mRNA_Ecto-sp8_S_contig102918.483.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102918.483.1
Unique NamemRNA_Ecto-sp8_S_contig102918.483.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: D8LBM7_ECTSI (Mitochondrial phosphate carrier protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBM7_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 3.290e-114
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 1
Query:    1 LPDEYASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPGQYAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            LP++YASVAHAGAAAGADL+QSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEW KSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPGQYAGIGGCLRSILKEEG GALFAGSVPRMTSIAFGGAIFFGAYE
Sbjct:  132 LPEDYASVAHAGAAAGADLAQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWFKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPGQYAGIGGCLRSILKEEGPGALFAGSVPRMTSIAFGGAIFFGAYE 307          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: A0A835Z0V7_9STRA (Mitochondrial phosphate carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0V7_9STRA)

HSP 1 Score: 241 bits (615), Expect = 7.380e-77
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1
Query:    4 PDEYASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVD-ASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPG---QYAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            P   A   H  AAAGADL+QSVVR PFEV+KQR+QAG++  S R  ++ + KS+G +G YRGWGALALRDLPFDIIEFP+YE+ K EW ++KG  LAPWQGSLCGSVAGGIAA LTTPLDVVKTRLMTQ+ G   QY  +  CL+ +++EEG GAL+AG VPRMTSIAFGGAIFFGAYE
Sbjct:  125 PAHLAPFVHCAAAAGADLTQSVVRAPFEVVKQRMQAGIELGSARNIVSGIAKSEGLKGFYRGWGALALRDLPFDIIEFPMYEYFKKEWARIKGAPLAPWQGSLCGSVAGGIAAALTTPLDVVKTRLMTQTLGSGTQYLNVMDCLKQVVREEGVGALWAGVVPRMTSIAFGGAIFFGAYE 303          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: A0A7S3YHQ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHQ5_HETAK)

HSP 1 Score: 217 bits (553), Expect = 3.100e-67
Identity = 109/174 (62.64%), Postives = 130/174 (74.71%), Query Frame = 1
Query:    7 DEYASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPGQYAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            ++YA + H  AAAG DL+ SVVR PFEV+KQR+QAGVD S  AAL +V+K+ GP G YRGW ALALRDLPFD IE+PLYE LK ++ + KG  L P +GSLCGS++GGI A LTTPLDV KTRLM   PG Y G+  CL  + +EEGAGALF G  PR+  I  GGA+FFGAYE
Sbjct:  149 EKYAPLVHLAAAAGGDLAASVVRAPFEVVKQRLQAGVDPSAAAALRNVLKAGGPGGFYRGWSALALRDLPFDAIEYPLYELLKKKFAEAKGGALTPLEGSLCGSLSGGITAALTTPLDVAKTRLMISEPGAYKGLWDCLGKVAREEGAGALFTGLAPRVGMITLGGAVFFGAYE 322          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: A0A4D9D701_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D701_9STRA)

HSP 1 Score: 216 bits (551), Expect = 3.210e-66
Identity = 113/167 (67.66%), Postives = 132/167 (79.04%), Query Frame = 1
Query:   37 AAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPGQ---YAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            AAAG DL+QSVVRVPFEV+KQR+QAGV+ + R A+ ++M S GPRG + GW ALALRDLPFDIIEFPLYE LK  W + KG KL  W+ S+CGS+AGGIAAGLTTPLDVVKTRLMTQ  G    YAG+  CL  + +EEG GAL+ G VPR+ +IA GGAIFFGAYE
Sbjct:  180 AAAGGDLTQSVVRVPFEVVKQRMQAGVERTWRDAVRNIMASTGPRGFFAGWSALALRDLPFDIIEFPLYEALKDVWAERKGGKLETWESSVCGSLAGGIAAGLTTPLDVVKTRLMTQRRGSGQVYAGLLDCLVRVAREEGIGALYKGLVPRVVNIALGGAIFFGAYE 346          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: K8Z4E8_NANGC (S-adenosylmethionine mitochondrial carrier protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E8_NANGC)

HSP 1 Score: 215 bits (548), Expect = 4.390e-65
Identity = 114/167 (68.26%), Postives = 133/167 (79.64%), Query Frame = 1
Query:   37 AAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQ--SPGQ-YAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            AAAG DL+QSVVRVPFEV+KQR+QAGV+ + R A+ ++M S GPRG + GW ALALRDLPFDIIEFPLYE LK  W + KG KL  W+ S+CGS+AGGIAAGLTTPLDVVKTRLMTQ    GQ YAG+  CL  + +EEG GAL+ G VPR+ +IA GGAIFFGAYE
Sbjct:  243 AAAGGDLTQSVVRVPFEVVKQRMQAGVERTWREAVRNIMASTGPRGFFAGWSALALRDLPFDIIEFPLYEALKDVWAERKGGKLETWESSVCGSLAGGIAAGLTTPLDVVKTRLMTQRRDSGQVYAGLLDCLVRVAREEGIGALYKGLVPRVVNIALGGAIFFGAYE 409          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: A0A6T6BMA0_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6BMA0_9RHOD)

HSP 1 Score: 195 bits (495), Expect = 5.700e-58
Identity = 103/174 (59.20%), Postives = 130/174 (74.71%), Query Frame = 1
Query:   16 ASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPG---QYAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            A++ H  AAAG D+  S VR PFEV+KQR+Q G  +SG  A+ S++ S+G  GLY G+ +L LR+LPFD+IEFPLYE+LK+ WT+ +G+ L  WQ SLCGS AGG+AA LTTPLDVVKTRLM Q  G   +Y GI   +++ILKEEGA ALFAG +PR+  I+ GGAIFFG YE
Sbjct:  200 ATLTHLVAAAGGDIVGSTVRAPFEVVKQRMQTGAYSSGITAVRSILASEGVGGLYAGYLSLVLRELPFDLIEFPLYEFLKASWTRRRGQTLDTWQNSLCGSAAGGVAAALTTPLDVVKTRLMVQGAGGSVKYLGIQHGIQTILKEEGAAALFAGILPRVIWISLGGAIFFGGYE 373          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: A0A7J7IND2_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IND2_9RHOD)

HSP 1 Score: 188 bits (477), Expect = 8.860e-58
Identity = 97/166 (58.43%), Postives = 122/166 (73.49%), Query Frame = 1
Query:   37 AAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPG--QYAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            AAAG DL+ SVVRVPFEV+KQ +QAG   S   A+ +++  +G RGLYRGWG+L  R++PFDI+EFPLYE  K  W++ KG+ L  W+ +LCGS AG IAA  TTPLDVVKTRLMTQS G   Y GI   ++ I +EEG GALF+G+ PR+  I+ GGA+FFG YE
Sbjct:    3 AAAGGDLAGSVVRVPFEVVKQNLQAGQYRSSVVAVKAIVAKEGLRGLYRGWGSLIAREIPFDILEFPLYEAFKKMWSRRKGKSLDTWESALCGSAAGAIAAACTTPLDVVKTRLMTQSVGVQAYRGIWASMQRIAREEGVGALFSGTTPRVLWISLGGALFFGGYE 168          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: A0A7S0BKG7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BKG7_9RHOD)

HSP 1 Score: 187 bits (474), Expect = 9.910e-57
Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    7 DEYASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEK-LAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQS-PGQYAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            ++ A++ H  AAAG D++ S VRVPFEV+KQR+QAG   S   A+ S++ S+G RGLY G+G+L +R++PFD+IEFPLYE+LK  W +  G+K LA WQ +LCGS AGG AAG+TTPLDVVKTRLM Q  PG+Y+G+   L+ I  EEG   L +G VPR+  I+ GG IFFG YE
Sbjct:   43 EKLATLHHMVAAAGGDIAGSAVRVPFEVVKQRLQAGAYTSASQAVRSILASEGVRGLYTGFGSLVIREMPFDLIEFPLYEYLKVIWARNNGDKPLATWQTALCGSAAGGFAAGVTTPLDVVKTRLMLQKQPGKYSGVLDALKKISAEEGVQVLASGIVPRVLWISLGGFIFFGGYE 218          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: A0A7S2ZWA6_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZWA6_9RHOD)

HSP 1 Score: 187 bits (475), Expect = 1.410e-55
Identity = 99/176 (56.25%), Postives = 128/176 (72.73%), Query Frame = 1
Query:    7 DEYASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEK-LAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQS-PGQYAGIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
            ++ A+  H  AAAG D++ S VRVPFEV+KQR+QAG   S   A+ S++ S+G RGLY G+G+L +R++PFD+IEFPLYE+LK  W +  G+K LA WQ +LCGS AGG AAG+TTPLDVVKTRLM Q  PG+Y+G+   L+ I  EEG   L +G VPR+  I+ GG IFFG YE
Sbjct:  148 EKLATFHHMVAAAGGDIAGSAVRVPFEVVKQRLQAGAYTSASQAVKSILASEGVRGLYTGFGSLVIREMPFDLIEFPLYEYLKVVWARHNGDKPLATWQTALCGSAAGGFAAGVTTPLDVVKTRLMLQEQPGKYSGVWDALKKISAEEGVQVLASGIVPRVLWISLGGFIFFGGYE 323          
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Match: M1V6P2_CYAM1 (Probable mitochondrial carrier proteins Pet8p n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V6P2_CYAM1)

HSP 1 Score: 182 bits (462), Expect = 7.410e-54
Identity = 94/178 (52.81%), Postives = 122/178 (68.54%), Query Frame = 1
Query:    1 LPDEYASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASVMKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQGSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPGQYA--GIGGCLRSILKEEGAGALFAGSVPRMTSIAFGGAIFFGAYE 528
             P     + H  AA G DL+ S +RVPFEV+KQ +QAG   S   A+++++  +G RGLYRGWG+L  R++PFDI+EFPLYE  K  W++ KG  L  W+ +LCGS AGGIAA  TTPLDVVKTRLMT+S       GI G ++ I +EEG G LF+G+ PR+  I+ GGA+FFG YE
Sbjct:  120 FPQSAPPLVHMVAAVGGDLAGSFMRVPFEVVKQNLQAGYYRSSVDAVSAIVSKEGIRGLYRGWGSLIAREVPFDILEFPLYEAFKKIWSRRKGRALETWESALCGSAAGGIAAACTTPLDVVKTRLMTRSASAATQQGIWGTMQQIAREEGIGTLFSGTTPRILWISLGGALFFGGYE 297          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102918.483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBM7_ECTSI3.290e-11497.16Mitochondrial phosphate carrier protein n=2 Tax=Ec... [more]
A0A835Z0V7_9STRA7.380e-7768.72Mitochondrial phosphate carrier protein n=1 Tax=Tr... [more]
A0A7S3YHQ5_HETAK3.100e-6762.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D701_9STRA3.210e-6667.66Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
K8Z4E8_NANGC4.390e-6568.26S-adenosylmethionine mitochondrial carrier protein... [more]
A0A6T6BMA0_9RHOD5.700e-5859.20Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7J7IND2_9RHOD8.860e-5858.43Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S0BKG7_9RHOD9.910e-5756.25Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZWA6_9RHOD1.410e-5556.25Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
M1V6P2_CYAM17.410e-5452.81Probable mitochondrial carrier proteins Pet8p n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102918contigEcto-sp8_S_contig102918:2..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score341.3
Seed ortholog evalue2.7e-91
Seed eggNOG ortholog2880.D8LBM7
Model size528
KEGG koko:K15111
KEGG TC2.A.29.18
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
Cds size528
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143128.0782812-CDS-Ecto-sp8_S_contig102918:1..5291681143128.0782812-CDS-Ecto-sp8_S_contig102918:1..529Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102918 2..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102918.483.1prot_Ecto-sp8_S_contig102918.483.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102918 2..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102918.483.1

>prot_Ecto-sp8_S_contig102918.483.1 ID=prot_Ecto-sp8_S_contig102918.483.1|Name=mRNA_Ecto-sp8_S_contig102918.483.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=176bp
LPDEYASVAHAGAAAGADLSQSVVRVPFEVIKQRVQAGVDASGRAALASV
MKSQGPRGLYRGWGALALRDLPFDIIEFPLYEWLKSEWTKVKGEKLAPWQ
GSLCGSVAGGIAAGLTTPLDVVKTRLMTQSPGQYAGIGGCLRSILKEEGA
GALFAGSVPRMTSIAFGGAIFFGAYE
back to top

mRNA from alignment at Ecto-sp8_S_contig102918:2..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102918.483.1 ID=mRNA_Ecto-sp8_S_contig102918.483.1|Name=mRNA_Ecto-sp8_S_contig102918.483.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=528bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102918:2..529+ (Ectocarpus species8 EcLAC_412)
CTGCCGGACGAGTACGCCTCCGTCGCGCACGCCGGGGCGGCGGCCGGCGC GGACCTCTCCCAGAGCGTCGTCCGAGTGCCCTTCGAGGTCATCAAGCAGC GGGTGCAGGCGGGCGTGGACGCCTCCGGGAGAGCCGCCCTCGCCAGCGTC ATGAAGTCGCAGGGGCCCAGGGGCCTCTACCGGGGCTGGGGCGCGCTGGC CCTGCGAGACCTTCCCTTCGACATCATCGAGTTCCCGCTCTACGAGTGGC TCAAGAGCGAGTGGACCAAGGTCAAGGGGGAGAAGCTGGCGCCCTGGCAG GGCTCCCTGTGCGGGTCGGTCGCGGGGGGCATCGCTGCCGGGCTCACGAC CCCGCTCGACGTCGTCAAGACGCGGCTCATGACCCAGAGCCCCGGGCAGT ACGCCGGCATTGGCGGGTGCTTGAGATCAATCCTGAAGGAGGAGGGGGCG GGGGCGCTGTTCGCCGGGTCGGTGCCGAGGATGACGTCCATCGCCTTCGG CGGCGCCATCTTCTTCGGCGCGTACGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102918:2..529+

>mRNA_Ecto-sp8_S_contig102918.483.1 ID=mRNA_Ecto-sp8_S_contig102918.483.1|Name=mRNA_Ecto-sp8_S_contig102918.483.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102918:2..529+ (Ectocarpus species8 EcLAC_412)
CTGCCGGACGAGTACGCCTCCGTCGCGCACGCCGGGGCGGCGGCCGGCGC
GGACCTCTCCCAGAGCGTCGTCCGAGTGCCCTTCGAGGTCATCAAGCAGC
GGGTGCAGGCGGGCGTGGACGCCTCCGGGAGAGCCGCCCTCGCCAGCGTC
ATGAAGTCGCAGGGGCCCAGGGGCCTCTACCGGGGCTGGGGCGCGCTGGC
CCTGCGAGACCTTCCCTTCGACATCATCGAGTTCCCGCTCTACGAGTGGC
TCAAGAGCGAGTGGACCAAGGTCAAGGGGGAGAAGCTGGCGCCCTGGCAG
GGCTCCCTGTGCGGGTCGGTCGCGGGGGGCATCGCTGCCGGGCTCACGAC
CCCGCTCGACGTCGTCAAGACGCGGCTCATGACCCAGAGCCCCGGGCAGT
ACGCCGGCATTGGCGGGTGCTTGAGATCAATCCTGAAGGAGGAGGGGGCG
GGGGCGCTGTTCGCCGGGTCGGTGCCGAGGATGACGTCCATCGCCTTCGG
CGGCGCCATCTTCTTCGGCGCGTACGAG
back to top