mRNA_Ecto-sp8_S_contig10284.473.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10284.473.1
Unique NamemRNA_Ecto-sp8_S_contig10284.473.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: D7G8X7_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8X7_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 2.020e-101
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFASP 426
            ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPF GGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFASP
Sbjct:    8 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFGGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFASP 148          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: A0A835Z9K8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K8_9STRA)

HSP 1 Score: 208 bits (530), Expect = 5.530e-67
Identity = 94/140 (67.14%), Postives = 119/140 (85.00%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            EL ELRK  L+WC   P+DD+IM W+AM+VGPD++P++GG F L+IE   EYPFKAPKV+F+TRIYHPN++T+ GEIC+DILN+NWGPTLN+++VLNT+RQML EP A++PLE DIARQLAEDK  F +TA K+T DFAS
Sbjct:    8 ELTELRKAPLDWCQCGPVDDNIMHWSAMMVGPDNSPYAGGVFQLDIEMSPEYPFKAPKVKFLTRIYHPNIRTEGGEICADILNDNWGPTLNLSHVLNTLRQMLLEPSAESPLEPDIARQLAEDKAQFLKTAAKYTADFAS 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: A0A6V1MVK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MVK4_HETAK)

HSP 1 Score: 206 bits (523), Expect = 6.440e-66
Identity = 93/140 (66.43%), Postives = 115/140 (82.14%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            EL  L K  L++    P  DDIM+W AMLVGP +TP+ GG FNLE++FPAEYPFKAPKV+F+TRIYHPN+KTDSGEIC+D++NENWGPTLN  YVL  I+Q+L+EP AD+PLEADI RQL ED++AF +TA KWT D+A+
Sbjct:    8 ELQALEKAPLDFVTAGPAGDDIMKWQAMLVGPANTPYEGGVFNLELDFPAEYPFKAPKVKFLTRIYHPNIKTDSGEICADLINENWGPTLNTQYVLTVIKQLLEEPSADSPLEADIGRQLTEDENAFKETAAKWTADYAT 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: A0A024U3D9_9STRA (UBC core domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U3D9_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.510e-64
Identity = 86/140 (61.43%), Postives = 116/140 (82.86%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            ELAE  KN  EWC + P+DDD++ W AM+VGP++TP++GG F++++ FPAEYPFKAPKV+F+TR+YHPNVK+ SGEIC+DI+NE+WGPTLNV + L  ++QML++P ADNPLE +IA+ L  ++D F  TA+KWT DFAS
Sbjct:    8 ELAEFNKNSPEWCTVGPVDDDLLHWNAMVVGPENTPYAGGVFSIDLVFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADIINESWGPTLNVLHCLTALKQMLEQPDADNPLEPEIAKLLHGNRDVFNDTARKWTKDFAS 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: G4YF85_PHYSP (UBC core domain-containing protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=G4YF85_PHYSP)

HSP 1 Score: 202 bits (514), Expect = 1.510e-64
Identity = 87/140 (62.14%), Postives = 115/140 (82.14%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            ELAE  KN  EWC +  +DDD+M W AML GP+D+P+SGG FNL+++FP+EYPFKAPKVRF+TR+YHPNVK+ SGEIC+DI+NENWGPTLNV + L  I+Q+L++P  DNPLE +IA+Q+ E+K  F +TA++WT  +AS
Sbjct:    8 ELAEFEKNSPEWCTVSAVDDDLMHWNAMLAGPEDSPYSGGVFNLDLQFPSEYPFKAPKVRFLTRVYHPNVKSQSGEICADIINENWGPTLNVLHCLTAIKQILEQPDMDNPLEPEIAKQMHENKADFEKTAQEWTKQYAS 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: A0A067CHA9_SAPPC (UBC core domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA9_SAPPC)

HSP 1 Score: 202 bits (514), Expect = 1.510e-64
Identity = 85/140 (60.71%), Postives = 117/140 (83.57%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            ELAE  KN  +WC +  +DDD++ W AM+VGPD++P++GG F++++ FPAEYPFKAPKV+F+TR+YHPNVK+ SGEIC+D++NENWGPTLNV + L  ++Q+L++P  DNPLE +IA+QL  ++DAF +TAKKWT DFAS
Sbjct:    8 ELAEFNKNSPDWCTVGTVDDDLLHWNAMVVGPDNSPYAGGVFSIDLLFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADVINENWGPTLNVMFCLTALKQILEQPDGDNPLEPEIAKQLQCNRDAFNETAKKWTKDFAS 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: A0A2D4CAW9_PYTIN (UBC core domain-containing protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CAW9_PYTIN)

HSP 1 Score: 200 bits (508), Expect = 1.240e-63
Identity = 84/140 (60.00%), Postives = 114/140 (81.43%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            ELAE  KN  +WC +  +DDD+M W AM+ GP+D+P+SGG F+L+++FP EYPFKAPK+RF+T++YHPN+KT SGEIC+DI+NENW PTLNV + L  I+Q+L++P  DNPLE +IARQL  DK+AF QTA++WT  +A+
Sbjct:    8 ELAEFEKNSPDWCTVGSVDDDLMHWNAMVAGPEDSPYSGGVFSLDLQFPNEYPFKAPKIRFLTKVYHPNIKTSSGEICADIINENWAPTLNVLHCLQAIKQILEQPDVDNPLEPEIARQLQSDKEAFHQTAQEWTKQYAT 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: A0A835YRR6_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR6_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.760e-63
Identity = 90/140 (64.29%), Postives = 114/140 (81.43%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            ELAEL+++ L+WC  +P +DDI++WTA +VGPD TP+ GG FN+ +EFPAEYPFKAPKV+F TRIYHP+V+T +GEIC+D+L  NWGPTLNVT+VLNTIRQML EP  ++PLE +I R L EDK AF + A K T +FAS
Sbjct:    8 ELAELKRSPLDWCTCEPQEDDILQWTATIVGPDGTPYEGGIFNISLEFPAEYPFKAPKVKFQTRIYHPHVRTATGEICADVLLNNWGPTLNVTFVLNTIRQMLIEPSTESPLEPEIGRLLIEDKQAFIKNAAKCTAEFAS 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: K3W7Y2_GLOUD (UBC core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7Y2_GLOUD)

HSP 1 Score: 196 bits (498), Expect = 4.130e-62
Identity = 83/140 (59.29%), Postives = 113/140 (80.71%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            ELAE  KN  EWC +  +DDD+M W AML GP+++P+SGG F+++++FP EYPFKAP+VRF+TR+YHPNVK+ SGEIC+DI+NENWGPTLNV + L  I+Q+L++P  DNPLE +IA+QL  +++ F  TAK+WT  +AS
Sbjct:    8 ELAEFEKNSPEWCTVGAVDDDLMHWNAMLAGPENSPYSGGVFSIDLQFPNEYPFKAPRVRFLTRVYHPNVKSQSGEICADIINENWGPTLNVLHCLTAIKQILEQPDVDNPLEPEIAKQLQSNREEFDNTAKEWTKQYAS 147          
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Match: A0A397DVW9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DVW9_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.030e-60
Identity = 87/140 (62.14%), Postives = 116/140 (82.86%), Query Frame = 1
Query:    4 ELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFPAEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTIRQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFAS 423
            ELAE  KN  EWC + P+DDD++ W AM+VGP++TP++GG F++++ FPAEYPFKAPKV+F+TR+YHPNVK+ SGEIC+DI+NE+WGPTLNV + L  ++QML++P ADNPLE +IA+QL   +D F  TA+KWT DFAS
Sbjct:    8 ELAEFNKNSPEWCTVGPVDDDLLHWNAMVVGPENTPYAGGVFSIDLVFPAEYPFKAPKVKFLTRVYHPNVKSQSGEICADIINESWGPTLNVLHCLTALKQMLEQPDADNPLEPEIAKQLHGSRDVFNDTARKWTKDFAS 147          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10284.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8X7_ECTSI2.020e-10199.29UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z9K8_9STRA5.530e-6767.14Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A6V1MVK4_HETAK6.440e-6666.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024U3D9_9STRA1.510e-6461.43UBC core domain-containing protein n=4 Tax=Aphanom... [more]
G4YF85_PHYSP1.510e-6462.14UBC core domain-containing protein n=17 Tax=Perono... [more]
A0A067CHA9_SAPPC1.510e-6460.71UBC core domain-containing protein n=4 Tax=Saprole... [more]
A0A2D4CAW9_PYTIN1.240e-6360.00UBC core domain-containing protein n=2 Tax=Pythium... [more]
A0A835YRR6_9STRA1.760e-6364.29Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
K3W7Y2_GLOUD4.130e-6259.29UBC core domain-containing protein n=1 Tax=Globisp... [more]
A0A397DVW9_9STRA3.030e-6062.14Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10284contigEcto-sp8_S_contig10284:174..2780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score299.3
Seed ortholog evalue9.7e-79
Seed eggNOG ortholog2880.D7G8X7
Preferred nameubcB
Model size429
KEGG koko:K13280
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009653,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0048856,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons4
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-15_004630.1
EC3.4.21.89
Cds size429
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.412194-CDS-Ecto-sp8_S_contig10284:173..2721681143127.412194-CDS-Ecto-sp8_S_contig10284:173..272Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10284 174..272 +
1681143127.4331105-CDS-Ecto-sp8_S_contig10284:1167..12451681143127.4331105-CDS-Ecto-sp8_S_contig10284:1167..1245Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10284 1168..1245 +
1681143127.4489825-CDS-Ecto-sp8_S_contig10284:1855..19841681143127.4489825-CDS-Ecto-sp8_S_contig10284:1855..1984Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10284 1856..1984 +
1681143127.457638-CDS-Ecto-sp8_S_contig10284:2657..27801681143127.457638-CDS-Ecto-sp8_S_contig10284:2657..2780Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10284 2658..2780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10284.473.1prot_Ecto-sp8_S_contig10284.473.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10284 174..2780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10284.473.1

>prot_Ecto-sp8_S_contig10284.473.1 ID=prot_Ecto-sp8_S_contig10284.473.1|Name=mRNA_Ecto-sp8_S_contig10284.473.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=143bp
QELAELRKNKLEWCDIQPMDDDIMRWTAMLVGPDDTPFSGGCFNLEIEFP
AEYPFKAPKVRFVTRIYHPNVKTDSGEICSDILNENWGPTLNVTYVLNTI
RQMLQEPHADNPLEADIARQLAEDKDAFTQTAKKWTLDFASP*
back to top

mRNA from alignment at Ecto-sp8_S_contig10284:174..2780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10284.473.1 ID=mRNA_Ecto-sp8_S_contig10284.473.1|Name=mRNA_Ecto-sp8_S_contig10284.473.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2607bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10284:174..2780+ (Ectocarpus species8 EcLAC_412)
CAGGAGCTGGCGGAGCTCCGCAAGAACAAATTGGAGTGGTGTGACATCCA GCCCATGGATGACGACATCATGCGGTGGACAGCCATGTTGGTTGGACCGG TAAGCCTTGCCTCGCGTGCGTACATGTGTGACTCGCCAATAGGTTGTCGT TATTCGTGTTGTTGTTGTTGTTGTTGTTGTTGTCTGGCTCTATCGCCGTT GCGTTTGTGCTGTAGTTTTCCGGTCCTGTTTGTTATTGCTGCTAGCTTGG TTTGGTTGTTGTTGTTGTCGTTGTCGTTGTCGTTGTTGTTGTTATTGTTG TTGTTGCCTTTACCGTGAAGAAAGCGATTCTGATCTCTAACGAGTAACGC CAAACTAACGAGTAAGAACGTCCAAGATGTTCGTGCTGATCTGTACGACA GAGCACCGTATTTCCCCATGATTTGAAGACGAGTTAACCGAGTACAAGCT TTCATCTTCAGCCGTCGGGGCGGTTTTAACAGACCTAGTATACAGTGATG GAACCAAAAAAAAAGAAAAAAACGCCTACCTGATACCTGATACACGAAAA CGGGCGATGCCTCCTACGATACGGCGACGGCTTCCACGGTACGGCCGCCG AAGGCGTTGCATATGGCTTGCGAGAGGCGTTTATCCCCGAATTTGTGACA CTTGTTGCGGCGGCCGCTTTACCCGACTCTCCAAGGAAAGAAAACACGAC AAGACTGTTACACGCAGGGGAGATGTCAATATATGCTGTCTGGGAAATCG TTGACATACAGGTAGCCTTCTCTGACGCTATGAATTCATTGCTAATCTGT CTCTGACTCTTTTCTGTGATAGAGATGGATTCGTTGTGTCATATTAAGAA AAATAAAAAAACACGACAGTCCTAGCGCCTGTTACTTTGCATGACGCCGA AAAGACGCAAAGAGGCACGTTTCTGACCGCGCGCGCGCGTGTGTGTGCGT TGGTATCGTTTTTGGGCGTGTGTGTGCGGTGTCGTGTAATAAAGGATGAC ACGCCCTTCAGCGGAGGTTGCTTTAACCTGGAGATCGAGTTCCCGGCAGA GTACCCTTTCAAGGCACCCAAGGTAAGGAGAGGAACGCCTTTTCTAATGA AACCCCTTGTTTTGTGTCATTGTTTACCCTTTCGCGGCATCAAGGGTAAG GAAAGGAACGCTTGATTGCATTGCATACCATTGTGTACGCTTTCGAAGCA CCCTAGGTTAGGAAATAAATGTCTTCTTTGACGTCGATGTGTACCCTTTC AAGGCACCAAGGGTAAGGAAAGGAACGCTTTATTGCATACCATTGTGTAC GCTTTCGAAGCACCCTAGGTTAGGACATAAACGTCTTCTTTGACGTCGAT GTGTACCCTTTCAAGGCACTAAGGGTAAGGAAAGGAACGCTTTATTGCAT ACCTTTGTGTACGCTTTCGAAGCACCCGAGGTTAGGAAATGAACGTCTTC TTTGATGTCTATGTGTACCCTTTCAAGGCACCCAAGGTGAGCAACGCCTT ATTTAATGGAGCGCCTTCTGATAAGATTGTCCTGCCTACATACAAGTACA GCAGTCGATATCTGCGTGTTGCTGCACGCGGGGCGGTGTCGTTAGGGGAG TTGTTCTCTTACGCGAATTACGGAGCCCCCACCCCCCCCTCCTCCTCCTC CTCCTCGTGTGCTTGGGAAAATCCAACCGCAGGTGAGGTTTGTGACGCGC ATCTACCACCCCAACGTCAAGACAGACTCGGGGGAGATCTGCTCGGACAT CCTCAACGAGAACTGGGGGCCGACGCTCAATGTCACCTACGTGCTCAACA CCATCCGCCAGGTACGTGGTATCGATTGTGCCGAGTCAACTACGTACATA TCTCCCCTCTACATAACTAGGTACCTGGTTGTTCCACCACGTAGATCGGG CTTGAGCGTCGGAAAGCAGTCAAGTGGGTCGAAGCTGCCCTCGATACATG GGAAGCGCGATAACGCCTCTCTCTCTGTTGGAACACTGCCACGGTCGGCG GTGTGATGGCGCCTCCCTTGAAACATTGCAACGACTGGGGTCATGACAAC GCCTCCCTTGGTACCTACTTCCATGGTTGGCGTCATGATATGACCTTAAC TGCAAGGTTGGCGGTATGGCAAGGCCCGTGTTGGAACGCTGAACACGTGT AGCGGCGGTACGTATCTTCGCCCTTGGTACGGTTGATGCGCCACGGGGAT CGGTCAGACGCTTTGATGTGCACGGCGGTTGTGCTTGCTCAGGAGGGATA CCAGCGCCTCATGACTTCGGCCGTTCACGATGAGGGTTATCCCCGCTCTC TCTCTGTCCGCTTTATTTTCCCTCATCGTGAACTTGTTTTTCTGTCCGCT TTATTTTCCGCGTGTGAGGAGCTAGCGCGCAACCGGACCGTTGAGTCTGC CCCACCATCTTGACCAACACCCCTCATGTCTGTTGTTGCTCTTTTCTGCG TTGTTTCCTCAAACATCACTGTCAACATCGGTAGATGTTGCAGGAGCCTC ACGCGGACAACCCTCTGGAGGCGGACATCGCGAGGCAGCTCGCGGAGGAC AAGGACGCCTTCACGCAGACGGCAAAAAAGTGGACCCTCGACTTCGCCAG TCCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10284:174..2780+

>mRNA_Ecto-sp8_S_contig10284.473.1 ID=mRNA_Ecto-sp8_S_contig10284.473.1|Name=mRNA_Ecto-sp8_S_contig10284.473.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10284:174..2780+ (Ectocarpus species8 EcLAC_412)
CAGGAGCTGGCGGAGCTCCGCAAGAACAAATTGGAGTGGTGTGACATCCA
GCCCATGGATGACGACATCATGCGGTGGACAGCCATGTTGGTTGGACCGG
ATGACACGCCCTTCAGCGGAGGTTGCTTTAACCTGGAGATCGAGTTCCCG
GCAGAGTACCCTTTCAAGGCACCCAAGGTGAGGTTTGTGACGCGCATCTA
CCACCCCAACGTCAAGACAGACTCGGGGGAGATCTGCTCGGACATCCTCA
ACGAGAACTGGGGGCCGACGCTCAATGTCACCTACGTGCTCAACACCATC
CGCCAGATGTTGCAGGAGCCTCACGCGGACAACCCTCTGGAGGCGGACAT
CGCGAGGCAGCTCGCGGAGGACAAGGACGCCTTCACGCAGACGGCAAAAA
AGTGGACCCTCGACTTCGCCAGTCCGTGA
back to top