mRNA_Ecto-sp8_S_contig102659.445.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102659.445.1
Unique NamemRNA_Ecto-sp8_S_contig102659.445.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: D8LB53_ECTSI (Glutamine amidotransferase type-2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB53_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.630e-62
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 1
Query:    1 QANTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            QANTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQG+VRLENVHPFSRELWG Y +
Sbjct:    8 QANTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGKVRLENVHPFSRELWGSYWI 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: A0A2X0QVD5_9PROT (Putative glutamine amidotransferases class-II n=2 Tax=Candidatus Nitrotoga fabula TaxID=2182327 RepID=A0A2X0QVD5_9PROT)

HSP 1 Score: 143 bits (360), Expect = 2.420e-40
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            NTPTD CFSF GFR+RGG TG H DGWG+AFFEGKG R F D  PSA SPIA L+ NYPI +  VIAH+R ATQG V LEN HPF RELWG+Y V
Sbjct:   10 NTPTDICFSFTGFRKRGGETGVHADGWGIAFFEGKGVRLFLDPKPSAQSPIAELVRNYPIHSLNVIAHIRKATQGHVSLENTHPFVRELWGQYWV 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: A0A356B8I3_9GAMM (Class II glutamine amidotransferase (Fragment) n=1 Tax=Rheinheimera sp. TaxID=1869214 RepID=A0A356B8I3_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 5.130e-40
Identity = 65/94 (69.15%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    4 ANTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRY 285
            AN PTD CFSF+G +ERGGRTG H DGWGVAF+E KG   F D+LPS  S IA L+ +YPIK+  VIAHVR A +GRV LEN HPFSRELWGRY
Sbjct:    9 ANVPTDICFSFKGLKERGGRTGPHKDGWGVAFYENKGVCTFKDALPSYQSEIARLVSDYPIKSCAVIAHVRQANRGRVALENTHPFSRELWGRY 102          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: UPI0019BD1715 (Class II glutamine amidotransferase n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=UPI0019BD1715)

HSP 1 Score: 142 bits (357), Expect = 5.580e-40
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            N PTD CFSF GFR RGG T  H DGWG+AFFEGKG R F D LPSA SP+A L+ NYPIK++ VIAH+R ATQG V LEN HPF RELWG Y +
Sbjct:   10 NIPTDICFSFTGFRARGGITDHHQDGWGIAFFEGKGVRQFLDPLPSAHSPVAELVRNYPIKSKNVIAHIRKATQGNVALENTHPFMRELWGYYWI 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: A0A4Z0BJM1_9BURK (Class II glutamine amidotransferase n=1 Tax=Ramlibacter rhizophilus TaxID=1781167 RepID=A0A4Z0BJM1_9BURK)

HSP 1 Score: 141 bits (356), Expect = 5.640e-40
Identity = 66/95 (69.47%), Postives = 73/95 (76.84%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            NTPTD  FSF GF +RGGRT  H DGWG+AFFEGKG R+F D  P+  SP+A LI  YPIK+RTVIAH+R ATQG V LEN HPF RELWGRY V
Sbjct:   10 NTPTDVAFSFTGFAQRGGRTDHHADGWGIAFFEGKGVRHFVDHQPACASPVAELIRKYPIKSRTVIAHIRKATQGVVALENCHPFVRELWGRYWV 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: A0A4Q3LM83_9BURK (Class II glutamine amidotransferase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4Q3LM83_9BURK)

HSP 1 Score: 141 bits (355), Expect = 7.980e-40
Identity = 66/95 (69.47%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            NTPTD  FSF GFR+RGGRT  H DGWG+AFFEG+G R+F D  P+A SPIA+LI  YPIK+R V+AH+R ATQG V LEN HPF RELWGRY V
Sbjct:   10 NTPTDVTFSFAGFRQRGGRTDEHTDGWGIAFFEGRGIRHFVDHQPAAESPIADLIRRYPIKSRHVVAHIRKATQGVVALENCHPFVRELWGRYWV 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: A0A254Q5R0_9PROT (Class II glutamine amidotransferase n=1 Tax=Bdellovibrio sp. SKB1291214 TaxID=1732569 RepID=A0A254Q5R0_9PROT)

HSP 1 Score: 141 bits (356), Expect = 8.290e-40
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            N PTD CFSF GF+ RGGRT  H DGWG+AFFEGKG R F D LPSA SP+A L+ NYPIK+  VIAH+R ATQG V LEN HPF RELWG Y V
Sbjct:   10 NVPTDICFSFTGFKARGGRTDIHQDGWGIAFFEGKGVRQFLDPLPSAHSPVAELVRNYPIKSTNVIAHIRKATQGIVSLENTHPFMRELWGSYWV 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: UPI00191B7D75 (class II glutamine amidotransferase n=2 Tax=Ramlibacter TaxID=174951 RepID=UPI00191B7D75)

HSP 1 Score: 140 bits (353), Expect = 1.550e-39
Identity = 66/95 (69.47%), Postives = 74/95 (77.89%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            NTPTD  FSF GF +RGGRT  HVDGWG+AFFEG G R+F D  P+A SP+A LI  YPIK+R VIAH+R ATQG+V LEN HPF RELWGRY V
Sbjct:   10 NTPTDVTFSFAGFAQRGGRTDEHVDGWGIAFFEGLGLRHFVDHQPAADSPVAELIRRYPIKSRNVIAHIRKATQGQVALENCHPFVRELWGRYWV 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: UPI001FACD9DE (class II glutamine amidotransferase n=1 Tax=Variovorax sp. CYS-02 TaxID=2923278 RepID=UPI001FACD9DE)

HSP 1 Score: 140 bits (353), Expect = 1.600e-39
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            NTPTD  FSF GF ERGGRT  H DGWG+AFFEGKG R+F D  P+  SP+A LI  YPIK+R VIAH+R ATQG V LEN HPF RELWGRY V
Sbjct:   10 NTPTDVMFSFTGFAERGGRTDHHADGWGIAFFEGKGLRHFVDHQPAFESPVAGLIRRYPIKSRNVIAHIRKATQGEVALENCHPFVRELWGRYWV 104          
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Match: UPI001AC6C5FC (Glutamine amidotransferase YafJ n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=UPI001AC6C5FC)

HSP 1 Score: 140 bits (354), Expect = 1.700e-39
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1
Query:    7 NTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSALSPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV 291
            NTPTD CFSF GF++RGG T  H DGWG+AFFEGKG R F D  PSA SP+A L+ NYPI++  VIAH+R ATQG V LEN HPF RELWGRY V
Sbjct:   10 NTPTDICFSFTGFQKRGGETDVHADGWGIAFFEGKGVRLFLDPQPSAQSPVAELVRNYPIRSLNVIAHIRKATQGVVSLENTHPFQRELWGRYWV 104          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102659.445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB53_ECTSI1.630e-6295.88Glutamine amidotransferase type-2 domain-containin... [more]
A0A2X0QVD5_9PROT2.420e-4070.53Putative glutamine amidotransferases class-II n=2 ... [more]
A0A356B8I3_9GAMM5.130e-4069.15Class II glutamine amidotransferase (Fragment) n=1... [more]
UPI0019BD17155.580e-4068.42Class II glutamine amidotransferase n=1 Tax=Bdello... [more]
A0A4Z0BJM1_9BURK5.640e-4069.47Class II glutamine amidotransferase n=1 Tax=Ramlib... [more]
A0A4Q3LM83_9BURK7.980e-4069.47Class II glutamine amidotransferase n=1 Tax=Comamo... [more]
A0A254Q5R0_9PROT8.290e-4069.47Class II glutamine amidotransferase n=1 Tax=Bdello... [more]
UPI00191B7D751.550e-3969.47class II glutamine amidotransferase n=2 Tax=Ramlib... [more]
UPI001FACD9DE1.600e-3969.47class II glutamine amidotransferase n=1 Tax=Variov... [more]
UPI001AC6C5FC1.700e-3968.42Glutamine amidotransferase YafJ n=1 Tax=Rhodocycla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102659contigEcto-sp8_S_contig102659:241..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score202.6
Seed ortholog evalue8.4e-50
Seed eggNOG ortholog2880.D8LB53
Model size291
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Glutamine amidotransferases class-II
EggNOG OGs2RXQT@2759,COG0121@1
Cds size291
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.511182-CDS-Ecto-sp8_S_contig102659:240..5311681143125.511182-CDS-Ecto-sp8_S_contig102659:240..531Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102659 241..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102659.445.1prot_Ecto-sp8_S_contig102659.445.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102659 241..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102659.445.1

>prot_Ecto-sp8_S_contig102659.445.1 ID=prot_Ecto-sp8_S_contig102659.445.1|Name=mRNA_Ecto-sp8_S_contig102659.445.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=97bp
QANTPTDFCFSFRGFRERGGRTGRHVDGWGVAFFEGKGFRNFCDSLPSAL
SPIANLICNYPIKTRTVIAHVRMATQGRVRLENVHPFSRELWGRYAV
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mRNA from alignment at Ecto-sp8_S_contig102659:241..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102659.445.1 ID=mRNA_Ecto-sp8_S_contig102659.445.1|Name=mRNA_Ecto-sp8_S_contig102659.445.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=291bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102659:241..531+ (Ectocarpus species8 EcLAC_412)
CAGGCCAACACTCCGACGGACTTTTGCTTCTCGTTTCGCGGGTTCCGGGA ACGCGGGGGGCGGACGGGTCGCCACGTCGACGGGTGGGGCGTGGCCTTCT TCGAAGGGAAAGGGTTCCGAAATTTCTGCGATTCCTTGCCTAGCGCGCTG AGCCCCATCGCCAACCTGATCTGCAACTATCCGATCAAGACCCGGACGGT GATCGCCCACGTGAGGATGGCGACACAGGGCAGGGTTCGCCTTGAGAACG TGCACCCTTTCTCTAGGGAGCTTTGGGGAAGGTATGCAGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102659:241..531+

>mRNA_Ecto-sp8_S_contig102659.445.1 ID=mRNA_Ecto-sp8_S_contig102659.445.1|Name=mRNA_Ecto-sp8_S_contig102659.445.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102659:241..531+ (Ectocarpus species8 EcLAC_412)
CAGGCCAACACTCCGACGGACTTTTGCTTCTCGTTTCGCGGGTTCCGGGA
ACGCGGGGGGCGGACGGGTCGCCACGTCGACGGGTGGGGCGTGGCCTTCT
TCGAAGGGAAAGGGTTCCGAAATTTCTGCGATTCCTTGCCTAGCGCGCTG
AGCCCCATCGCCAACCTGATCTGCAACTATCCGATCAAGACCCGGACGGT
GATCGCCCACGTGAGGATGGCGACACAGGGCAGGGTTCGCCTTGAGAACG
TGCACCCTTTCTCTAGGGAGCTTTGGGGAAGGTATGCAGTC
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