mRNA_Ecto-sp8_S_contig10263.439.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10263.439.1
Unique NamemRNA_Ecto-sp8_S_contig10263.439.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10263.439.1 vs. uniprot
Match: A0A6H5JG81_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG81_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 5.310e-36
Identity = 92/149 (61.74%), Postives = 104/149 (69.80%), Query Frame = 2 
Query:    8 SAMMATLAFAAVGLVATTTSGTGGAFVPSPSCYTSSXXXXXXXXXXXATRSSCRLRSDSRSTGAGITNGIRSRHGSSSXXXXXXTVGHSSSRTPTALMGLRRGPGGGRRDGSSSSGGETENAVRRTPGAGDGDEAAESGRSEGAPGVTG 454
            ++++ATLAF+AVGLVATTTSGTGGAFV SP+CYTS            ATR SC L S SRS G GITNG+RSRHGSSS      TVGH SSRTPTALMGLR               G+TENA+RRTPG GDG E A+SG +EGAPG+TG
Sbjct:    8 ASLVATLAFSAVGLVATTTSGTGGAFVSSPTCYTS---RRSSGSRAAATRPSCCLPSGSRSMGTGITNGVRSRHGSSSSGSSSSTVGHPSSRTPTALMGLRXXXXXXXXXXXXXXXGDTENALRRTPGTGDGGEEAQSGGNEGAPGLTG 153
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BLAST of mRNA_Ecto-sp8_S_contig10263.439.1 vs. uniprot
Match: D8LGQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ5_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-17
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  299 MGLRRGPGGGRRDGSSSSGGETENAVRRTPGAGDGDEAAESGRSEGAPGVTG 454
            MGL+RGPGGGRRDGSSSSGGETENAVRRTPG GDGDEAA+SGR+EGAPGVTG
Sbjct:    1 MGLQRGPGGGRRDGSSSSGGETENAVRRTPGTGDGDEAAQSGRNEGAPGVTG 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10263.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG81_9PHAE5.310e-3661.74GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LGQ5_ECTSI1.200e-1792.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10263contigEcto-sp8_S_contig10263:2675..3995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size455
Hectar predicted targeting categorychloroplast
Exons2
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.1991768-UTR-Ecto-sp8_S_contig10263:2674..26871681143125.1991768-UTR-Ecto-sp8_S_contig10263:2674..2687Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10263 2675..2687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.2085593-CDS-Ecto-sp8_S_contig10263:2687..28631681143125.2085593-CDS-Ecto-sp8_S_contig10263:2687..2863Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10263 2688..2863 +
1681143125.2173746-CDS-Ecto-sp8_S_contig10263:3730..39951681143125.2173746-CDS-Ecto-sp8_S_contig10263:3730..3995Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10263 3731..3995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10263.439.1prot_Ecto-sp8_S_contig10263.439.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10263 2688..3995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10263.439.1

>prot_Ecto-sp8_S_contig10263.439.1 ID=prot_Ecto-sp8_S_contig10263.439.1|Name=mRNA_Ecto-sp8_S_contig10263.439.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=147bp
MMATLAFAAVGLVATTTSGTGGAFVPSPSCYTSSSSSSSGSSRAAATRSS
CRLRSDSRSTGAGITNGIRSRHGSSSSGSSSSTVGHSSSRTPTALMGLRR
GPGGGRRDGSSSSGGETENAVRRTPGAGDGDEAAESGRSEGAPGVTG
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mRNA from alignment at Ecto-sp8_S_contig10263:2675..3995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10263.439.1 ID=mRNA_Ecto-sp8_S_contig10263.439.1|Name=mRNA_Ecto-sp8_S_contig10263.439.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1321bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10263:2675..3995+ (Ectocarpus species8 EcLAC_412)
AGAACCTTCTGCTATGATGGCCACCTTGGCCTTTGCGGCGGTAGGGCTCG
TGGCGACCACCACGTCGGGTACCGGTGGTGCTTTCGTGCCTTCTCCTAGC
TGCTACACCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCCGCGCAGCAGC
AACAAGGTCATCGTGTCGCCTGCGGAGCGATAGCCGGAGGTCAGTCAGCG
TCCAGTCTTTGCTGTTGACCGCTGTGTTTCCGTGCCGACGCGAAGCTGCA
GCCGTGTGTTTGTGCTGGCTTGTGTGTTTTGCATCATTCCCCGGCTGCGT
GCTGTCTGGAACGCAGAGTTCGCGTGTGGACCAAGAGCAACGGAGTACCG
CAGGCACGGGGGTGTCATTTGACTGTTTGGACGAGAGCCCCGCAATGTTT
TGGCCCCCTACCCTAAGCATGCGCCCGCGGTGGCGGTATGACGGCTGCTG
TGTCGCTCTTTCTAAAAGCGTCAAGAATACGTAGGTCTTGTTGGTCATGT
GACATGCGGTGTAGTCTACAGCAGTACAGAGATGGAGATGTGTTTGCAGA
CGTACCTTGTCGGGGTCTGTTCCATGCAAACAGCGAAATCTCCGAAGCAG
TACATCCCCCCCCCATCCCGCCCACCCCCAACGCTGGCGCACCCACCGTC
ATGTTGATGCTGCCTCCCTCTTCATGCCCTCATTTAAGAAAGTTGGGCGG
GCGGGGCAACAACATGCTATTTGTACAACGCCTTGTGTGGAACAATCAAT
ATTTATATACAACTTGTGTGGAACAATCAAGGGACGTGCTGTTGAAGACT
TCTCAGCTCGCGACTGGCTCTAATAGTACGTATGTCATCACAGCATCACA
GGCCCCCCCGCGCGTATTCCTCAGTAGGGAACGTCTGGTCTGTTGTGGAT
CATTCAATACATTAGAGAACCCCACCCCGCGCCCAAGCCCACAACCGAAA
ATGTGTTCAAAGCGTAGCAACCTGTCGACCACAAAACCAATGGCAAATGC
TGCAAATTCTTGATGAATGTTGTCGTCCCCGACCCCCTGAAATCACCACG
CGGTAGCACGGGAGCGGGGATCACCAACGGCATTCGATCAAGACATGGTA
GCAGCAGCAGCGGCAGCAGCAGCAGTACCGTCGGCCACTCGTCCTCTCGA
ACCCCGACGGCATTGATGGGGCTCCGGCGAGGGCCGGGGGGTGGGCGGCG
CGATGGCAGCAGCAGCAGCGGCGGGGAGACCGAAAACGCCGTCCGGAGAA
CCCCGGGGGCCGGGGACGGGGACGAAGCAGCCGAGAGCGGCAGGAGCGAG
GGGGCCCCGGGTGTCACAGGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10263:2675..3995+

>mRNA_Ecto-sp8_S_contig10263.439.1 ID=mRNA_Ecto-sp8_S_contig10263.439.1|Name=mRNA_Ecto-sp8_S_contig10263.439.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10263:2675..3995+ (Ectocarpus species8 EcLAC_412)
ATGATGGCCACCTTGGCCTTTGCGGCGGTAGGGCTCGTGGCGACCACCAC
GTCGGGTACCGGTGGTGCTTTCGTGCCTTCTCCTAGCTGCTACACCAGCA
GCAGCAGCAGCAGCAGCGGCAGCAGCCGCGCAGCAGCAACAAGGTCATCG
TGTCGCCTGCGGAGCGATAGCCGGAGCACGGGAGCGGGGATCACCAACGG
CATTCGATCAAGACATGGTAGCAGCAGCAGCGGCAGCAGCAGCAGTACCG
TCGGCCACTCGTCCTCTCGAACCCCGACGGCATTGATGGGGCTCCGGCGA
GGGCCGGGGGGTGGGCGGCGCGATGGCAGCAGCAGCAGCGGCGGGGAGAC
CGAAAACGCCGTCCGGAGAACCCCGGGGGCCGGGGACGGGGACGAAGCAG
CCGAGAGCGGCAGGAGCGAGGGGGCCCCGGGTGTCACAGGA
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