mRNA_Ecto-sp8_S_contig1027.450.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1027.450.1
Unique NamemRNA_Ecto-sp8_S_contig1027.450.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: D8LIZ8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ8_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.260e-49
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLM 
Sbjct:  111 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMA 199
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: A0A835Z3W0_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.070e-40
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            VET +RPY FIKFDKVIQRKR+E+LDP SR+NMARLN DLADIH IMK+NI+EVLNRGE+LDHVS+ISK L+TQAEQFKW+SKKLSLM 
Sbjct:  111 VETVSRPYGFIKFDKVIQRKRREYLDPSSRDNMARLNSDLADIHDIMKKNIQEVLNRGERLDHVSQISKDLATQAEQFKWNSKKLSLMA 199
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: A0A6G0WBK5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBK5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.380e-30
Identity = 57/89 (64.04%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            V T ARPYAFIKFDKVIQ+KRKE+ DP S  N+++LN DLADIH++M+QNI+EVLNRGE +D VS+IS  ++ ++++FKW+SKKLSL  
Sbjct:  111 VTTVARPYAFIKFDKVIQKKRKEYTDPSSSQNVSKLNSDLADIHNVMRQNIQEVLNRGEAIDRVSQISSNIADRSKEFKWASKKLSLQA 199
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: F0VZT0_9STRA (Vesicletrafficking protein SEC22b putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZT0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.750e-30
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            V TAARPYAFIKFDK IQRKRKE+ DP S  NM+RLN+DLADIH+IM+QNI+EVLNRGE+++HVS IS  L+ +++  KW +KKL +  
Sbjct:  111 VTTAARPYAFIKFDKFIQRKRKEYTDPSSSQNMSRLNNDLADIHNIMRQNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRMQA 199
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: A0A485KKL0_9STRA (Aste57867_8523 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485KKL0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.890e-30
Identity = 57/94 (60.64%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMVRRQSH 282
            V T ARPYAFIKFDK IQ+KRKE+ DP S  NM++LN+DLADIH++M+QNI+EVLNRGE +D VS+IS  ++ ++++FKW +KKLSL    Q +
Sbjct:  111 VTTVARPYAFIKFDKFIQKKRKEYTDPSSSQNMSKLNNDLADIHNVMRQNIQEVLNRGEAIDRVSQISSNIADRSKEFKWGAKKLSLQAMYQKY 204
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: H3GVF5_PHYRM (Uncharacterized protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GVF5_PHYRM)

HSP 1 Score: 113 bits (282), Expect = 3.330e-29
Identity = 57/89 (64.04%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            V T ARPYAFIKFDK IQ+KRKE+ DP S  NM RLNDDLADIH+IM++NI+EVLNRGE+++HVS IS  L+ +++  KW +KKL L  
Sbjct:  114 VTTVARPYAFIKFDKFIQKKRKEYADPNSSQNMHRLNDDLADIHNIMRKNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRLQA 202
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: A0A662XIN1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XIN1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.220e-29
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            V T ARPYAFIKFDK IQ+KRKE+ DP S  NM RLNDDLADIH+IM++NI+EVLNRGE+++HVS IS  L+ +++  KW +KKL +  
Sbjct:  104 VTTVARPYAFIKFDKFIQKKRKEYADPNSSQNMHRLNDDLADIHNIMRKNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRMQA 192
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: A0A3F2RPY3_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RPY3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.190e-29
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            V T ARPYAFIKFDK IQ+KRKE+ DP S  NM RLNDDLADIH+IM++NI+EVLNRGE+++HVS IS  L+ +++  KW +KKL +  
Sbjct:  111 VTTVARPYAFIKFDKFIQKKRKEYADPNSSQNMHRLNDDLADIHNIMRKNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRMQA 199
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: A0A067CJ44_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJ44_SAPPC)

HSP 1 Score: 112 bits (280), Expect = 6.190e-29
Identity = 56/94 (59.57%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMVRRQSH 282
            V T ARPYAFIKFDK IQRKRKE+ DP S  NM+++N+DLADIH++M++NI+EVLNRGE +D VS++S  L+ +++ FKW +KKLSL    Q +
Sbjct:  111 VTTIARPYAFIKFDKFIQRKRKEYTDPSSSQNMSKVNNDLADIHNVMRKNIQEVLNRGEAIDRVSQMSSNLADRSKDFKWGAKKLSLQAMYQKY 204
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BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Match: K3X2R4_GLOUD (Uncharacterized protein n=4 Tax=Pythiaceae TaxID=4782 RepID=K3X2R4_GLOUD)

HSP 1 Score: 112 bits (280), Expect = 6.190e-29
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    1 VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQNIEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMV 267
            V T ARPYAFIKFDK IQ+KRKE+ DP S  NM RLNDDLADIH+IM++NI+EVLNRGE+++HVS IS  L+ +++  KW +KKL +  
Sbjct:  111 VTTVARPYAFIKFDKFIQKKRKEYTDPNSSQNMHRLNDDLADIHNIMRKNIQEVLNRGERVEHVSRISSNLADRSKDLKWGAKKLRMQA 199
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1027.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ8_ECTSI1.260e-4998.88Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835Z3W0_9STRA3.070e-4080.90Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A6G0WBK5_9STRA1.380e-3064.04Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0VZT0_9STRA2.750e-3065.17Vesicletrafficking protein SEC22b putative n=1 Tax... [more]
A0A485KKL0_9STRA3.890e-3060.64Aste57867_8523 protein n=5 Tax=Aphanomyces TaxID=1... [more]
H3GVF5_PHYRM3.330e-2964.04Uncharacterized protein n=20 Tax=Peronosporaceae T... [more]
A0A662XIN1_9STRA5.220e-2962.92Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3F2RPY3_9STRA6.190e-2962.92Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
A0A067CJ44_SAPPC6.190e-2959.57Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
K3X2R4_GLOUD6.190e-2962.92Uncharacterized protein n=4 Tax=Pythiaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1027contigEcto-sp8_S_contig1027:5285..6610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score171.4
Seed ortholog evalue2e-40
Seed eggNOG ortholog2880.D8LIZ8
Preferred nameSEC22B
Model size282
KEGG koko:K08517
KEGG Pathwayko04130,ko04145,ko05134,map04130,map04145,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0002376,GO:0002474,GO:0002478,GO:0002479,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0007154,GO:0007267,GO:0008104,GO:0008150,GO:0009306,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010506,GO:0010507,GO:0010604,GO:0010639,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016241,GO:0016242,GO:0019222,GO:0019882,GO:0019884,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030139,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030666,GO:0030670,GO:0031090,GO:0031201,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0034613,GO:0042175,GO:0042176,GO:0042590,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045335,GO:0045732,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048279,GO:0048280,GO:0048284,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061025,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0198738,GO:1902115,GO:1902116,GO:1902902,GO:1990668,GO:2000785
Exons3
EggNOG free text desc.vesicle fusion with Golgi apparatus
EggNOG OGsCOG5143@1,KOG0862@2759
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_002140.1
Cds size282
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.8257399-CDS-Ecto-sp8_S_contig1027:5284..53291681143125.8257399-CDS-Ecto-sp8_S_contig1027:5284..5329Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1027 5285..5329 +
1681143125.8375695-CDS-Ecto-sp8_S_contig1027:5993..61351681143125.8375695-CDS-Ecto-sp8_S_contig1027:5993..6135Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1027 5994..6135 +
1681143125.845897-CDS-Ecto-sp8_S_contig1027:6515..66101681143125.845897-CDS-Ecto-sp8_S_contig1027:6515..6610Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1027 6516..6610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1027.450.1prot_Ecto-sp8_S_contig1027.450.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1027 5285..6610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1027.450.1

>prot_Ecto-sp8_S_contig1027.450.1 ID=prot_Ecto-sp8_S_contig1027.450.1|Name=mRNA_Ecto-sp8_S_contig1027.450.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=94bp
VETAARPYAFIKFDKVIQRKRKEFLDPQSRNNMARLNDDLADIHSIMKQN
IEEVLNRGEKLDHVSEISKTLSTQAEQFKWSSKKLSLMVRRQSH
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mRNA from alignment at Ecto-sp8_S_contig1027:5285..6610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1027.450.1 ID=mRNA_Ecto-sp8_S_contig1027.450.1|Name=mRNA_Ecto-sp8_S_contig1027.450.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1326bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1027:5285..6610+ (Ectocarpus species8 EcLAC_412)
GTGGAGACGGCGGCCCGACCATACGCCTTCATCAAGTTCGACAAGGTGCG
AAGAGATAGCTCCTCCTGATTTTTTTGTGTGTTGTAAAAGCCTAATATTT
AGCACAAGTTGGTGTTGTTTTGTTCCTTTTGTTGTGTTGCAGACCTTGGT
TGAAATCCTTCGGTAAGCTTGCTCGCACCAGTAGTGCAATTTTACAATAA
TGCTCTCTTCTCCGTTTTTGTTTGTGTGCTTCCGACACGAGAGGACTTGG
CTGAAGTTTGTGGGGCACATACAGCAAAGCCGTGTTTCCTTCTCGAGCGG
GTTCTGCGTTGTCATTCCTGCGTAACTCCTATCCCCCCACGCCCCTTCCT
ATGTAGTAGATGGCACACAGGAAAAAAAAGAAAATTTCTGTCATGCAACG
ATCGTGTGAACGACCATTTCTCGAACGTGGATATTTGGCTCCGTTGTCGA
GACACCCGGTCTGATGGTCGACCCTCTCGGAGGCGAGGAACAGAAGAGTT
CACGTTCCGCCCACCCCCACCCCTTGCTCTTTTTTTGTTTCCCCCGGACG
TATGAAGCTCTCCTAAACCAAACCAATGCTGTTCCTGCTGCTGTTCCCTG
CTGCTGTTGCAGCTGCGGTTGCTTGGTGTGTTGGTCCACATGTTGTCGTC
CTGCTGTTAAAACGCGCTGCTGCTGCTGCTGCTGCTGCTGCGTTGTCGAT
TTCTCGCAGGTTATCCAGCGTAAGCGAAAGGAGTTCCTCGACCCACAGAG
CAGAAACAACATGGCGAGGCTCAACGACGACCTCGCCGACATCCACAGCA
TCATGAAGCAGAACATCGAGGAGGTTCTCAACAGAGGGGAGAAGCTCGAC
CGTGAGTTCGCCAAGCGTTTTCGTTAGTCCCGGCGTGTTGGTTTTGTGCC
GTTGCGGGCGCGCCCGTGGCCCGACGTACGAAGGGGTTCACAACTGGAAC
AGACGTACAAAGTTTGACCTGTCGACCTTACCTTTTCAATGGTTGTTTCC
GTAGTAGCTTGAACCTGAGTCGGCGGTGGTGTCGAGGGTAGTGAGGTGTG
GTGGGAGGTGGGAATTGGACGAGCGTAATGGACGTTACAGAATTGACAGC
TAGATGGGTTAAACTGGCAAGTGAGTCACCTGGAGGGTTTCGTGTTGGGG
CTTGGACCCGCTGTTTCACGTGTCCCAGGCGTTGTTTTTGCTGTTGTTTT
TCGTCCCCACCCCCCCGCTCCCTGCCTGCAGACGTTTCCGAGATCTCGAA
GACGTTGTCGACGCAGGCGGAGCAGTTCAAGTGGAGCTCGAAAAAGCTGT
CGCTCATGGTGAGACGGCAGTCACAT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1027:5285..6610+

>mRNA_Ecto-sp8_S_contig1027.450.1 ID=mRNA_Ecto-sp8_S_contig1027.450.1|Name=mRNA_Ecto-sp8_S_contig1027.450.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1027:5285..6610+ (Ectocarpus species8 EcLAC_412)
GTGGAGACGGCGGCCCGACCATACGCCTTCATCAAGTTCGACAAGGTTAT
CCAGCGTAAGCGAAAGGAGTTCCTCGACCCACAGAGCAGAAACAACATGG
CGAGGCTCAACGACGACCTCGCCGACATCCACAGCATCATGAAGCAGAAC
ATCGAGGAGGTTCTCAACAGAGGGGAGAAGCTCGACCACGTTTCCGAGAT
CTCGAAGACGTTGTCGACGCAGGCGGAGCAGTTCAAGTGGAGCTCGAAAA
AGCTGTCGCTCATGGTGAGACGGCAGTCACAT
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