mRNA_Ecto-sp8_S_contig10276.457.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10276.457.1
Unique NamemRNA_Ecto-sp8_S_contig10276.457.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10276.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10276contigEcto-sp8_S_contig10276:4565..5130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size568
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.2160568-CDS-Ecto-sp8_S_contig10276:4564..49541681143126.2160568-CDS-Ecto-sp8_S_contig10276:4564..4954Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10276 4565..4954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.2286813-UTR-Ecto-sp8_S_contig10276:4954..51301681143126.2286813-UTR-Ecto-sp8_S_contig10276:4954..5130Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10276 4955..5130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10276.457.1prot_Ecto-sp8_S_contig10276.457.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10276 4565..4954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10276.457.1

>prot_Ecto-sp8_S_contig10276.457.1 ID=prot_Ecto-sp8_S_contig10276.457.1|Name=mRNA_Ecto-sp8_S_contig10276.457.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=130bp
QSVSPALCHAFQQSTSSEWTRERGGLYYSFLPSLALAPSPPPWGPASKSC
SGDFFATCLWSYSEPSTLTLRGLSLLPAMYVRIRKISQQNKSIISNNIWN
SALIAASTSVPDSSQFTWLLPRERVGLLA*
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mRNA from alignment at Ecto-sp8_S_contig10276:4565..5130+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10276.457.1 ID=mRNA_Ecto-sp8_S_contig10276.457.1|Name=mRNA_Ecto-sp8_S_contig10276.457.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=566bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10276:4565..5130+ (Ectocarpus species8 EcLAC_412)
CAATCTGTCTCGCCTGCTCTCTGCCACGCGTTTCAGCAGTCAACCAGTTC
TGAATGGACGAGAGAGAGAGGCGGTCTCTACTACAGCTTTCTCCCCTCTC
TTGCTCTAGCTCCCTCTCCCCCTCCGTGGGGACCGGCCTCGAAAAGTTGT
TCAGGAGATTTTTTTGCTACCTGCTTGTGGAGCTATTCCGAACCATCAAC
TCTGACGCTCCGAGGGCTCTCGCTCCTTCCCGCCATGTACGTCCGTATTC
GCAAGATATCCCAACAAAATAAAAGCATCATTTCCAACAACATTTGGAAC
TCAGCTCTAATAGCCGCATCTACTTCCGTGCCAGACTCAAGCCAATTCAC
TTGGTTGTTGCCTAGGGAACGTGTTGGATTGCTGGCATAGCACCCTGCAT
GTGCGATAGCAGCGCTCTAACCTTGCACAATCCTCCTACCCTCAGCCTAC
ACCGGAGGAACACAGAATTATTTCCCATAAAGGTGTGCCAACCTCTCCAA
TACTACATACTTGATACCAAACATTCTTTACGCGGAAGTGAATAACTTAA
TTCCTCTTACCCCCCA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10276:4565..5130+

>mRNA_Ecto-sp8_S_contig10276.457.1 ID=mRNA_Ecto-sp8_S_contig10276.457.1|Name=mRNA_Ecto-sp8_S_contig10276.457.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10276:4565..5130+ (Ectocarpus species8 EcLAC_412)
CAATCTGTCTCGCCTGCTCTCTGCCACGCGTTTCAGCAGTCAACCAGTTC
TGAATGGACGAGAGAGAGAGGCGGTCTCTACTACAGCTTTCTCCCCTCTC
TTGCTCTAGCTCCCTCTCCCCCTCCGTGGGGACCGGCCTCGAAAAGTTGT
TCAGGAGATTTTTTTGCTACCTGCTTGTGGAGCTATTCCGAACCATCAAC
TCTGACGCTCCGAGGGCTCTCGCTCCTTCCCGCCATGTACGTCCGTATTC
GCAAGATATCCCAACAAAATAAAAGCATCATTTCCAACAACATTTGGAAC
TCAGCTCTAATAGCCGCATCTACTTCCGTGCCAGACTCAAGCCAATTCAC
TTGGTTGTTGCCTAGGGAACGTGTTGGATTGCTGGCATAG
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