mRNA_Ecto-sp8_S_contig102834.472.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102834.472.1
Unique NamemRNA_Ecto-sp8_S_contig102834.472.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102834.472.1 vs. uniprot
Match: Q8QNE2_ESV1K (EsV-1-137 n=2 Tax=root TaxID=1 RepID=Q8QNE2_ESV1K)

HSP 1 Score: 269 bits (687), Expect = 5.920e-91
Identity = 133/143 (93.01%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:    1 MASSLEKQVHVEEHIPERCAEQWDYQFPVVNQQHCLMSIVDCEDPQKPAAIKVFGCYPSVDSANAAAAKISSECDFFHVYVCPTNAWVPVPPSPEFIENVHYQESRMREIQETFAALKDRKAQDVIRHLNKESGVPEEEKNGL 429
            MASSLEKQVHVEEHIPERCAEQWDYQF VVNQQHCLMSIVDCEDPQKPAAIKVFGCYPSVD+ANAAAAKISSECDFFHVYVCPTNAWVPVPPSP+FIENV YQESRM+EIQETFAALKDRKAQDVIRHLNKES VP+ + NGL
Sbjct:    1 MASSLEKQVHVEEHIPERCAEQWDYQFSVVNQQHCLMSIVDCEDPQKPAAIKVFGCYPSVDAANAAAAKISSECDFFHVYVCPTNAWVPVPPSPDFIENVQYQESRMKEIQETFAALKDRKAQDVIRHLNKESEVPDAQ-NGL 142
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BLAST of mRNA_Ecto-sp8_S_contig102834.472.1 vs. uniprot
Match: Q6XLT3_9PHYC (FirrV-1-O1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT3_9PHYC)

HSP 1 Score: 122 bits (306), Expect = 4.590e-33
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:   28 HVEEHIPERCAEQWDYQFPVVNQQHCLMSIVDCEDPQK-PAAIKVFGCYPSVDSANAAAAKISSECDFFHVYVCPTNAWVPVPPSPEFIENVHYQESRMREIQETFAALKDRKAQDVIRHLNKESGV 405
            H+E  I +R  E W YQ+ V +Q   L+SI D E     P+AIKVFG Y ++D AN AA  IS+E DFF VYV  TNAW+P+PPS +FIE+V YQE R+++I++TF  +KDR A  + R + K  G+
Sbjct:    8 HIESDIAQRSDEAWGYQYHVRDQNFVLLSICDNESSSDCPSAIKVFGTYRTLDEANRAAGVISNENDFFDVYVADTNAWLPIPPSSKFIEDVRYQEERLKDIKDTFTKMKDRNANQMRRQITKSDGL 134
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BLAST of mRNA_Ecto-sp8_S_contig102834.472.1 vs. uniprot
Match: B5LWJ0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ0_9PHYC)

HSP 1 Score: 121 bits (303), Expect = 1.650e-32
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1 
Query:   16 EKQVHVEEHIPERCAEQWDYQFPVVNQQHCLMSIVDCEDPQKPAAIKVFGCYPSVDSANAAAAKISSECDFFHVYVCPTNAWVPVPPSPEFIENVHYQESRMREIQETFAALKDRKAQDVIRHL 387
            E   HVE+ I ER  + W YQ+ V +Q + ++ I  CE+   P+A+K+FG Y +++ AN AA KIS+E DFF VYV  TNAWVP+PPS EF+E V YQE RM EI++TF  +K R A  + R +
Sbjct:    4 ESYTHVEQDIQERSDDAWSYQYTVPHQNYVVLFI--CENSPGPSAVKIFGAYRTLEDANRAADKISNEMDFFDVYVADTNAWVPIPPSQEFVEEVEYQEKRMSEIKDTFIKMKQRDAAQMRRRI 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102834.472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNE2_ESV1K5.920e-9193.01EsV-1-137 n=2 Tax=root TaxID=1 RepID=Q8QNE2_ESV1K[more]
Q6XLT3_9PHYC4.590e-3349.61FirrV-1-O1 n=1 Tax=Feldmannia irregularis virus a ... [more]
B5LWJ0_9PHYC1.650e-3249.19Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102834contigEcto-sp8_S_contig102834:99..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.3750923-CDS-Ecto-sp8_S_contig102834:98..5301681143127.3750923-CDS-Ecto-sp8_S_contig102834:98..530Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102834 99..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102834.472.1prot_Ecto-sp8_S_contig102834.472.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102834 99..530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102834.472.1

>prot_Ecto-sp8_S_contig102834.472.1 ID=prot_Ecto-sp8_S_contig102834.472.1|Name=mRNA_Ecto-sp8_S_contig102834.472.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
MASSLEKQVHVEEHIPERCAEQWDYQFPVVNQQHCLMSIVDCEDPQKPAA
IKVFGCYPSVDSANAAAAKISSECDFFHVYVCPTNAWVPVPPSPEFIENV
HYQESRMREIQETFAALKDRKAQDVIRHLNKESGVPEEEKNGLE
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mRNA from alignment at Ecto-sp8_S_contig102834:99..530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102834.472.1 ID=mRNA_Ecto-sp8_S_contig102834.472.1|Name=mRNA_Ecto-sp8_S_contig102834.472.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102834:99..530+ (Ectocarpus species8 EcLAC_412)
ATGGCGTCCTCTCTCGAGAAACAGGTCCATGTAGAGGAGCACATCCCGGA
GCGCTGTGCGGAACAGTGGGACTACCAATTCCCCGTTGTAAACCAACAGC
ATTGCCTGATGTCCATCGTGGACTGCGAGGATCCACAGAAGCCCGCCGCC
ATCAAAGTCTTCGGGTGCTACCCCTCTGTCGACTCGGCAAACGCGGCGGC
GGCCAAGATAAGCTCCGAGTGCGACTTCTTCCACGTGTACGTTTGCCCCA
CCAATGCCTGGGTGCCCGTCCCTCCCTCCCCCGAGTTCATAGAGAACGTA
CACTATCAAGAGTCCAGGATGAGAGAAATTCAGGAAACTTTCGCGGCTCT
GAAGGACCGCAAAGCCCAGGACGTCATCCGTCACCTCAACAAGGAGTCGG
GAGTTCCGGAAGAGGAGAAGAATGGGTTAGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102834:99..530+

>mRNA_Ecto-sp8_S_contig102834.472.1 ID=mRNA_Ecto-sp8_S_contig102834.472.1|Name=mRNA_Ecto-sp8_S_contig102834.472.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102834:99..530+ (Ectocarpus species8 EcLAC_412)
ATGGCGTCCTCTCTCGAGAAACAGGTCCATGTAGAGGAGCACATCCCGGA
GCGCTGTGCGGAACAGTGGGACTACCAATTCCCCGTTGTAAACCAACAGC
ATTGCCTGATGTCCATCGTGGACTGCGAGGATCCACAGAAGCCCGCCGCC
ATCAAAGTCTTCGGGTGCTACCCCTCTGTCGACTCGGCAAACGCGGCGGC
GGCCAAGATAAGCTCCGAGTGCGACTTCTTCCACGTGTACGTTTGCCCCA
CCAATGCCTGGGTGCCCGTCCCTCCCTCCCCCGAGTTCATAGAGAACGTA
CACTATCAAGAGTCCAGGATGAGAGAAATTCAGGAAACTTTCGCGGCTCT
GAAGGACCGCAAAGCCCAGGACGTCATCCGTCACCTCAACAAGGAGTCGG
GAGTTCCGGAAGAGGAGAAGAATGGGTTAGAG
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