mRNA_Ecto-sp8_S_contig10283.470.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10283.470.1
Unique NamemRNA_Ecto-sp8_S_contig10283.470.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10283.470.1 vs. uniprot
Match: A0A6H5KYK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.100e-63
Identity = 110/122 (90.16%), Postives = 112/122 (91.80%), Query Frame = 1 
Query:    1 AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLGGGVPGPHAYKHTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPT 366
            AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGL     G    + TTLDWVHGLQPDDLEKFLAEKK+QRMRVLCLDLEPT
Sbjct: 1781 AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLNSQTLGADG-QSTTLDWVHGLQPDDLEKFLAEKKEQRMRVLCLDLEPT 1901
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BLAST of mRNA_Ecto-sp8_S_contig10283.470.1 vs. uniprot
Match: D8LG77_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG77_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 2.420e-62
Identity = 109/122 (89.34%), Postives = 110/122 (90.16%), Query Frame = 1 
Query:    1 AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKCPQWHEGNVQLMGVYLAITFLEYGLGGGVPGPHAYKHTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPT 366
            AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIR KCPQWHEGNVQLMGV LAITFLEYG      G  A + TTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPT
Sbjct: 1280 AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRGKCPQWHEGNVQLMGVSLAITFLEYGFNSQTLGVDA-QSTTLDWVHGLQPDDLEKFLAEKKDQRMRVLCLDLEPT 1400
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10283.470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYK9_9PHAE1.100e-6390.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG77_ECTSI2.420e-6289.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10283contigEcto-sp8_S_contig10283:3..648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score215.7
Seed ortholog evalue1.2e-53
Seed eggNOG ortholog2880.D8LG77
Model size366
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2D0P0@1,2SEV1@2759
Cds size366
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.3085594-CDS-Ecto-sp8_S_contig10283:2..1111681143127.3085594-CDS-Ecto-sp8_S_contig10283:2..111Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10283 3..111 -
1681143127.3239193-CDS-Ecto-sp8_S_contig10283:288..2981681143127.3239193-CDS-Ecto-sp8_S_contig10283:288..298Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10283 289..298 -
1681143127.33686-CDS-Ecto-sp8_S_contig10283:401..6481681143127.33686-CDS-Ecto-sp8_S_contig10283:401..648Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10283 402..648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10283.470.1prot_Ecto-sp8_S_contig10283.470.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10283 3..648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10283.470.1

>prot_Ecto-sp8_S_contig10283.470.1 ID=prot_Ecto-sp8_S_contig10283.470.1|Name=mRNA_Ecto-sp8_S_contig10283.470.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=122bp
AATDSLSRYDQIIVTARIVLMFDGSSGQSAAIREAVPLFQQVYKIIRAKC
PQWHEGNVQLMGVYLAITFLEYGLGGGVPGPHAYKHTTLDWVHGLQPDDL
EKFLAEKKDQRMRVLCLDLEPT
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mRNA from alignment at Ecto-sp8_S_contig10283:3..648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10283.470.1 ID=mRNA_Ecto-sp8_S_contig10283.470.1|Name=mRNA_Ecto-sp8_S_contig10283.470.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=646bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10283:3..648- (Ectocarpus species8 EcLAC_412)
GCTGCAACCGACTCCCTGTCGAGGTACGACCAGATCATCGTGACGGCGCG
AATCGTGCTCATGTTCGACGGAAGCAGCGGGCAGTCGGCGGCCATCCGCG
AGGCCGTTCCCCTGTTCCAGCAGGTGTACAAGATCATCCGGGCGAAGTGC
CCGCAGTGGCATGAGGGGAACGTGCAGCTGATGGGGGTGTACCTGGCCAT
CACGTTCCTCGAGTACGGGCTCGGGGGGGGGGTCCCGGGCCCACACGGTC
CGCGAGGGGGGGTGCGAGGCGGAGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGAGTGGGTTGTCATGTGGACCCCTCTGGGACCGGAAG
CATACAAGCAGTGTACAGTGTTATAGCAGTGTTTCGCTCGCCCCTCTAAC
ATTGCGACACCGGGATGAATGCAAATGTATCAATTGGCCGGAATATTATA
TCGAACCCTCATTCATCGCTGAACGTGGCCGGCCGATCTGATGTTTGATG
TGTCGTGCTTGCTCTCGTTGAAAATGTACGAAATCAGCACAACCCTGGAC
TGGGTCCACGGGCTTCAGCCGGACGACCTGGAGAAGTTCTTGGCCGAGAA
GAAGGACCAGCGCATGAGAGTCCTGTGTCTCGACCTCGAGCCCACT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10283:3..648-

>mRNA_Ecto-sp8_S_contig10283.470.1 ID=mRNA_Ecto-sp8_S_contig10283.470.1|Name=mRNA_Ecto-sp8_S_contig10283.470.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10283:3..648- (Ectocarpus species8 EcLAC_412)
GCTGCAACCGACTCCCTGTCGAGGTACGACCAGATCATCGTGACGGCGCG
AATCGTGCTCATGTTCGACGGAAGCAGCGGGCAGTCGGCGGCCATCCGCG
AGGCCGTTCCCCTGTTCCAGCAGGTGTACAAGATCATCCGGGCGAAGTGC
CCGCAGTGGCATGAGGGGAACGTGCAGCTGATGGGGGTGTACCTGGCCAT
CACGTTCCTCGAGTACGGGCTCGGGGGGGGGGTCCCGGGCCCACACGCAT
ACAAGCACACAACCCTGGACTGGGTCCACGGGCTTCAGCCGGACGACCTG
GAGAAGTTCTTGGCCGAGAAGAAGGACCAGCGCATGAGAGTCCTGTGTCT
CGACCTCGAGCCCACT
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