mRNA_Ecto-sp8_S_contig102827.469.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102827.469.1
Unique NamemRNA_Ecto-sp8_S_contig102827.469.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102827.469.1 vs. uniprot
Match: D7FIZ9_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ9_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.880e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    7 FFSQVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPEV 114
            F  +VGDAKRAIKGLDDGIRGMKSGGTRRIVVPPE+
Sbjct:  157 FIYRVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPEL 192
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BLAST of mRNA_Ecto-sp8_S_contig102827.469.1 vs. uniprot
Match: A0A835YL48_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL48_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.440e-7
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    7 FFSQVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPEV 114
            F  +VGDA++AIKG D+GIRGMK GG RR++VPPE+
Sbjct:  271 FIYRVGDAQKAIKGFDEGIRGMKQGGKRRMIVPPEL 306
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BLAST of mRNA_Ecto-sp8_S_contig102827.469.1 vs. uniprot
Match: B8C0A9_THAPS (Peptidylprolyl isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0A9_THAPS)

HSP 1 Score: 49.3 bits (116), Expect = 1.070e-5
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 VAFFSQVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPEVS 117
            V F   VGD K AI GLD  +RGMK GGTRRI++PP+++
Sbjct:  177 VPFIFTVGDPKGAIAGLDQAVRGMKVGGTRRILIPPKLA 215
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BLAST of mRNA_Ecto-sp8_S_contig102827.469.1 vs. uniprot
Match: A0A1Z5K3Y4_FISSO (Peptidylprolyl isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3Y4_FISSO)

HSP 1 Score: 47.8 bits (112), Expect = 3.420e-5
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 VAFFSQVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPEVS 117
            V F  +VGD K AI+G+D+G+RGMK GG RRI++PP ++
Sbjct:  142 VPFIFEVGDGK-AIQGIDEGVRGMKVGGVRRILIPPSLA 179
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BLAST of mRNA_Ecto-sp8_S_contig102827.469.1 vs. uniprot
Match: A0A7S4J203_9STRA (Peptidylprolyl isomerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J203_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 3.580e-5
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 VAFFSQVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPEVS 117
            V F   VGD K A+ G+D+GIRGM+ GG RRI+VPP ++
Sbjct:  152 VPFIFTVGDPKGAMAGVDEGIRGMRVGGIRRIIVPPNLA 190
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BLAST of mRNA_Ecto-sp8_S_contig102827.469.1 vs. uniprot
Match: A0A7S2E2F1_9STRA (Peptidylprolyl isomerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E2F1_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 6.440e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 VAFFSQVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPE 111
            V F   VGD   AI G+D+GIRGMK GG RR+++PP+
Sbjct:   61 VPFIFTVGDKSGAIAGVDEGIRGMKVGGVRRLLIPPK 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102827.469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FIZ9_ECTSI6.880e-1288.89Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YL48_9STRA1.440e-766.67Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
B8C0A9_THAPS1.070e-558.97Peptidylprolyl isomerase n=1 Tax=Thalassiosira pse... [more]
A0A1Z5K3Y4_FISSO3.420e-556.41Peptidylprolyl isomerase n=1 Tax=Fistulifera solar... [more]
A0A7S4J203_9STRA3.580e-556.41Peptidylprolyl isomerase n=1 Tax=Odontella aurita ... [more]
A0A7S2E2F1_9STRA6.440e-556.76Peptidylprolyl isomerase n=1 Tax=Helicotheca tames... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102827contigEcto-sp8_S_contig102827:400..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.9
Seed ortholog evalue4.9e-09
Seed eggNOG ortholog2880.D7FIZ9
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
Cds size117
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143127.1374593-CDS-Ecto-sp8_S_contig102827:399..5161681143127.1374593-CDS-Ecto-sp8_S_contig102827:399..516Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102827 400..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102827.469.1prot_Ecto-sp8_S_contig102827.469.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102827 400..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102827.469.1

>prot_Ecto-sp8_S_contig102827.469.1 ID=prot_Ecto-sp8_S_contig102827.469.1|Name=mRNA_Ecto-sp8_S_contig102827.469.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=39bp
VAFFSQVGDAKRAIKGLDDGIRGMKSGGTRRIVVPPEVS
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mRNA from alignment at Ecto-sp8_S_contig102827:400..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102827.469.1 ID=mRNA_Ecto-sp8_S_contig102827.469.1|Name=mRNA_Ecto-sp8_S_contig102827.469.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102827:400..516+ (Ectocarpus species8 EcLAC_412)
GTTGCTTTTTTCTCCCAGGTGGGTGACGCGAAGCGAGCCATCAAGGGTTT
GGACGATGGGATACGAGGAATGAAAAGCGGTGGCACTCGACGTATCGTGG
TACCACCTGAGGTGAGT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102827:400..516+

>mRNA_Ecto-sp8_S_contig102827.469.1 ID=mRNA_Ecto-sp8_S_contig102827.469.1|Name=mRNA_Ecto-sp8_S_contig102827.469.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102827:400..516+ (Ectocarpus species8 EcLAC_412)
GTTGCTTTTTTCTCCCAGGTGGGTGACGCGAAGCGAGCCATCAAGGGTTT
GGACGATGGGATACGAGGAATGAAAAGCGGTGGCACTCGACGTATCGTGG
TACCACCTGAGGTGAGT
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