mRNA_Ecto-sp8_S_contig10278.462.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10278.462.1
Unique NamemRNA_Ecto-sp8_S_contig10278.462.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10278.462.1 vs. uniprot
Match: D7G778_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G778_ECTSI)

HSP 1 Score: 454 bits (1168), Expect = 3.000e-160
Identity = 235/238 (98.74%), Postives = 236/238 (99.16%), Query Frame = 1 
Query:    1 MAGIMGGGWKGLRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNYDGQLSKGVSGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQEKTAVVEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDIRASANVLHLVGSGFGKGAIGVTYRRDLDAVA 714
            MAGIMGGGWK LRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNYDGQLSKGVSGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQ+KTAVVEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDIRASANVL LVGSGFGKGAIGVTYRRDLDAVA
Sbjct:    1 MAGIMGGGWKWLRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRGNYDGQLSKGVSGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQDKTAVVEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQEATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHSPDKASDIRASANVLDLVGSGFGKGAIGVTYRRDLDAVA 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10278.462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G778_ECTSI3.000e-16098.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10278contigEcto-sp8_S_contig10278:4393..6906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size714
Hectar predicted targeting categorysignal peptide
Exons6
Cds size714
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10278.462.1prot_Ecto-sp8_S_contig10278.462.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10278 4393..6906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.5524068-CDS-Ecto-sp8_S_contig10278:4392..45401681143126.5524068-CDS-Ecto-sp8_S_contig10278:4392..4540Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10278 4393..4540 +
1681143126.562709-CDS-Ecto-sp8_S_contig10278:4953..50411681143126.562709-CDS-Ecto-sp8_S_contig10278:4953..5041Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10278 4954..5041 +
1681143126.5727482-CDS-Ecto-sp8_S_contig10278:5302..53661681143126.5727482-CDS-Ecto-sp8_S_contig10278:5302..5366Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10278 5303..5366 +
1681143126.5829518-CDS-Ecto-sp8_S_contig10278:5682..57631681143126.5829518-CDS-Ecto-sp8_S_contig10278:5682..5763Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10278 5683..5763 +
1681143126.5926895-CDS-Ecto-sp8_S_contig10278:6150..63681681143126.5926895-CDS-Ecto-sp8_S_contig10278:6150..6368Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10278 6151..6368 +
1681143126.60519-CDS-Ecto-sp8_S_contig10278:6791..69061681143126.60519-CDS-Ecto-sp8_S_contig10278:6791..6906Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10278 6792..6906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10278.462.1

>prot_Ecto-sp8_S_contig10278.462.1 ID=prot_Ecto-sp8_S_contig10278.462.1|Name=mRNA_Ecto-sp8_S_contig10278.462.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=238bp
MAGIMGGGWKGLRVLVLFHVLARASAGGTVSINIKDLGAIEGIQSLDIRG
NYDGQLSKGVSGKASYVFNKDRVLPAGLSASSSTDTAYGKAFGTVTVDPQ
EKTAVVEGSIRNEELGMFSTTLKASEKEGGVLGPLKWTSNPVSFPFALQE
ATPMVIAIAHDINTKEGHLSIAAKLNSNFDGKLMLPSQGDPVATLVGSHS
PDKASDIRASANVLHLVGSGFGKGAIGVTYRRDLDAVA
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mRNA from alignment at Ecto-sp8_S_contig10278:4393..6906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10278.462.1 ID=mRNA_Ecto-sp8_S_contig10278.462.1|Name=mRNA_Ecto-sp8_S_contig10278.462.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2514bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10278:4393..6906+ (Ectocarpus species8 EcLAC_412)
ATGGCAGGCATCATGGGAGGAGGCTGGAAGGGGCTGCGGGTTTTGGTGCT
CTTTCATGTTCTCGCGAGAGCGTCGGCGGGCGGGACAGTTTCGATCAATA
TCAAAGACCTGGGCGCTATCGAAGGGATCCAATCTCTGGACATCCGAGGT
TCGAAGCAATTGACTGCTACGTACATTGCTTCGGTACAGCAGTAGTTAAA
TAGCTGAAAGAGACCGCTCTGTCTCAAGTAATACTGTAGCGGCAAAAGCG
CTGTGAAAATGCATGGTATGCAACCAATGCCTTACAAGTGGAAGCTAACG
TATGCGTACACATCTGTTCAACTGCTGATGCAACTTTGTGCTGTGTGTTC
TGGACCACGGCATGTGGGTTGGCGGAGTGAAACATCGAAAGAGCAGTTAG
TTGTCTGCGCACGATGTGCGGTTCGTGCATTACAAAAAAGCAGCAGACGG
TGTCTCGCGTTAGGCGGAGCTTGATCGTATTCATGTGATCGTCGTGAGGA
GAGGCCACCAAAATTGGATCATCACAACTCGTCCTCCTGTTGGCACGCTT
TTTCTCGTTAGGGAACTATGATGGGCAACTCTCCAAGGGCGTCAGTGGCA
AGGCTTCGTACGTGTTCAACAAGGATCGCGTCTTGCCGGCTGGTCTAAGG
TGCGGTCCCCTATGCCTCGCATCCCGCTTCCCGCGTGTCTTTTCCTGATG
ACAGCTGTTCAAGAATTAGTACCCAATAAATGTGTTTACACCGCCTGTGC
TGAGTCTAAGCTATCTGGCGCGCGATATGCGTCCATAATCACTTGCATGG
GGTCATATAATTCCTGCATAACTGCTGTACGATACAGTATTGATGATTTT
CCGAGGAGGCGCTGAAACAAGTTGCCCCTGGTGGGCCTCCCTTTTTTGTC
CTTGCTGCAGCGCGTCATCGAGCACGGACACCGCGTACGGAAAAGCCTTC
GGGACGGTAACCGTTGACCCTCAGGTAATTTGTCCCAAACCGCCTTCATT
CGGCACTTTTGTTCATCGCTGCCGGTACAGCAAAAGAACTCCGCGTGTTG
CTTGGTACCCCAGGTAGCCTACTTTTACATCCATGAGATTTGCAACTGCT
GAAAGGGACGATTTTAGGGCAGCAAATGACACGCGTTGTGAATCGTACCA
TAGGACCGACATGCAGCAGCAAGAACCGGGGGGGTTGGATCTACAGTTTC
ACCACAGTCCCCCTGATATGGCTTCACGCTCAATAACATCTGCTTTCGTC
CTTGTATCCCTGCCCCGACTGTCGTTTACGACTGCCGCAGGAAAAGACGG
CCGTAGTGGAAGGATCGATCCGGAACGAGGAGCTCGGGATGTTTTCGACG
ACTTTGAAGGCCAGCGAGAAGGTGAGCACTGCCGACGTCGTGCATGCGCC
TTCTGCCTGATCACAGAACATGGCAACCGGTTGTCGCTTCTCCCCTGCCG
ACAATGACTGCTGTTGTGCCTTCGTGTTTGGCATGCTCTGAGCAAGCCTG
CTGTGGTGTACCCTGCGCATGAACCATGCCTTCGCAACAGCAATGCAGCA
GTAGTACTAGCGTGTGCACCCTGAAATCCTCACCCTTTGTCCAACATTCC
ACAAGGACGTTGAGAGGCATAAACAATAGTCGTGTTTGTGGCGCCACGGG
CAGGGACCCTGGCCTTACCTCCACCGAGAAGTTGAACTTCAAAACCCATC
GACAATGTTCTTCTCAAGTCCCCTAGTTTTGTTTTCGTGTCCCCAAAACA
CTCGTCAGGAGGGCGGCGTGCTTGGCCCGTTGAAGTGGACAAGCAACCCG
GTGTCGTTTCCCTTCGCCTTGCAAGAAGCCACCCCCATGGTGATCGCCAT
TGCTCACGACATCAACACGAAGGAGGGCCACCTTAGCATCGCGGCCAAGC
TTAACAGCAACTTCGACGGGAAGCTGATGCTCCCTTCTCAGGGAGATCCG
GTCGCAACATTGGTTGGGTCGCACAGGTAAACGTCTGCATGTGTCATGTG
TGCAGCAGCTGCAGCAGCAGTGTTTTGTGATGTGAATTTAGAGTTGTCTA
TGCAATTGGGTGCGTGCCCCGTACCACCGAAAACTGGTTTCCTTGGTATT
TCTCGGAACGCTAGAAGCTGCGCTCTTCACCTCGCCAATGGGGCAGATGG
GTATACTGCTACCGCTTTGAAACGGCGGCAGATTCTCCTGCCACCAGCAT
CACCAAGGGAACATCCAGATGTGTCGTGTGTTGTGGATCGAAGCCAAAGC
CGTCCGCCAAGATTTCCGCACCCCGACGGATATTTTGTCTCGGCAAACAG
CAGTGGCAGAACCAGGAGCACGTAGTAGACATGGTGGTGCTGGCACCTCT
TTACTCGGCAGCCGTACGCGTGTGTGTTCTTCGTTTGCGCGACCCACAGC
CCGGACAAGGCTTCGGACATCCGGGCTTCCGCGAACGTGCTGCACTTGGT
GGGGTCGGGATTCGGCAAGGGGGCGATCGGCGTAACATACCGACGCGACT
TGGACGCTGTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10278:4393..6906+

>mRNA_Ecto-sp8_S_contig10278.462.1 ID=mRNA_Ecto-sp8_S_contig10278.462.1|Name=mRNA_Ecto-sp8_S_contig10278.462.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10278:4393..6906+ (Ectocarpus species8 EcLAC_412)
ATGGCAGGCATCATGGGAGGAGGCTGGAAGGGGCTGCGGGTTTTGGTGCT
CTTTCATGTTCTCGCGAGAGCGTCGGCGGGCGGGACAGTTTCGATCAATA
TCAAAGACCTGGGCGCTATCGAAGGGATCCAATCTCTGGACATCCGAGGG
AACTATGATGGGCAACTCTCCAAGGGCGTCAGTGGCAAGGCTTCGTACGT
GTTCAACAAGGATCGCGTCTTGCCGGCTGGTCTAAGCGCGTCATCGAGCA
CGGACACCGCGTACGGAAAAGCCTTCGGGACGGTAACCGTTGACCCTCAG
GAAAAGACGGCCGTAGTGGAAGGATCGATCCGGAACGAGGAGCTCGGGAT
GTTTTCGACGACTTTGAAGGCCAGCGAGAAGGAGGGCGGCGTGCTTGGCC
CGTTGAAGTGGACAAGCAACCCGGTGTCGTTTCCCTTCGCCTTGCAAGAA
GCCACCCCCATGGTGATCGCCATTGCTCACGACATCAACACGAAGGAGGG
CCACCTTAGCATCGCGGCCAAGCTTAACAGCAACTTCGACGGGAAGCTGA
TGCTCCCTTCTCAGGGAGATCCGGTCGCAACATTGGTTGGGTCGCACAGC
CCGGACAAGGCTTCGGACATCCGGGCTTCCGCGAACGTGCTGCACTTGGT
GGGGTCGGGATTCGGCAAGGGGGCGATCGGCGTAACATACCGACGCGACT
TGGACGCTGTTGCG
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