mRNA_Ecto-sp8_S_contig102648.442.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102648.442.1
Unique NamemRNA_Ecto-sp8_S_contig102648.442.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102648.442.1 vs. uniprot
Match: D7FT63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT63_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 2.360e-56
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 1 
Query:    1 MATATAAVSTTSSPHSQVPVSFMVFCPSPATSPLVFMEEWVGAGGRNRPFAEAYEVPGFGGVSVVNGNAGEDGGAIDVLEPDRLRRAFGAHVSQLRRIIGL 303
            MATATAAVSTTSSPHSQVPVSFM+FCPSPATSPLVFMEEWVGAGGRNRPFAEAYEVPGFGGVSVVN NAGEDGGAIDVLEPDRLRRAFGAHVSQLRRIIGL
Sbjct:  442 MATATAAVSTTSSPHSQVPVSFMMFCPSPATSPLVFMEEWVGAGGRNRPFAEAYEVPGFGGVSVVNSNAGEDGGAIDVLEPDRLRRAFGAHVSQLRRIIGL 542
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102648.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT63_ECTSI2.360e-5698.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102648contigEcto-sp8_S_contig102648:48..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score196.1
Seed ortholog evalue8.2e-48
Seed eggNOG ortholog2880.D7FT63
Preferred namePIGS
Model size303
KEGG koko:K05291
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016255,GO:0019538,GO:0019637,GO:0022008,GO:0030154,GO:0030176,GO:0030182,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034645,GO:0036211,GO:0042051,GO:0042052,GO:0042157,GO:0042158,GO:0042175,GO:0042461,GO:0042462,GO:0042765,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044091,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045313,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046530,GO:0048468,GO:0048513,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0071704,GO:0071840,GO:0090407,GO:0090596,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509
Exons1
EggNOG free text desc.attachment of GPI anchor to protein
EggNOG OGsKOG2459@1,KOG2459@2759
Cds size303
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.4016552-CDS-Ecto-sp8_S_contig102648:47..3501681143125.4016552-CDS-Ecto-sp8_S_contig102648:47..350Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102648 48..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102648.442.1prot_Ecto-sp8_S_contig102648.442.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102648 48..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102648.442.1

>prot_Ecto-sp8_S_contig102648.442.1 ID=prot_Ecto-sp8_S_contig102648.442.1|Name=mRNA_Ecto-sp8_S_contig102648.442.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=101bp
MATATAAVSTTSSPHSQVPVSFMVFCPSPATSPLVFMEEWVGAGGRNRPF
AEAYEVPGFGGVSVVNGNAGEDGGAIDVLEPDRLRRAFGAHVSQLRRIIG
L
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mRNA from alignment at Ecto-sp8_S_contig102648:48..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102648.442.1 ID=mRNA_Ecto-sp8_S_contig102648.442.1|Name=mRNA_Ecto-sp8_S_contig102648.442.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102648:48..350- (Ectocarpus species8 EcLAC_412)
ATGGCCACCGCCACCGCCGCCGTGTCGACGACGAGCTCGCCGCACAGCCA
GGTCCCCGTGAGCTTCATGGTGTTCTGCCCTTCGCCGGCAACCTCGCCGC
TGGTTTTCATGGAGGAGTGGGTTGGGGCCGGCGGTCGGAACCGGCCGTTT
GCAGAGGCCTACGAAGTCCCGGGCTTCGGCGGGGTGTCCGTGGTTAACGG
TAACGCGGGCGAGGACGGCGGCGCCATCGACGTCCTAGAGCCCGACCGGC
TCCGCCGGGCGTTCGGCGCCCACGTGTCTCAGCTCCGTCGGATCATCGGG
CTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102648:48..350-

>mRNA_Ecto-sp8_S_contig102648.442.1 ID=mRNA_Ecto-sp8_S_contig102648.442.1|Name=mRNA_Ecto-sp8_S_contig102648.442.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102648:48..350- (Ectocarpus species8 EcLAC_412)
ATGGCCACCGCCACCGCCGCCGTGTCGACGACGAGCTCGCCGCACAGCCA
GGTCCCCGTGAGCTTCATGGTGTTCTGCCCTTCGCCGGCAACCTCGCCGC
TGGTTTTCATGGAGGAGTGGGTTGGGGCCGGCGGTCGGAACCGGCCGTTT
GCAGAGGCCTACGAAGTCCCGGGCTTCGGCGGGGTGTCCGTGGTTAACGG
TAACGCGGGCGAGGACGGCGGCGCCATCGACGTCCTAGAGCCCGACCGGC
TCCGCCGGGCGTTCGGCGCCCACGTGTCTCAGCTCCGTCGGATCATCGGG
CTC
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