mRNA_Ecto-sp8_S_contig10265.443.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10265.443.1
Unique NamemRNA_Ecto-sp8_S_contig10265.443.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: D8LJH8_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH8_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 5.380e-62
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1
Query:    1 SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCG TMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR
Sbjct:  387 SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGGTMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 491          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A2C9VPB2_MANES (Uncharacterized protein n=3 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VPB2_MANES)

HSP 1 Score: 78.6 bits (192), Expect = 8.920e-15
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    7 QSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            +S ++    +VA + KRVV+LSGTPSLS+P+D+F+Q+  L PGLLG++     K  FA +YC A  R Q S G H     F  G    +EL++LLR  VMIRR
Sbjct:  331 ESNEIKAVLEVAAKVKRVVLLSGTPSLSRPYDIFHQINMLWPGLLGQS-----KYDFAKTYC-AVKRVQTSEGKHFQ--DFSKGIRL-EELNMLLRQTVMIRR 424          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A5B8MJL2_9CHLO (SNF2-like DNA helicase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJL2_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 3.080e-14
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1
Query:   10 SQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            S+Q    + V  +  + ++L+GTPSLSKP+DLF Q EALSPGLLG     K+KQ ++ +YC  T     S+   ++    +SG    +EL++LL N +MIRR
Sbjct:  332 SKQTEAAQMVVRKTPKAILLTGTPSLSKPYDLFAQAEALSPGLLG-----KSKQEYSKNYCERTFVKTRSKATFMS----VSGGRRLEELNVLLNNTIMIRR 424          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: I0YNI1_COCSC (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YNI1_COCSC)

HSP 1 Score: 75.9 bits (185), Expect = 7.880e-14
Identity = 43/89 (48.31%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   49 AKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            A R V+LSGTPSLS+P+DLF QV+AL PGLLG       ++ FA  YC   +     RGG        +G  Y  ELH LL+ EVM+RR
Sbjct:  380 AARAVLLSGTPSLSRPYDLFRQVDALRPGLLG-----PNREAFAHRYCNRRLVPVFGRGGAQRMKWCNTGLAYAAELHALLKQEVMLRR 463          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A7S3UFA5_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFA5_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 1.470e-13
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            S+ +++V V      +++RVV+L+GTPSLS+PFD+F QV+ L PGLLG  P     + F  +YC     G+       N+    SGS Y +ELH+LLR  VMIRR
Sbjct:  462 SSLAEEVEVTASALRKSRRVVLLTGTPSLSRPFDIFLQVDLLWPGLLGCHP-----RDFGKAYCSLRWVGKED-----NKHIQTSGSLYLNELHILLRETVMIRR 556          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A7S0D381_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D381_MICPS)

HSP 1 Score: 70.9 bits (172), Expect = 1.990e-13
Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   55 RVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            R V+ +GTPSL+KPFDLFNQV+AL PGLLG +     K+ FA +YC   +    S G   +R    SG     ELH LL  EVMIRR
Sbjct:   14 RAVLCTGTPSLTKPFDLFNQVDALRPGLLGAS-----KRAFAETYCDLKLVSTTS-GPSYDR----SGGSRLQELHALLTKEVMIRR 90          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A8J9SAP0_9CHLO (Probable SWI/SNF-related matrix-associated actin-dependent rregulator of chromatin n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SAP0_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 2.020e-13
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   49 AKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            A R V+LSGTP LS+P+DLF QV+AL PGLLGR      ++ FA  YC   +   + RGG  +     +G  +  ELH LL+ EVM+RR
Sbjct:  720 AARAVLLSGTPLLSRPYDLFRQVDALRPGLLGRD-----RESFAHRYCNRRLIPVVGRGGAPHMKWCNTGLAHAAELHALLKQEVMLRR 803          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A835XVZ9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVZ9_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 3.820e-13
Identity = 50/117 (42.74%), Postives = 58/117 (49.57%), Query Frame = 1
Query:   28 CRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATM-----RGQMSRGGHVNRVPFI----------------SGSEYPDELHLLLRNEVMIRR 315
            C    GRA+R V+LSGTPSLS+P+DL+ QV AL PGLLG +     KQ FA  YC   M      G  +RGG   R                    SG     ELH LL  EVM+RR
Sbjct: 1129 CCAAVGRARRAVLLSGTPSLSRPYDLYRQVHALQPGLLGAS-----KQAFALRYCDGRMVPHRLPGGAARGGWGGRXXXXXXXXEAGAPVRKRLETSGGSRLCELHGLLTREVMVRR 1240          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: A0A3M7L3P7_AUXPR (Helicase C-terminal domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7L3P7_AUXPR)

HSP 1 Score: 73.6 bits (179), Expect = 4.660e-13
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1
Query:   37 VAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            VA RA+R + L+GTPSLSKP+DLF QV+AL  G+LG       +Q +A  YC   +     RGG        SG    +ELH LLR  VM+RR
Sbjct:   35 VAKRAQRAIFLTGTPSLSKPYDLFRQVDALRQGMLG-----DTRQQYAGLYCARRIVRSRIRGGEETTHVDNSGLRRAEELHRLLRYAVMLRR 122          
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Match: UPI000B78D51D (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B78D51D)

HSP 1 Score: 73.6 bits (179), Expect = 4.870e-13
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    7 QSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRAPLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNEVMIRR 315
            +S ++    +VA + KR+V+LSGTPSLS+P+D+F+Q+  L PGLLG+      K  FA +YC A    + S G H     F  G    +EL++LLR  VMIRR
Sbjct:  331 ESSEIKAVLEVAAKVKRIVLLSGTPSLSRPYDIFHQINILWPGLLGQT-----KYDFAKTYC-AVKYVRTSEGKHFQ--DFSKGIRL-EELNMLLRQTVMIRR 424          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10265.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJH8_ECTSI5.380e-6299.05Helicase ATP-binding domain-containing protein n=1... [more]
A0A2C9VPB2_MANES8.920e-1546.60Uncharacterized protein n=3 Tax=Manihot esculenta ... [more]
A0A5B8MJL2_9CHLO3.080e-1442.16SNF2-like DNA helicase n=3 Tax=Chloropicon primus ... [more]
I0YNI1_COCSC7.880e-1448.31p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3UFA5_9CHLO1.470e-1343.81Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S0D381_MICPS1.990e-1350.57Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A8J9SAP0_9CHLO2.020e-1347.19Probable SWI/SNF-related matrix-associated actin-d... [more]
A0A835XVZ9_9CHLO3.820e-1342.74Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A3M7L3P7_AUXPR4.660e-1346.24Helicase C-terminal domain-containing protein n=2 ... [more]
UPI000B78D51D4.870e-1343.69SWI/SNF-related matrix-associated actin-dependent ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10265contigEcto-sp8_S_contig10265:1002..2743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score206.8
Seed ortholog evalue4.8e-51
Seed eggNOG ortholog2880.D8LJH8
Model size318
KEGG koko:K10876,ko:K14440
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
Cds size315
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.4339647-CDS-Ecto-sp8_S_contig10265:1001..11151681143125.4339647-CDS-Ecto-sp8_S_contig10265:1001..1115Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10265 1002..1115 +
1681143125.447087-CDS-Ecto-sp8_S_contig10265:1939..20281681143125.447087-CDS-Ecto-sp8_S_contig10265:1939..2028Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10265 1940..2028 +
1681143125.4563382-CDS-Ecto-sp8_S_contig10265:2630..27421681143125.4563382-CDS-Ecto-sp8_S_contig10265:2630..2742Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10265 2631..2742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10265.443.1prot_Ecto-sp8_S_contig10265.443.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10265 1002..2742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10265.443.1

>prot_Ecto-sp8_S_contig10265.443.1 ID=prot_Ecto-sp8_S_contig10265.443.1|Name=mRNA_Ecto-sp8_S_contig10265.443.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=105bp
SAQSQQVTVCRQVAGRAKRVVMLSGTPSLSKPFDLFNQVEALSPGLLGRA
PLLKAKQGFAASYCGATMRGQMSRGGHVNRVPFISGSEYPDELHLLLRNE
VMIRR
back to top

mRNA from alignment at Ecto-sp8_S_contig10265:1002..2743+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10265.443.1 ID=mRNA_Ecto-sp8_S_contig10265.443.1|Name=mRNA_Ecto-sp8_S_contig10265.443.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1742bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10265:1002..2743+ (Ectocarpus species8 EcLAC_412)
AGCGCGCAGTCGCAGCAGGTGACGGTGTGCAGGCAAGTGGCCGGAAGGGC TAAGAGGGTGGTCATGCTCTCCGGAACTCCTTCTCTGTCCAAGCCCTTCG ACCTCTTCAACCAGGCAAGCGGAATAACTTTGCTTTGTCTATAAGCGAGA GCACCAGCTTTTTTTTTCCCTCCCCATCCAACAACAGCAAGAAAAACAGC AAGAAATAACAAATAACAACGAAGAGCACGAACGGATAGCACAGCTGGTG TTGCGATTGTGGAGTGGCGGGTGGGAAAACGCTTGACAAAAATGGGCGGT GTGTTCTCTGCCACCCACCGTTCTAGGTAGATATCCCTCTGAAGCAGCAC CTCCGGGCGGGCGAGGAGGCGGGTTGGTTCAGCCTCCATGGGGGGGCCCT GTTGGCAGTGACATACCACCTTGAGATATGATGAGGCAAGATAAGATACT AGCGGTATCAGTTGTTGTGTGCTCTCTCTGGCGACGCCATGGGACTAGAA GGCACGAAAGAAAGCCTCGACCGTTTTCACGCACGAGAACGGACGAGGCT ACCACACCAACTCTGCTGTGTCTGTGGGTGGACACGTGCCGCTACACGCA TGCGCGTGAACCGCTGGGTTTGGCGTGCGGGACGCCGCTCCCGTACCGTG ATTTGTTCCTCCGGCTTTTACCAGCAAGAAAACCCAGGTCTTGAAGGTTG AACTACGGGATCTTGGAGGGCTATCAGAGGTAGTCCTCGCGCCTTGGAGC TTGGATTCAGAGCTGTAAAGCGAATATCATACTAATTTCTACCTCCAGGT CTCCTCTTTGAGCGCAAGCAACACGGTTCAGATACTATGCACTTGCCTGG TGGTGGCGGCGTCTGCGGTGCGTGTGGTCATTTAATGATGTGGCGTCCCC TACTTTTTTTTTTTGGTGACTTGAAAATGGAACTGAAGGTTGAGGCGCTT TCCCCGGGGCTGCTGGGCCGTGCACCCCTGCTCAAGGCAAAGCAAGGCTT CGCGGCCAGCTACTGCGGGGCAACCATGTGAGCGAAGAACGCAATGATAC GAAAAGGAATTATTCGTTTTTCTCTCGCTTTGGTATTTTCTTGGGGTCGA TTTCTGTTTCCATTGTAAGCCACAATTTTCGCGGAAAGTGAGACTCTGTA GCATGTACCCAGGAGGCTTGCGCGTTGCACGAGATCTCCCGGCGATACAT GCTTGCCCTCCTGTCGGCTGTGAAATTTAAAAGGCGCTGCGCTGCTACCG TGAGCCACCACGCCTTCTAAATTCCAGTGACATGTTTTTTGGTGGTACCG TAGGGAGCGGGCATCTTCGACGGCGTGAGCCGCGTGCCGTGCCGAGGAGA ACAACTTCGGCCGTTTTTCCATACATAACCATCTCGTCGTCTTTGCCGTT AAATGTGTTCTCCTACGCTGTCCTTTGAGACAACCTTTGTGGGGATCAGA GACAATCTTTGTGCAGATCAGTCGCAAGAGAGCAGAACCGCGACCTAAAA CTACAGGCACGGATAACAACGCGCAAGTTTGCTGCATGCACAGAGACTCG CTGGTTCTCCCGCTTTTGCTCTTCTTCAACGACGTCCTTTTTTTTTTTTG CGTGTGGTGGTATCCCTTTTGGAGGGCAGGAGGGGGCAGATGTCGAGGGG TGGGCACGTGAACCGCGTGCCGTTCATCAGCGGCAGCGAGTATCCCGACG AACTGCACCTGCTGCTAAGGAACGAGGTCATGATCAGGCGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10265:1002..2743+

>mRNA_Ecto-sp8_S_contig10265.443.1 ID=mRNA_Ecto-sp8_S_contig10265.443.1|Name=mRNA_Ecto-sp8_S_contig10265.443.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10265:1002..2743+ (Ectocarpus species8 EcLAC_412)
AGCGCGCAGTCGCAGCAGGTGACGGTGTGCAGGCAAGTGGCCGGAAGGGC
TAAGAGGGTGGTCATGCTCTCCGGAACTCCTTCTCTGTCCAAGCCCTTCG
ACCTCTTCAACCAGGTTGAGGCGCTTTCCCCGGGGCTGCTGGGCCGTGCA
CCCCTGCTCAAGGCAAAGCAAGGCTTCGCGGCCAGCTACTGCGGGGCAAC
CATGAGGGGGCAGATGTCGAGGGGTGGGCACGTGAACCGCGTGCCGTTCA
TCAGCGGCAGCGAGTATCCCGACGAACTGCACCTGCTGCTAAGGAACGAG
GTCATGATCAGGCGG
back to top