mRNA_Ecto-sp8_S_contig10285.474.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10285.474.1
Unique NamemRNA_Ecto-sp8_S_contig10285.474.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10285.474.1 vs. uniprot
Match: D7FNN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN6_ECTSI)

HSP 1 Score: 618 bits (1593), Expect = 1.980e-221
Identity = 338/355 (95.21%), Postives = 338/355 (95.21%), Query Frame = 1 
Query:    1 MRRCRELGHLRRWSSIVVPKSAGRTYSEYAPAAPSPNDLKAPLPEKFSVGKNLKLKAVLFQYDLLAGSNHERKSITASSSPSSSSSI---PGAPASPSTSFDPLTPSGENLVDEITGVLGKGRGDRLQELGRALIADLKDKMGASVASSSAPTPPAKQQREQRPTVSQDSDPKAKYMEKLRKKTGAGSTSASRAATAGSQPGGDADLFAARNLVSSTEAAKLQSAWMLRQGAGDLLTYLAARSWRLGVIAGPQTSPREFESFVRQLRQQSIRVTTAVSPEDLELDGVEAGVVRASRELGMGEGARGGADVLLVGSSNPLLSAATEAKMFTARYYPPNSRREGVIQTFVVRDIDEV 1056
            MRRCRELGHLRRWSSIVVPKSAGRTYSEYAPAAPSPNDLKAPLPEKFSVGKNLKLKAVLFQYDLLAGSNHERKSITASSSPS        PGAPASPSTSFDPLTPSGENLVDEITGVLGKGRGDRLQELGRALIADLKDKMGASV SSSAPTPPAKQQREQRP VSQDSDPKAKYMEKLRKKTGAGS SAS AATAGSQPGGDADLFAARNLVSSTEAA L SAWMLRQGAGDLLTYLAARS RLGVIAGPQTSPREFESFVRQLRQQSIRVTTAVSPEDLELDGVEAGVVRASRELGMGEG RGGADVLLVGSSNPLLSAATEA MFTARYYPPNSRREGVIQTFVVRDIDEV
Sbjct:    1 MRRCRELGHLRRWSSIVVPKSAGRTYSEYAPAAPSPNDLKAPLPEKFSVGKNLKLKAVLFQYDLLAGSNHERKSITASSSPSXXXXXXXXPGAPASPSTSFDPLTPSGENLVDEITGVLGKGRGDRLQELGRALIADLKDKMGASVTSSSAPTPPAKQQREQRPRVSQDSDPKAKYMEKLRKKTGAGSISASPAATAGSQPGGDADLFAARNLVSSTEAANLHSAWMLRQGAGDLLTYLAARSLRLGVIAGPQTSPREFESFVRQLRQQSIRVTTAVSPEDLELDGVEAGVVRASRELGMGEGRRGGADVLLVGSSNPLLSAATEANMFTARYYPPNSRREGVIQTFVVRDIDEV 355
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10285.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN6_ECTSI1.980e-22195.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10285contigEcto-sp8_S_contig10285:505..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1131
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_004840.1
Cds size1131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.5297995-CDS-Ecto-sp8_S_contig10285:504..6721681143127.5297995-CDS-Ecto-sp8_S_contig10285:504..672Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10285 505..672 +
1681143127.5461116-CDS-Ecto-sp8_S_contig10285:990..13501681143127.5461116-CDS-Ecto-sp8_S_contig10285:990..1350Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10285 991..1350 +
1681143127.555985-CDS-Ecto-sp8_S_contig10285:1702..23051681143127.555985-CDS-Ecto-sp8_S_contig10285:1702..2305Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10285 1703..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10285.474.1prot_Ecto-sp8_S_contig10285.474.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10285 505..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10285.474.1

>prot_Ecto-sp8_S_contig10285.474.1 ID=prot_Ecto-sp8_S_contig10285.474.1|Name=mRNA_Ecto-sp8_S_contig10285.474.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=377bp
MRRCRELGHLRRWSSIVVPKSAGRTYSEYAPAAPSPNDLKAPLPEKFSVG
KNLKLKAVLFQYDLLAGSNHERKSITASSSPSSSSSIPGAPASPSTSFDP
LTPSGENLVDEITGVLGKGRGDRLQELGRALIADLKDKMGASVASSSAPT
PPAKQQREQRPTVSQDSDPKAKYMEKLRKKTGAGSTSASRAATAGSQPGG
DADLFAARNLVSSTEAAKLQSAWMLRQGAGDLLTYLAARSWRLGVIAGPQ
TSPREFESFVRQLRQQSIRVTTAVSPEDLELDGVEAGVVRASRELGMGEG
ARGGADVLLVGSSNPLLSAATEAKMFTARYYPPNSRREGVIQTFVVRDID
EVGGSGPTDEQQYIAGGDDVLSCPET*
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mRNA from alignment at Ecto-sp8_S_contig10285:505..2305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10285.474.1 ID=mRNA_Ecto-sp8_S_contig10285.474.1|Name=mRNA_Ecto-sp8_S_contig10285.474.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1801bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10285:505..2305+ (Ectocarpus species8 EcLAC_412)
ATGCGACGATGTCGTGAACTCGGCCATTTGAGGAGATGGTCTTCGATCGT
TGTTCCTAAATCAGCAGGCAGGACCTACTCCGAGTATGCCCCGGCGGCAC
CTTCTCCCAACGACCTGAAGGCTCCCTTGCCCGAGAAGTTTTCTGTGGGG
AAGAATCTGAAGCTCAAGGTGGAACATGAGTGTTACTCGTAGTCACGTGC
TTCGGCGTTGATTCGATCGTAAATACTACGTAGGCTTGCGTCGACGGTAT
GGTCGGCGTTGTGACGGCTAGCACACCGCCATTGTACAGCAAGCGTGACC
GCCGCAGGCACAGCAATAGTGTAGCCAACAATTCTAGTGGATAGCTGTAG
AGTCTCTACCACTTCATTTTGTAGCACACAATACAGAAACGCGCTTAGTA
GAGCGGAAACTACGTCTACCTTCACCTTTCCCCCGTATCGTCGGCCCTCG
CGCGCGTGATGGTCTTCCTATTTTACGCCAATGAAGGCCGTGCTGTTCCA
GTACGATCTCCTGGCGGGATCAAATCATGAACGAAAGAGTATCACCGCGA
GCTCATCCCCTAGCAGCAGCAGCAGCATCCCAGGTGCACCTGCGTCGCCC
TCCACCAGTTTTGACCCCTTGACTCCGTCCGGAGAAAACCTTGTAGACGA
AATTACGGGCGTCCTGGGCAAGGGAAGAGGGGACAGATTGCAAGAGCTGG
GGCGGGCGTTGATAGCCGACCTGAAGGACAAGATGGGAGCTTCTGTGGCT
TCGTCTTCTGCACCGACTCCGCCCGCTAAGCAACAAAGAGAGCAACGACC
GACAGTTTCCCAGGACTCAGATCCCAAAGCAAAGTACATGGAGAAGGTGC
GACTTGGGTCAGCCATACACAAGACAGGGGGTCTCCACAACATGCAGCTC
GTACCCAACGGCAGCGCAACTACTGCCCTCGTGCGTAGCCAAAGGCATTT
TCTTTAGCACTCGCTCCCATTTCCCCCTGTGGTTCCTTTCCGCCTGACCT
TCTTTCCCGTCCCCCCACCTGTGCTCAACAAACCACCGTACACGGGTGTC
ACAGCTTCATGTGTTCGAGTGTTGTGACCTTGAGGGGGCACATATATCCA
ACAACGCGCCGCTCCATGCGCCTTCCGCCCCCGTCCGCCCCGTCCATGTT
ACAAAAAACTGAGCCTCAACAACAACTCTCTTCCGTTTGTTACGACAGCT
GCGGAAGAAAACCGGCGCAGGCAGTACTTCCGCCAGCCGCGCAGCCACCG
CCGGCTCTCAGCCCGGCGGCGATGCCGACCTCTTCGCAGCGAGAAATCTC
GTTTCAAGCACCGAGGCGGCAAAGTTACAATCGGCTTGGATGCTCAGACA
AGGCGCGGGGGACCTGCTCACGTACCTGGCGGCTCGGAGCTGGCGCCTTG
GCGTGATAGCGGGGCCGCAAACGAGCCCCCGAGAATTCGAGAGCTTCGTC
AGGCAGCTGCGGCAGCAGTCCATCCGGGTCACGACCGCCGTTTCACCGGA
GGACTTGGAGTTGGATGGCGTGGAGGCGGGCGTGGTCAGGGCAAGCAGAG
AGCTGGGCATGGGAGAAGGGGCAAGAGGAGGGGCGGACGTGTTGTTGGTG
GGGTCGAGCAACCCTCTGCTGAGCGCCGCTACCGAGGCGAAGATGTTCAC
CGCGAGGTATTACCCTCCGAACAGCCGGCGAGAAGGCGTGATCCAGACCT
TTGTTGTGCGAGATATCGACGAGGTAGGTGGGAGTGGGCCTACGGACGAG
CAGCAGTACATAGCAGGGGGTGATGACGTGTTGTCCTGTCCAGAAACTTA
G
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10285:505..2305+

>mRNA_Ecto-sp8_S_contig10285.474.1 ID=mRNA_Ecto-sp8_S_contig10285.474.1|Name=mRNA_Ecto-sp8_S_contig10285.474.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1131bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10285:505..2305+ (Ectocarpus species8 EcLAC_412)
ATGCGACGATGTCGTGAACTCGGCCATTTGAGGAGATGGTCTTCGATCGT
TGTTCCTAAATCAGCAGGCAGGACCTACTCCGAGTATGCCCCGGCGGCAC
CTTCTCCCAACGACCTGAAGGCTCCCTTGCCCGAGAAGTTTTCTGTGGGG
AAGAATCTGAAGCTCAAGGCCGTGCTGTTCCAGTACGATCTCCTGGCGGG
ATCAAATCATGAACGAAAGAGTATCACCGCGAGCTCATCCCCTAGCAGCA
GCAGCAGCATCCCAGGTGCACCTGCGTCGCCCTCCACCAGTTTTGACCCC
TTGACTCCGTCCGGAGAAAACCTTGTAGACGAAATTACGGGCGTCCTGGG
CAAGGGAAGAGGGGACAGATTGCAAGAGCTGGGGCGGGCGTTGATAGCCG
ACCTGAAGGACAAGATGGGAGCTTCTGTGGCTTCGTCTTCTGCACCGACT
CCGCCCGCTAAGCAACAAAGAGAGCAACGACCGACAGTTTCCCAGGACTC
AGATCCCAAAGCAAAGTACATGGAGAAGCTGCGGAAGAAAACCGGCGCAG
GCAGTACTTCCGCCAGCCGCGCAGCCACCGCCGGCTCTCAGCCCGGCGGC
GATGCCGACCTCTTCGCAGCGAGAAATCTCGTTTCAAGCACCGAGGCGGC
AAAGTTACAATCGGCTTGGATGCTCAGACAAGGCGCGGGGGACCTGCTCA
CGTACCTGGCGGCTCGGAGCTGGCGCCTTGGCGTGATAGCGGGGCCGCAA
ACGAGCCCCCGAGAATTCGAGAGCTTCGTCAGGCAGCTGCGGCAGCAGTC
CATCCGGGTCACGACCGCCGTTTCACCGGAGGACTTGGAGTTGGATGGCG
TGGAGGCGGGCGTGGTCAGGGCAAGCAGAGAGCTGGGCATGGGAGAAGGG
GCAAGAGGAGGGGCGGACGTGTTGTTGGTGGGGTCGAGCAACCCTCTGCT
GAGCGCCGCTACCGAGGCGAAGATGTTCACCGCGAGGTATTACCCTCCGA
ACAGCCGGCGAGAAGGCGTGATCCAGACCTTTGTTGTGCGAGATATCGAC
GAGGTAGGTGGGAGTGGGCCTACGGACGAGCAGCAGTACATAGCAGGGGG
TGATGACGTGTTGTCCTGTCCAGAAACTTAG
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