mRNA_Ecto-sp8_S_contig10265.443.1 (mRNA) Ectocarpus species8 EcLAC_412
|
Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: D8LJH8_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH8_ECTSI) HSP 1 Score: 205 bits (522), Expect = 5.380e-62 Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1
Query: 1 SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCG TMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR
Sbjct: 387 SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGGTMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 491
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A2C9VPB2_MANES (Uncharacterized protein n=3 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VPB2_MANES) HSP 1 Score: 78.6 bits (192), Expect = 8.920e-15 Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1
Query: 7 QSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
+S ++ +VA + KRVV+LSGTPSLS+P+D+F+Q+ L PGLLG++ K FA +YC A R Q S G H F G +EL++LLR VMIRR
Sbjct: 331 ESNEIKAVLEVAAKVKRVVLLSGTPSLSRPYDIFHQINMLWPGLLGQS-----KYDFAKTYC-AVKRVQTSEGKHFQ--DFSKGIRL-EELNMLLRQTVMIRR 424
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A5B8MJL2_9CHLO (SNF2-like DNA helicase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJL2_9CHLO) HSP 1 Score: 77.0 bits (188), Expect = 3.080e-14 Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1
Query: 10 SQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
S+Q + V + + ++L+GTPSLSKP+DLF Q EALSPGLLG K+KQ ++ +YC T S+ ++ +SG +EL++LL N +MIRR
Sbjct: 332 SKQTEAAQMVVRKTPKAILLTGTPSLSKPYDLFAQAEALSPGLLG-----KSKQEYSKNYCERTFVKTRSKATFMS----VSGGRRLEELNVLLNNTIMIRR 424
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: I0YNI1_COCSC (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YNI1_COCSC) HSP 1 Score: 75.9 bits (185), Expect = 7.880e-14 Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 49 AKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
A R V+LSGTPSLS+P+DLF QV+AL PGLLG ++ FA YC + RGG +G Y ELH LL+ EVM+RR
Sbjct: 380 AARAVLLSGTPSLSRPYDLFRQVDALRPGLLG-----PNREAFAHRYCNRRLVPVFGRGGAQRMKWCNTGLAYAAELHALLKQEVMLRR 463
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A7S3UFA5_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFA5_9CHLO) HSP 1 Score: 75.1 bits (183), Expect = 1.470e-13 Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 1 SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
S+ +++V V +++RVV+L+GTPSLS+PFD+F QV+ L PGLLG P + F +YC G+ N+ SGS Y +ELH+LLR VMIRR
Sbjct: 462 SSLAEEVEVTASALRKSRRVVLLTGTPSLSRPFDIFLQVDLLWPGLLGCHP-----RDFGKAYCSLRWVGKED-----NKHIQTSGSLYLNELHILLRETVMIRR 556
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A7S0D381_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D381_MICPS) HSP 1 Score: 70.9 bits (172), Expect = 1.990e-13 Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 55 RVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
R V+ +GTPSL+KPFDLFNQV+AL PGLLG + K+ FA +YC + S G +R SG ELH LL EVMIRR
Sbjct: 14 RAVLCTGTPSLTKPFDLFNQVDALRPGLLGAS-----KRAFAETYCDLKLVSTTS-GPSYDR----SGGSRLQELHALLTKEVMIRR 90
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A8J9SAP0_9CHLO (Probable SWI/SNF-related matrix-associated actin-dependent rregulator of chromatin n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SAP0_9CHLO) HSP 1 Score: 74.7 bits (182), Expect = 2.020e-13 Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query: 49 AKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
A R V+LSGTP LS+P+DLF QV+AL PGLLGR ++ FA YC + + RGG + +G + ELH LL+ EVM+RR
Sbjct: 720 AARAVLLSGTPLLSRPYDLFRQVDALRPGLLGRD-----RESFAHRYCNRRLIPVVGRGGAPHMKWCNTGLAHAAELHALLKQEVMLRR 803
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A835XVZ9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVZ9_9CHLO) HSP 1 Score: 73.9 bits (180), Expect = 3.820e-13 Identity = 50/117 (42.74%), Postives = 58/117 (49.57%), Query Frame = 1
Query: 28 CRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATM-----RGQMSRGGHVNRVPFI----------------SGSEYPDELHLLLRNEVMIRR 315
C GRA+R V+LSGTPSLS+P+DL+ QV AL PGLLG + KQ FA YC M G +RGG R SG ELH LL EVM+RR
Sbjct: 1129 CCAAVGRARRAVLLSGTPSLSRPYDLYRQVHALQPGLLGAS-----KQAFALRYCDGRMVPHRLPGGAARGGWGGRXXXXXXXXEAGAPVRKRLETSGGSRLCELHGLLTREVMVRR 1240
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A3M7L3P7_AUXPR (Helicase C-terminal domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7L3P7_AUXPR) HSP 1 Score: 73.6 bits (179), Expect = 4.660e-13 Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 37 VAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
VA RA+R + L+GTPSLSKP+DLF QV+AL G+LG +Q +A YC + RGG SG +ELH LLR VM+RR
Sbjct: 35 VAKRAQRAIFLTGTPSLSKPYDLFRQVDALRQGMLG-----DTRQQYAGLYCARRIVRSRIRGGEETTHVDNSGLRRAEELHRLLRYAVMLRR 122
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: UPI000B78D51D (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78D51D) HSP 1 Score: 73.6 bits (179), Expect = 4.870e-13 Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 7 QSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
+S ++ +VA + KR+V+LSGTPSLS+P+D+F+Q+ L PGLLG+ K FA +YC A + S G H F G +EL++LLR VMIRR
Sbjct: 331 ESSEIKAVLEVAAKVKRIVLLSGTPSLSRPYDIFHQINILWPGLLGQT-----KYDFAKTYC-AVKYVRTSEGKHFQ--DFSKGIRL-EELNMLLRQTVMIRR 424 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10265.443.1 >prot_Ecto-sp8_S_contig10265.443.1 ID=prot_Ecto-sp8_S_contig10265.443.1|Name=mRNA_Ecto-sp8_S_contig10265.443.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAback to top mRNA from alignment at Ecto-sp8_S_contig10265:1002..2743+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10265.443.1 ID=mRNA_Ecto-sp8_S_contig10265.443.1|Name=mRNA_Ecto-sp8_S_contig10265.443.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1742bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10265:1002..2743+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10265:1002..2743+ >mRNA_Ecto-sp8_S_contig10265.443.1 ID=mRNA_Ecto-sp8_S_contig10265.443.1|Name=mRNA_Ecto-sp8_S_contig10265.443.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10265:1002..2743+ (Ectocarpus species8 EcLAC_412)back to top |