8_S_contig10297.488.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10297 195..5446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143128.327707-CDS-Ecto-sp8_S_contig10297:194..3861681143128.327707-CDS-Ecto-sp8_S_contig10297:194..386Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10297 195..386 -
1681143128.338724-CDS-Ecto-sp8_S_contig10297:1042..11871681143128.338724-CDS-Ecto-sp8_S_contig10297:1042..1187Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10297 1043..1187 -
1681143128.3481524-CDS-Ecto-sp8_S_contig10297:2134..22801681143128.3481524-CDS-Ecto-sp8_S_contig10297:2134..2280Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10297 2135..2280 -
1681143128.359488-CDS-Ecto-sp8_S_contig10297:2932..29691681143128.359488-CDS-Ecto-sp8_S_contig10297:2932..2969Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10297 2933..2969 -
1681143128.3674273-CDS-Ecto-sp8_S_contig10297:3370..35091681143128.3674273-CDS-Ecto-sp8_S_contig10297:3370..3509Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10297 3371..3509 -
1681143128.3767312-CDS-Ecto-sp8_S_contig10297:5040..54461681143128.3767312-CDS-Ecto-sp8_S_contig10297:5040..5446Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10297 5041..5446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10297.488.1

>prot_Ecto-sp8_S_contig10297.488.1 ID=prot_Ecto-sp8_S_contig10297.488.1|Name=mRNA_Ecto-sp8_S_contig10297.488.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=355bp
IFRQARPTPHAVALRSLLRGREDLYPGEADSAATTSNRLLANISHCCAAL
LGVATLQRTVRLEEVRHKHRHRPLASTTMAISSSSSFLGGSINRLRLCAP
LLILLLITIWRVADARTFEASPDGVPYSIASALAEAGAGDTVVLADGTYN
EAIVTVQGGESGNPLIITGGRGALVNAGEDGKVVYVQHSWVTLEGFSVDG
KISDDDKAESYVDKCVFVEGPSTSGDERLEGFVMQDVSVQNCGDECVRLK
SFVVGAVISDNVIQDCGVRDFVYGNDGKNGEGIYVGTSSTQWSDGPDECN
DNTITGNTITPNGNECVDVKEGSTGTIVEGNTCSGQLDEDSGCFGSRGDG
NVFR*
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mRNA from alignment at Ecto-sp8_S_contig10297:195..5446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10297.488.1 ID=mRNA_Ecto-sp8_S_contig10297.488.1|Name=mRNA_Ecto-sp8_S_contig10297.488.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10297:195..5446- (Ectocarpus species8 EcLAC_412)
ATATTCCGACAGGCCCGACCGACACCACACGCTGTTGCACTTCGCTCACT GCTGCGCGGCAGAGAAGACTTGTACCCAGGCGAGGCCGATTCTGCAGCTA CAACAAGCAACCGATTGCTTGCCAACATTAGTCACTGCTGTGCTGCGTTG TTGGGAGTTGCCACACTACAGCGAACGGTGCGACTAGAAGAGGTCCGACA CAAGCACCGCCATCGCCCTCTCGCTTCGACGACCATGGCAATATCATCAT CATCATCCTTTCTTGGTGGTAGCATCAACCGGTTGCGGCTGTGTGCGCCG CTCTTGATACTGTTGCTCATCACGATCTGGCGGGTAGCGGACGCACGGAC GTTCGAAGCGTCCCCCGACGGCGTGCCGTACTCCATCGCCAGCGCCTTGG CCGAAGGTGGGTGCCCCTGTAGAGTAGTAGCAGGCGTGCCAACATTTCCT CTGTGAACAAGTTGGTCTATCTTCGTTATACTGCTTTTGGTTTTTCATGA TGTTCAAATGTTCAAGTCTTTCTCGGAGACCATCAGTGAGATCCAGTGTT TTTTCGGGGTCCGCCCCATCCTCTCTCTTCGCGGAAACGGTTTCGAACTT TGAGAACACAGGGCGGAGGGGCGACAATGCACGCGGTGGTAGTCTCCGTC GGCTGCTGACCTGATGCATGGCTTTATTTTTATCGTTAACAGCACTTGCC GACCTGTTTTTCGTCGCGTCGTAAACAGCACTTCCTACCTGTTTTCCGTC CCGTCGTAAACAGCACTTCCTAACCTGTTTTTCGTCGCGTCGTAAACAGC ACTTCCTACCTGTTTTCCGTCGCGTCGTAAACAGCACTCCTGCCTGTTTT CCGTCGCGTCGTTAACAGCACTTACAGACCTGTTTTACGTACAAAAGCGT GGTTTCGCTCGGCCGTGTGGCCCAACCCTCATGCGCAGCGGCAGCAGATA AATACTTGGTTCACGTACACGAGATTCGGGTGCCGCCCTCCTCTCTGTTG ACGGCCTAGACTACAGGACTGAGTGTCAACTCAGCCGCTTTTCGCCTCGC CCCACGGCCGACGCGTCGGGCAATCTGCACGCTACCAGCAGTACGGTTGT TTGAAGGTGGTAATGAGCAGAGGTCGCAGCGGTCGTTTTTTGTTGTTGGA GGACAACAAGAACGATATACAGTGGGGGGGCCTCTATAGTGCCGGTTGAA TAGTGCCACTCCCCGGTGTAGTGCCGGTGAAATCTCTGGACACACATCGC ATATTTCACGGTGTTTCATACTCTGAATAGTGTCGGTGTTCTGGTCTGGC CCATACCGGCACTACTGAGAGCCCCCTACTGTACCCAGAGTAGGCCGTAC GACGAGTCGACACGAGTTTTTGTCTCAAAGAACAGCAGTGCTGCAATGGA TATACAGCAGTGTGCCACCAGAGTGTTCAGATGCTCGAGGGCACGGTGGG CAGAGATCGGAACGGAGATTTTCGAAGACGACAACAACAACAACAACAAC AACAACAACAACAACAATAAAAAAATAAAAACCGCCACCACCACGACAAC CACCACCTCAACGTTTGCAACCCCATTGCTAAAGCGGTTTATCTGTGTCT CTCTCTCTTTTTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCT CTCTCTCTCCCTCTCTCCCTCCCTCTCTCTCTTTCTCCCTCTCTCTTTCT TTATCTCTCTCTTTCTTTCTTTCTCTCTGTCTTTTTCTCTCTCTTTTTTT CTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCCCTCTGTCCCTCTGTCCCCCTCTCTCCCTGC GTCTGTCCCTCCCTCCCCTCTCTCGCTCCGCTCTTACAACGTTCTCCAAC GTCCTCTCTCTCTCCCCCCATACAACGCCGCATGCAGCCGGAGCGGGTGA CACGGTCGTCCTCGCGGACGGAACGTACAACGAGGCTATCGTGACGGTGC AGGGAGGGGAGAGCGGTAACCCCCTCATCATCACCGGGGGCAGGGGCGCC TTGGTCAACGCTGGCGAAGACGGAAAGTGAGACATCCTCCTCGTCTTGTT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTATTGTTGTTGTTGGCGTTGTTGTTGTTGGTGGTGTTGTTGTTG TTGTTGTTGGTGTTGGTGTTGGTGTTGGTGGTGGTGGTGGCATTGGCGGT GGCGTTGGTGTTGTCGCTGTTTTCTCTATTGTTGCTGTTGCTGTTGTTAT TTGTGTGGTTGGTGTTGATAGTGTTGATGATGCCGCCGTCCATGTAGATC ACCATGTACGTGCCTGCCCTGCCTGATCCTACCCGCCGCCCCCTTGCTTC ACCATGGCACCATGGATTGATTTCCTGCCTACCGATGGCGACATGGACGC GGCCTGACGTACGACGGCGACAAGCAGGGTCGTGTATGTGCAGCACTCAT GGGTCACCCTGGAGGTAAGCGCTCTGGTTCCAAACCTGGTCGTGCAGACT AATAGCACTAGGTGCAAGCAACACGGGGGGGACGTCCTCCAAGCAGATAC CAGTCTGTTCAGAAACACAAGGACCGTTGTTCCGATGCGGACGTGAATGT CGCAATGTTCTCTATATTTCCGGACAGAGCTGTAGGTTGCACCATCATAG CCTCATGCTGCCGGCTCCTCCTCCTCCTCCCCTAGATGTGGTCGAGCTAC CCCCGTAGCTCAAGGGAGTCTCTGTCTTATATCGTCCCTCTTCGCTTTCT GCCCCCCTCCCACGCTGTGTGTATGTCTCTATCCCCCCGTCTCCCCCCCC CCCCCCCTCTCTCCCTGCCTCCCCCTGTCCCTTCCCCCTCCCTCTCCCTC CCCCTGTATCTTCTCTCTCCGTCGCTCTCTCTCTCTCTCTCTCTCTCTCG CTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCCCCTCCCTCTCCC TCTCTCCCTCTCTCTCTCTCTCTCTCTGTCCCTCCCTCCCTCTCTTCTTT CTCCCTCTGTCTGTCTGTCTGTCTGTCTGTTTTTCTCTCTCTTTCTCTCT CTCCTGCTCCCGCCCTCTCTCTCCCTCCCTCCCTCCATATCACCCCCCCG CCCTCTCCCTCTCCAGGGATTTTCCGTGGACGGCAAGATCTCGGACGATG ACAAGGCGGAGTCCTACGTGGACAAGTGCGTGTTCGTGGAGGGCCCTAGC ACAAGCGGAGACGAGCGGCTGGAAGGATTCGTCATGCAAGACGTCTCTGT TCAAAACTGCGGGTGAGAGAAGAGACGGGAGAACGTCATGATGTACGGGA AAAGTCGTTTTGCTGGTGGATGAGACGCCGCCGTATGGGGTAGGGGGAAA CGCGGTTGACAAAAGGATGAGAGCAAATACGGGAGACCTCTTGATGAAGG GGAAAGGAAGGTAGGTTTGCGGGTTGATGGAACATCGCCTTGTGGTAGGA GGAAACACGGTTTGCGGAAGGATGAGACAAGAGACGGGGGAGACCTCTTG ATATACGGGAAAACACGGATTGCGGATTGATGAGAGACGTGGAGGCGGTC GACGTGTGGGGACAACGCGGAGTGGGGATGGATGAGAGAGGCGGGGAGGG GGGGAGAGCGTCATGAAAACGCGAAATGCGGGTGGATGATCATACTTCCC CCAGCAATTGAAAAGCTGGTTTCCCCTTCCGCGCTCATTTTCAGTTTTGA ACAGTTTGACGAAATTCTCCGCGTGTTCAAGTGAAACCACTTCACTTTTT GGCAATAGTGGGATGAGTGACAGAAACCAGCTTCCAGCCTTAGCGAGCCC TGACAGGCCACGATTCGTTTCACTCGGACTAATCTTGTGTACTTCGAAGC ACCTCCGCCGGTTCCGATTGTCTGGTCTTTTTTTTTTTTTTCGAAAAACG GGATGAGAGCGTGCAGTGAAGTATTTAGTATTATCTTAGACAGATATATT TTTTCTTACACCGTGGGTTCCGATTGTCTGTCTTCTTTTTCCCTTTTTTC GAAAAATGGGATGAGTGCGTGCAGTGAAGTATTTTTTATTTAGACAGAAA TGGTTTTCACGCCGCGGGTTCCGGTTGTCTGTCTTCTTTCTCTTTTTCGA ATAATAAGGGATGAGTGCGTACAGGGAAGTATTTTTTTAGACAGAAATGG CTTTTAACAAGCGCGGGTTCCGGTTGTCTGTCTTCTTTTTTTGTTTTTCG AATATACAGGGATGAGTGCGTGCGGCTGAAGAGCTTTGTAGTCGGCGCCG TGATCAGCGACAACGTTATCCAGGACTGCGGTGTTAGGGACTTCGTGTAC GGCAACGACGGGAAGAACGGGGAAGGAATCTACGTCGGGACCTCCAGCAC TCAGGTACATGCATGTACGTGTGTGATAGGTGCAGTGTTGATCGAGTGAT GGCCTGGGGGACGTTGCCACCTCTCTCTCTCTCGATCTCTCTCTCTCTCT CTGTCTCTGTCTCTCTCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGT CTCTCTGTCTCTCTGTCGACGGATCTCTGCTGTTGCCGTTGTTGTTCTCT TTGTTGTTGTTGGTGGTAGTGGTTGCAATGGGTGCCTTTGGCATCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CACTCTCTCTCAACATTTCTGTTGTTGGCGGTGTTGACGCTGCCCTTGTC GTCGACGGCTTGTCAACGGTAGTCATTGTAGAGTGGTGGCGATGTTCTCC TTTATTGTGCCTTCGGTGACACCATCCCTACCCCTCACCACTTCCGACAG TGGGCTGACGGCCCTGACGACGGCAAAGACATCATGATAATCCTGGCTAG CCCTAACCGTAAACCTGAACCTCGATTTCGACGGCGATCTAACGGCCCTG ACGACTGCAAAGACATGTCGACAGCGATCTGACGGCTCTGACGAGAGCGA ATACAGCACGATAACTCTTGCCCTAATCCTACCCCTAATCCTACCCCTCG CTTTCGACAGTGGTCTGACGGCCCTGACGAGTGCAACGACAACACCATCA CGGGGAACACCATCACCCCGAACGGCAACGAGTGCGTGGACGTCAAGGAG GGATCGACGGGAACCATCGTCGAGGGCAACACGTGCAGCGGGCAGCTGGA CGAGGACTCCGGGTGCTTCGGCTCCAGGGGGGATGGCAACGTGTTTCGGT GA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10297:195..5446-

>mRNA_Ecto-sp8_S_contig10297.488.1 ID=mRNA_Ecto-sp8_S_contig10297.488.1|Name=mRNA_Ecto-sp8_S_contig10297.488.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10297:195..5446- (Ectocarpus species8 EcLAC_412)
ATATTCCGACAGGCCCGACCGACACCACACGCTGTTGCACTTCGCTCACT
GCTGCGCGGCAGAGAAGACTTGTACCCAGGCGAGGCCGATTCTGCAGCTA
CAACAAGCAACCGATTGCTTGCCAACATTAGTCACTGCTGTGCTGCGTTG
TTGGGAGTTGCCACACTACAGCGAACGGTGCGACTAGAAGAGGTCCGACA
CAAGCACCGCCATCGCCCTCTCGCTTCGACGACCATGGCAATATCATCAT
CATCATCCTTTCTTGGTGGTAGCATCAACCGGTTGCGGCTGTGTGCGCCG
CTCTTGATACTGTTGCTCATCACGATCTGGCGGGTAGCGGACGCACGGAC
GTTCGAAGCGTCCCCCGACGGCGTGCCGTACTCCATCGCCAGCGCCTTGG
CCGAAGCCGGAGCGGGTGACACGGTCGTCCTCGCGGACGGAACGTACAAC
GAGGCTATCGTGACGGTGCAGGGAGGGGAGAGCGGTAACCCCCTCATCAT
CACCGGGGGCAGGGGCGCCTTGGTCAACGCTGGCGAAGACGGAAAGGTCG
TGTATGTGCAGCACTCATGGGTCACCCTGGAGGGATTTTCCGTGGACGGC
AAGATCTCGGACGATGACAAGGCGGAGTCCTACGTGGACAAGTGCGTGTT
CGTGGAGGGCCCTAGCACAAGCGGAGACGAGCGGCTGGAAGGATTCGTCA
TGCAAGACGTCTCTGTTCAAAACTGCGGGGATGAGTGCGTGCGGCTGAAG
AGCTTTGTAGTCGGCGCCGTGATCAGCGACAACGTTATCCAGGACTGCGG
TGTTAGGGACTTCGTGTACGGCAACGACGGGAAGAACGGGGAAGGAATCT
ACGTCGGGACCTCCAGCACTCAGTGGTCTGACGGCCCTGACGAGTGCAAC
GACAACACCATCACGGGGAACACCATCACCCCGAACGGCAACGAGTGCGT
GGACGTCAAGGAGGGATCGACGGGAACCATCGTCGAGGGCAACACGTGCA
GCGGGCAGCTGGACGAGGACTCCGGGTGCTTCGGCTCCAGGGGGGATGGC
AACGTGTTTCGGTGA
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