mRNA_Ecto-sp8_S_contig102736.455.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102736.455.1
Unique NamemRNA_Ecto-sp8_S_contig102736.455.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A7S2BFW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BFW1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.010e-7
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:   19 GLQPNVVCYGAAVDACAKGGQWERAVGLLQEM 114
            G++PNV+ + AA+DACAKGGQWE+A+ LL EM
Sbjct:    4 GVKPNVISFNAAIDACAKGGQWEKALSLLDEM 35          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A7S2FHK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHK7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.560e-7
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:   19 GLQPNVVCYGAAVDACAKGGQWERAVGLLQEM 114
            G++PNV+ + AA+DACAKGGQWE+A+ LL EM
Sbjct:    4 GVKPNVISFNAAIDACAKGGQWEKALSLLDEM 35          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A7S2AIS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIS8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.590e-6
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   13 GEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEM 114
            G+G +P+V+ YGAA+ AC KGGQWE+A+ +L EM
Sbjct:  114 GDGFEPDVIYYGAAISACEKGGQWEKALVILDEM 147          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A7S2BGS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGS7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.170e-5
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 1
Query:   28 PNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEP 135
            PNV+ + AA+ AC KG QWE+AV LLQEM   GV+P
Sbjct:    1 PNVISFSAAISACQKGMQWEKAVELLQEMQLHGVKP 36          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A812ZMR3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZMR3_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 1
Query:   19 GLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVE 132
            G+QPNVVC+GA + ACAKG  WE A  LL E+ +  ++
Sbjct:   14 GIQPNVVCFGAGITACAKGRHWEGAFALLDELRERALD 51          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A813D6S3_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D6S3_POLGL)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1
Query:    7 MAGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPD 138
            M   G++ NV  Y  A+ ACAKGGQW+RA+ LL  M D  V PD
Sbjct:  143 MLARGVEANVFHYNVALSACAKGGQWQRALSLLSGMPDMAVIPD 186          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A813DIV2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DIV2_POLGL)

HSP 1 Score: 49.7 bits (117), Expect = 1.280e-5
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1
Query:    7 MAGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPD 138
            M   G++ NV  Y  A+ ACAKGGQW+RA+ LL  M D  V PD
Sbjct:  888 MLARGVEANVFHYNVALSACAKGGQWQRALSLLSGMPDMAVIPD 931          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 1.750e-5
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   19 GLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPD 138
            G  P+VV Y A + AC++ G WERA+GLL +M + G+EP+
Sbjct:  561 GPTPDVVSYSATITACSRAGNWERALGLLDQMREDGLEPN 600          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: A0A813B4V0_9DINO (EMB2654 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B4V0_9DINO)

HSP 1 Score: 48.5 bits (114), Expect = 2.160e-5
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 1
Query:   13 GEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPDR 141
            G+   P    + AA+ AC KGG+W+RA+ LL  M DA V PDR
Sbjct:   16 GKNCSPTATSFNAAITACGKGGEWQRALILLSSMHDAAVLPDR 58          
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Match: R1BI14_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BI14_EMIHU)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1
Query:    7 MAGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGD 120
            M   G++P+V+ Y AA+ AC K GQWE+AV LL EM D
Sbjct:    1 MTAAGVRPDVISYNAAISACEKAGQWEKAVSLLCEMPD 38          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102736.455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S2BFW1_9STRA2.010e-765.63Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2FHK7_9STRA5.560e-765.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2AIS8_9STRA1.590e-658.82Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2BGS7_9STRA1.170e-561.11Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A812ZMR3_9DINO1.280e-552.63Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A813D6S3_POLGL1.280e-552.27Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A813DIV2_POLGL1.280e-552.27Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
D8LCM4_ECTSI1.750e-550.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A813B4V0_9DINO2.160e-548.84EMB2654 protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
R1BI14_EMIHU2.180e-555.26Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102736contigEcto-sp8_S_contig102736:2..145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.108259-UTR-Ecto-sp8_S_contig102736:1..71681143126.108259-UTR-Ecto-sp8_S_contig102736:1..7Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig102736 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.11824-CDS-Ecto-sp8_S_contig102736:7..1451681143126.11824-CDS-Ecto-sp8_S_contig102736:7..145Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102736 8..145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102736.455.1prot_Ecto-sp8_S_contig102736.455.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102736 8..145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102736.455.1

>prot_Ecto-sp8_S_contig102736.455.1 ID=prot_Ecto-sp8_S_contig102736.455.1|Name=mRNA_Ecto-sp8_S_contig102736.455.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=46bp
MAGEGLQPNVVCYGAAVDACAKGGQWERAVGLLQEMGDAGVEPDR*
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mRNA from alignment at Ecto-sp8_S_contig102736:2..145+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102736.455.1 ID=mRNA_Ecto-sp8_S_contig102736.455.1|Name=mRNA_Ecto-sp8_S_contig102736.455.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102736:2..145+ (Ectocarpus species8 EcLAC_412)
CGGCAGATGGCCGGGGAGGGTCTGCAACCGAACGTTGTGTGCTACGGGGC CGCCGTCGACGCTTGCGCTAAAGGGGGGCAGTGGGAGAGGGCGGTAGGGC TCCTCCAGGAGATGGGGGACGCTGGTGTTGAGCCTGACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102736:2..145+

>mRNA_Ecto-sp8_S_contig102736.455.1 ID=mRNA_Ecto-sp8_S_contig102736.455.1|Name=mRNA_Ecto-sp8_S_contig102736.455.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102736:2..145+ (Ectocarpus species8 EcLAC_412)
ATGGCCGGGGAGGGTCTGCAACCGAACGTTGTGTGCTACGGGGCCGCCGT
CGACGCTTGCGCTAAAGGGGGGCAGTGGGAGAGGGCGGTAGGGCTCCTCC
AGGAGATGGGGGACGCTGGTGTTGAGCCTGACAGGTGA
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