mRNA_Ecto-sp8_S_contig10270.454.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10270.454.1
Unique NamemRNA_Ecto-sp8_S_contig10270.454.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10270.454.1 vs. uniprot
Match: A0A6H5JH17_9PHAE (Clu domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH17_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 7.620e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:  583 MQVRQLLGEVPQTCLYSAFRLVALTPEPEGTEE 681
            MQVRQLLGE+PQTCLYSAFRLVALTPEPEGTEE
Sbjct:    1 MQVRQLLGEIPQTCLYSAFRLVALTPEPEGTEE 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10270.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH17_9PHAE7.620e-1096.97Clu domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10270contigEcto-sp8_S_contig10270:521..5090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score154.1
Seed ortholog evalue5e-35
Seed eggNOG ortholog2880.D7G8X4
Model size682
KEGG koko:K03255
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
Cds size423
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.0403695-UTR-Ecto-sp8_S_contig10270:520..7711681143126.0403695-UTR-Ecto-sp8_S_contig10270:520..771Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10270 521..771 +
1681143126.0506754-UTR-Ecto-sp8_S_contig10270:4367..43741681143126.0506754-UTR-Ecto-sp8_S_contig10270:4367..4374Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10270 4368..4374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.0700092-CDS-Ecto-sp8_S_contig10270:4374..47041681143126.0700092-CDS-Ecto-sp8_S_contig10270:4374..4704Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10270 4375..4704 +
1681143126.0827665-CDS-Ecto-sp8_S_contig10270:4997..50901681143126.0827665-CDS-Ecto-sp8_S_contig10270:4997..5090Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10270 4998..5090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10270.454.1prot_Ecto-sp8_S_contig10270.454.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10270 4375..5090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10270.454.1

>prot_Ecto-sp8_S_contig10270.454.1 ID=prot_Ecto-sp8_S_contig10270.454.1|Name=mRNA_Ecto-sp8_S_contig10270.454.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=141bp
MVPDKVEVSAAGTTAAAATGPPSPTAAVGDVPAVAATTTVKNVDAAADAE
DVEAAIDGNGEAAAAAAAEQEGGEQEIAVLLTVHPPQTTPAEAAAPLVLE
PLGGMELVMQVRQLLGEVPQTCLYSAFRLVALTPEPEGTEE
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mRNA from alignment at Ecto-sp8_S_contig10270:521..5090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10270.454.1 ID=mRNA_Ecto-sp8_S_contig10270.454.1|Name=mRNA_Ecto-sp8_S_contig10270.454.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4570bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10270:521..5090+ (Ectocarpus species8 EcLAC_412)
CTCTGCTCTCTGCTGGCCATCGACTGTCCAGCTCTCTCCCTCGCTCCGCG
TGCTGTGCTCGACGAGGTATCTTGCTGATCGATATTTAGACGGTGTGCTT
GGATAGAAGCTACTGCAACTGAGCGAGCTTTGGCGCGGCCCAGACCGCCT
GTTTCCAACAGCAGCAATAACCAGCAGCAGCAGCAGCAGGAGCAGCAGCA
GCAGGCTTGGCAGCCACAGCAACGTTCCGGCAAGCGATCTGGTTTAACAG
GGTAAGAGAGGAGTCCTAGGCAGGAATACCTCGTGGCGTTTGGTGGTCGA
GTCCTCTCGGGTACGCACTTGGATCTGTCGAGTTCGCAGGTCTGTTGCCT
GTGAGTGGTGGAGCGTGGTGCTGCTGTATCATCGTCTTTTCGTTATCGCG
CCGCCTCAGCACCTCAGTCATCATCATCAGCAAGCAAATCTATCTGTATC
CATGAGAACCCCGCACCCTTTTAGGCACAACCACCGCCACGCCTGATACT
GCTGTCAAGGTTGTGTGTGTGCATTCGTCCCACGTGCGCCTTCTGCGTGC
ACCTTGCTACCCATGGTGCTGCAGCTGGGCAGCGCCCCCCCCCCTCCCCA
AGTCATCACTTGTTCGGGAGAGGCGGCGTTGATTTGATGATGCGGGTTTT
TCGTGTCTGCAATCAATCTCCCGCTGCCAGCACGGCGCCGGCTCTTGTAA
GTAGAATGTACGCAAGTGCAAAAAAAATCGCCAGCTGCACAACATGCTAC
GTTGCGCATGGATCACTACATACGCCCGCACAGATTATGGAGGTGCTGTG
GGCACGCATCGGCCATTTACAACGTCGCATCGGCAGACGAGAGCAGCACT
TCCTCCACGGTTCTTTATTCGTACGTTTGAATGGTGCTTCAGGGGGCTGG
CCGGGCGGCGGGTCTCCTGCTGGGAGCTACTGTAGAAAGCTCGACGGAAG
TTCATGCAGATACAACAAAAAGCGGCGTTTTTCCTCTTTCGTCCAGGCAC
GCGGTTTCAATGCTGCTGCCGTTCTGTGTCCCAAGCCCCCTTTTCCTTCG
TCAGTATTATGACCAGTGTGCAGCACCCGTTGTGCTCCACTAGATATGGG
TGGCAGAAAACCGGCGGCCGCGGTCACAGATTACTCACGACCTAAATATG
CATACAACTGCTTGCTGTGTTTGACACACAGCGTATATTTGGCATCATGC
AACGGGACAACTGAGGTGGTGTCGGCCAATTTAGGAGAGAGCTACTGTAG
CGGTGTTGTGTGCGGTGGGTTGCTTGCTGCACAAGTGCTGATGTTGCGGA
AAACGTGAAGCTTCCACGGACGGTTCACTTTACTTCTGTAAAGCGAATCA
CCCTTTTTTTGGGTCGGCGGCGTAACCGCAGTGCGTACCGCCGTGAGCTG
TGAGAGTGATCGCACGCCACCCCCCCACCCCTATTAACCGTTGTTCACAG
CTTGGCGATTTCTTCGCAACCAGAAGGATGCCTCCAGTTCCGGGAAAGTA
TTGGTTTTGGGGAAAGATGCGACGATAGAGCTTTCCTTTGACACATTGGC
CGGTTCGCGCCCCTCTTGGTTGTGAAGTACAATGGCAACGGAGCTTGAAC
GGGGGGGGGGGGGGTTCCCCATCGCCCGCAACATCACGGTGGCCCTTGTA
GCTTGTGCCGAGAATGAACTGCCTCTCGTTTCACCATGATCGGTTTGGTA
CTCCTCCTGTAAGTCTACGGTATGCCAGACTCGGAGAAGCGCCACCCCCC
ACTACTCAAAACAAAAAGCGTGAGAACTGCTGCTGTTGCTGCCGCCAGGT
AGCCCGCCTCCCGGGGGTACGAATCCGTTGAAGCCCCCGAGACCGCTGTT
CTGTCTCGATCTGCGGATCTGTGAACCGTCCACATACTGCTTTGCTCCCC
TCTCCTGCGTACTTAGGGTAACAACCGTGGCATTCTATTAGGCCATTCTT
CAATATTTGCCTTCCACCTTCCTTCTTTGAATACCAACGGCCCGTGTGCT
CGTATGCTCAGCAGCATTCCGTAACAAGTCCTTAAGGGGGGAAGAGCAGG
GGTTTTGACCCTGGCTCTTTTCCCATACTTTAATCCTATACAAATAAAGA
AAACAACCTTCCCGCCAGGGTTACGTTAGGCATTCTATTGTCATCGGTAG
AGGACACCATGAAGAAGCGTCGTGCGTTCTGGCACGTTCAGGTTTGCTAC
TGGAGTGGAAAATATCGAAGGTCGCAGCAGCCTCTGAAAACAGCCCGAAA
TCTGCGCCGGAACCAAGCGGCATCCAACATTTGTCAGCAGCATCTATGTA
GTGGCGTCAGCTACTGCTGTAAACCCGTAGTTGAGGAGATTGGGGTCGGT
GGCGGCGAGCATGGCTGTGACAAAATGTTGGATGCCGCTTGGTTCCGGCG
CAGATTTCGGGCTGTTTTCAAACCCTGCTGCGACCTTCGATATTTCAGCT
CCAGTAGCAAACCTGAACGTGGCAGCACGCATGACGCCTCTTCATGATGT
CTTCTACTGCTGACAATAGAATGTCAAACCTAACCCTCAAAACTGACCTT
ATTTGAGCGCCTTCCTTGTTGGCTCTTTTTACTTGAACTTAGAATGGTGT
GAATTTTTATCTTGATTTCAAAAATAGGCCGGTGGAGGTAGATGCGTGAA
ATGTATGTTTTGAGCAGCCTCTACTGCCGCCCTGTGCGAGAATCAACGAT
TTCTGTTTTTCGCGATGCCTCCCGACTGGTCTTGTGTGTCTGTTGTACAA
CTTCTGGACCTCTGGCGTTTGTTTTCAAAATTCGTCAACATCAAAATTGC
TCTCCTTCCCCCCCTGAACGTCGTCCGACGTTTTCAAGGTGTCCGTGTGG
GCGGAGGGGTTGTGCGGGTCACTGTGATGTGCGTTGTGTTTTGTTGTGTC
TTGTTTAGATGGCTGAATGAAGAATGTAGCGTCCTTTGTCCAATACGAAG
AAGTACATGTTACACCGCCATCGCCATGTGTCTTGTTCACCAAAACAGGG
TTGGTTATCTGCTGTTCGGCCACCCGGTCTCGATGATGGTGCAATAACCC
GCCTCTAAGCGCGGAACATCTTCGCCACAAATTCTTGTAGCTGAACAGGA
TGCCACTACAGCAGTAGGTGTTGTTCCGCACGTCCTTACAGTTTGTTCCG
TGTTCCGTGTTGTTGCTTCATTTCCCAGCACCATTGCCAGAATAGCACTG
TGTTCCGTTCGTTCTAGTCGGCATGGTATTTCCAGCCAATCTTATCCGGG
TGTACGCCAGCACGAAGAAGACATGTTTTGCCAGCGGGGATGAGCACGTG
TCACGCATTTCGACTGCCGTGGTCGCGCGAGTAATCGCACCGCCCCTTGC
ACTGACTGTTCACTGCCCGATTGCCCCACGACTGCACTGTCACGTAAGAC
GCTGCGAATAGTTCTCTTTCCGAAGCCACCCTTTTCAACATTGGTGCCCT
CTCGGTTGTGTGAGATAGTAGGGCTATGGGAGTCTGCCTGGGGGGAGGGT
GCGATCACTCGCACGTTTTGCGTACCGCTGCAATCATCTTGTTTTCTTCC
CCTCCCAGAGAATAAATGAATCTCTCACACAGAACCTAAGATATCCCGGG
CTCTTTCGTCTGTGGATAGAGATGAAATCGTGACGGCGCTTCAGCGAGAA
AAAGTACAGTTACAGTAACAACATTTGTCAACAGGCTGTGCGTAGTCATT
CTGCCCCCCTGCATACCCCCTTTGTTTCGGCAGCTTCTGGCCTTGGACGT
TGCACTGCTGTATACAATCCTGAGACTCCAATGACCAACCACGGTTGCCT
ACCCTCGCCCCCCCCTCCCCCCACGACGTGCTCAATGACCACAACAGGTG
TGAGATGGTCCCTGACAAGGTCGAAGTGAGTGCCGCCGGCACTACCGCCG
CTGCTGCCACCGGCCCCCCTTCTCCGACGGCGGCGGTGGGCGATGTTCCC
GCTGTTGCGGCGACGACGACGGTGAAGAACGTCGATGCTGCTGCCGACGC
AGAAGACGTCGAAGCCGCCATCGACGGCAACGGGGAAGCAGCAGCAGCAG
CAGCAGCGGAACAGGAAGGGGGAGAGCAGGAGATCGCGGTGTTGTTGACG
GTGCACCCGCCGCAGACGACGCCGGCGGAGGCGGCCGCGCCGCTTGTGCT
CGAGCCCCTGGGGGGCATGGAGCTCGTGATGCAGGTGTGAATGAGGTGCC
GTAGCGGCTCATTCACCGGTGTAGGTCTTTCTGCTATTGTATCGCATGTT
GAAACTCCGTCATGTCGGTACATAGTGGGGGGGGGGGTAATAGCAGGTCA
TGAGCGCCTACAATTGTACACATGTCCGCATGTTGTTGTTTCTCGACGTG
TGTCCCCCATGGTACAGTAGACCAATCCACGGAGTAAAGCACATTAACAA
TACGAAGTGTCGATTCCATTCCTGCTGTCTGTCTCCGGTTAAACCGTCGT
GCGGCACCGACGCCGCCGCCTCCACAGGTAAGGCAGCTGCTGGGAGAGGT
CCCGCAGACATGCCTCTACTCCGCCTTCCGTCTGGTGGCGTTGACGCCCG
AGCCCGAAGGGACCGAGGAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10270:521..5090+

>mRNA_Ecto-sp8_S_contig10270.454.1 ID=mRNA_Ecto-sp8_S_contig10270.454.1|Name=mRNA_Ecto-sp8_S_contig10270.454.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10270:521..5090+ (Ectocarpus species8 EcLAC_412)
ATGGTCCCTGACAAGGTCGAAGTGAGTGCCGCCGGCACTACCGCCGCTGC
TGCCACCGGCCCCCCTTCTCCGACGGCGGCGGTGGGCGATGTTCCCGCTG
TTGCGGCGACGACGACGGTGAAGAACGTCGATGCTGCTGCCGACGCAGAA
GACGTCGAAGCCGCCATCGACGGCAACGGGGAAGCAGCAGCAGCAGCAGC
AGCGGAACAGGAAGGGGGAGAGCAGGAGATCGCGGTGTTGTTGACGGTGC
ACCCGCCGCAGACGACGCCGGCGGAGGCGGCCGCGCCGCTTGTGCTCGAG
CCCCTGGGGGGCATGGAGCTCGTGATGCAGGTAAGGCAGCTGCTGGGAGA
GGTCCCGCAGACATGCCTCTACTCCGCCTTCCGTCTGGTGGCGTTGACGC
CCGAGCCCGAAGGGACCGAGGAA
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