mRNA_Ecto-sp8_S_contig10261.438.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10261.438.1
Unique NamemRNA_Ecto-sp8_S_contig10261.438.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10261.438.1 vs. uniprot
Match: D8LJI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI5_ECTSI)

HSP 1 Score: 515 bits (1326), Expect = 1.600e-179
Identity = 296/340 (87.06%), Postives = 301/340 (88.53%), Query Frame = 1 
Query:    1 MSVSLNVLLDVRKPDQGLIQVVEAAGLLLGIENTGESQSPEAPVYRTLQAGFASAGNIRGSPGLAPPWTTSESSAFASGGRSPADHHHTGSLQGGFADGTRVLPPGSKTENAWSSSSGXXXXXXAVGA-AARSETNEVVHALKLAVVGVTRRLMDETRLLPLQNRTTAVLVDGSRMSLLALELAGATWKFGRFVVIHVSGEKDPSETTHGYDKEGCGGEEGFSGRCDGPEHEDATTSMGREGGGRSATAVGDEGRGACEDAGGXXXXXXDRGG----ERCERWHPGFLEAELRETCLRQLEIPEEYLELVFRSLPPDSPGTVDEVTKVIDATLAERGVEV 1005
            MSVSLNVLLDVRKPDQGLIQVVEAAGLLLGIENTGESQSPEAPVYRTLQAGFASAGNIRGSPGLAPPW TS+SSAFASGGRSPADHHHTGSLQGGFADGTRVLP GSKTENAWSSS  XXXXXX     AA+SE +EVVHALKLAVVGVTRRLMDE RLLPLQNRTTAVLVDGSRMSLLALELAGATWKFGRFVV+HVSGEKDPSETTHGYD+EGCGG EGFSGR DGPEHED TT MGREGG RS        RGACEDAG XXXXXX        ER  RWHPGFLEAELRETCLRQLEIPEE LELVFRSLPPDS G VDEVTK IDATLAERGVEV
Sbjct:    1 MSVSLNVLLDVRKPDQGLIQVVEAAGLLLGIENTGESQSPEAPVYRTLQAGFASAGNIRGSPGLAPPWATSKSSAFASGGRSPADHHHTGSLQGGFADGTRVLPSGSKTENAWSSSGXXXXXXXXXXXXAAKSEADEVVHALKLAVVGVTRRLMDEARLLPLQNRTTAVLVDGSRMSLLALELAGATWKFGRFVVVHVSGEKDPSETTHGYDEEGCGGGEGFSGRRDGPEHEDGTTEMGREGGVRS--------RGACEDAGXXXXXXXXXXXXXXXERRGRWHPGFLEAELRETCLRQLEIPEESLELVFRSLPPDSSGNVDEVTKAIDATLAERGVEV 332
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10261.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJI5_ECTSI1.600e-17987.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10261contigEcto-sp8_S_contig10261:447..3791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1014
Hectar predicted targeting categoryother localisation
Exons5
Cds size1014
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.1205962-CDS-Ecto-sp8_S_contig10261:446..5661681143125.1205962-CDS-Ecto-sp8_S_contig10261:446..566Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10261 447..566 -
1681143125.1307461-CDS-Ecto-sp8_S_contig10261:1093..14151681143125.1307461-CDS-Ecto-sp8_S_contig10261:1093..1415Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10261 1094..1415 -
1681143125.1487885-CDS-Ecto-sp8_S_contig10261:2068..25021681143125.1487885-CDS-Ecto-sp8_S_contig10261:2068..2502Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10261 2069..2502 -
1681143125.1638463-CDS-Ecto-sp8_S_contig10261:3489..35671681143125.1638463-CDS-Ecto-sp8_S_contig10261:3489..3567Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10261 3490..3567 -
1681143125.1749425-CDS-Ecto-sp8_S_contig10261:3731..37911681143125.1749425-CDS-Ecto-sp8_S_contig10261:3731..3791Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10261 3732..3791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10261.438.1prot_Ecto-sp8_S_contig10261.438.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10261 447..3791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10261.438.1

>prot_Ecto-sp8_S_contig10261.438.1 ID=prot_Ecto-sp8_S_contig10261.438.1|Name=mRNA_Ecto-sp8_S_contig10261.438.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=338bp
MSVSLNVLLDVRKPDQGLIQVVEAAGLLLGIENTGESQSPEAPVYRTLQA
GFASAGNIRGSPGLAPPWTTSESSAFASGGRSPADHHHTGSLQGGFADGT
RVLPPGSKTENAWSSSSGSGSSSAAVGAAARSETNEVVHALKLAVVGVTR
RLMDETRLLPLQNRTTAVLVDGSRMSLLALELAGATWKFGRFVVIHVSGE
KDPSETTHGYDKEGCGGEEGFSGRCDGPEHEDATTSMGREGGGRSATAVG
DEGRGACEDAGGGGGGGGDRGGERCERWHPGFLEAELRETCLRQLEIPEE
YLELVFRSLPPDSPGTVDEVTKVIDATLAERGVEVNA*
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mRNA from alignment at Ecto-sp8_S_contig10261:447..3791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10261.438.1 ID=mRNA_Ecto-sp8_S_contig10261.438.1|Name=mRNA_Ecto-sp8_S_contig10261.438.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3345bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10261:447..3791- (Ectocarpus species8 EcLAC_412)
ATGTCCGTGTCTCTTAACGTGTTGCTCGATGTTCGTAAGCCGGATCAAGG
GCTTATTCAGGTGGGGCGTGTCTAGCGACCTGGAAATATCTCACTGGTAC
GCTGCGGTGCCGCAATTATCTACAAATGCCGCGTGTCATTGCAAGATATC
AGGTCAGTTGGTCGTGTGCGCATGTTCCTGTGGGCGAGCTGCGATACCCA
TTGACCCTTGCTATATCCCAACAGGTGGTGGAGGCAGCGGGCTTGCTACT
GGGGATCGAGAACACGGGTGAAAGTCAAAGTCCTGAGGCACCTGTCTATA
GGGTAGGCGGACATTCGAGTAGCCGGGCCAGCAAGCAATTTTCGCATACA
TACTCAGATCTCTCGTACACGGTTTTCCGATGCATGTATTTTTGCGCGAA
ACTGCTGAACACATGCTGTAGGTTTGCATTGTACGGCGATTCGAGAACAG
AAGACGCAACCCGAGTAGCTGCGGCGTTTTGAGGTTGTGGTTGTTCCTTG
AAGTACGTCGCGATCATGAGAAAACAGGAACATATCGTGCCTGTCGTTCC
GATTGACCGATGCCCGTGCGTTGCACAAACTGTCCATAGACTAATTGCTC
TGGCCGCAGTAGTAGTAGTGTCATGTACGGGAAAACAATCCACTCATCTG
GCTCGCGAAAGCGGTTGTTCCAAATCACCGCGTTGGTGTTCGATGGACAG
CAGTAGTTGTCTTGGAGACATCCTACAATCTGATGGAGGGGACACACAAC
TTTATCTTTTCCTGCGCAGAAGCTCGACTGACGACGTGATCTTCTTCTTA
CCGTTCGTTTTTGCCTTTTTCACATCTATCTTCTGTACGGAACAACTATG
CGTCAGACCGTGCCTGCTGGGTCTATCTACGGATCGACCCTTCAAGTCAT
AACGCGACAACCAACCCCCGAAGTGTTGGAACGTCTGAGGTTGCTCGATC
TAGCGTCCATCAGCGATGAGGTCGCTCACGAAGTATTTTCGAAGGTAAAG
CACGGTGGGAGAGCGCTACCCGCAGATCTCGCACCTGGCGCGCAACGCTG
TTCATATGCATACGCCGCTCCTGTGCCGACAAGAGCGGAAGCAGAGACGA
TCCGGAACCGTTCGTGTAAAGATGAGAATCGTTGATTTGCAAAGAGGCAG
GCTTGTGCTCGAAGTTAAGCATGGCATATATTGTAAATCAAGCATCATCA
AACGACTCCGAACACCAATGACATCCTGTCCCCGAAACCCCGCCACGCAA
TGGAACTACATTACTGTAAACACCTCCCTCGCCCCATAGACCCTGCAAGC
GGGCTTCGCCTCTGCTGGAAACATCCGCGGCTCGCCGGGGCTAGCGCCGC
CATGGACAACAAGCGAAAGCAGCGCCTTCGCCAGCGGCGGAAGATCCCCC
GCCGACCACCACCACACGGGAAGCCTCCAAGGCGGTTTCGCCGATGGCAC
CAGGGTGCTACCCCCGGGGTCTAAGACAGAGAACGCCTGGAGCAGCAGCA
GCGGCAGCGGCAGCAGCAGCGCAGCCGTTGGAGCGGCGGCCAGGAGTGAG
ACCAACGAAGTCGTGCACGCGCTGAAGCTTGCCGTCGTGGGCGTGACGCG
GCGATTGATGGACGAGACGCGTCTTCTTCCGCTGCAGAACCGAACGACGG
CTGTACTGGTCGACGGCAGCCGCATGTCGCTCCTGGCGCTGGAGCTTGCC
GGGGCCACCTGGAAGTTCGGCAGGTGCGGTTGGACTACAGTAGTACGTGG
TGCGGGTTTGACGAGAGGTCCTAAGTTGAGGAAACGATAATAGTAGAAAC
CTCGAGTCCGTGCGTAACGAGCAAACACTGCTGTTCTGGTTTTTCTGACT
CGAGAGGGACAAAATGTCCTACCTCGGTGGTAACATGTTTTTTCTCTCTG
TTTTTTCTGTAGACTCGAGAGGAGCAAAAGGCCCGTGCCTGTTCGGGAAA
TTGGTGCTTTCGAGTGCGCACAGAGTTGCTTCTAGAAGACGCTTGTCCAG
TAATGTATGCATGAACAACCGACAGATCCGTTGAATTTCTTGGAGGACGG
TGTCCGTTGCCGCTTTGAAACGCGCTGAAACGAGCGGGGGAAGAAACCTA
ACGCTCGTTCTACAATACCCCTTCTGGTACAAAATCTTGTACAGAAGTAT
GACATTGAACACCAGACACTTCAAGGCCCAATCACTACAACATGGCGCAC
CACAAAAAAGCGCTCCAAACCATTCGTTCACCACAGCACGTTCGTGTCAT
CCCGCCGTCGGCCAAAGCTTCTGATCGTGTGTGTGACTAAACAACATTGT
ACCCACACACGAGGAGTCCTCGTCCTTATTCGTGCCGCCAAAACACACGC
CCGGAACGTTCCTCACCACGCGCCAGGTTTGTGGTCATCCACGTCAGCGG
AGAGAAGGACCCGAGCGAGACGACCCACGGCTACGACAAAGAAGGGTGCG
GTGGCGAGGAAGGCTTTTCCGGTCGCTGCGATGGGCCAGAGCACGAAGAC
GCGACAACTTCGATGGGGCGAGAAGGCGGGGGTAGGAGTGCCACAGCAGT
CGGCGACGAAGGTCGCGGCGCATGCGAGGACGCCGGTGGCGGCGGCGGCG
GCGGCGGCGACCGAGGGGGGGAGAGGTGCGAGCGGTGGCACCCGGGCTTC
CTGGAGGCCGAGCTGCGAGAGACGTGCCTCCGGCAGCTAGAGATTCCGGT
GAGATATCGCGTGGTCGGCGTTTAACAATCAAGATTTTTCGCTTGATGAT
GTGTTTGTTATGTGTACACGCTCGTTCGAGAGCCCACCCACGTGTACTGC
GATGGTGCGTGTGCTTAATCCGGCGACACTGGAGACCAAATGAAGGTGTC
GGTTCGGAGCGATTTGCGAAGAGCTCCTATCGGGTGTTGATATCGGGGGG
CCTTTCGCTGCACCTGACACCCCCATGCGTTCGTTTGGCGCCAACGCTCG
TACCTGCACGCACGACGACTCTAGTATAATAGTACCTTTTCCCAGGAGCA
CAACCATGAAAAGAGTTGGTGTGTCCGTATCCGGGTTTCTTTGCGACCGT
GGGAAAATAATATGGTATATGTTTAGAGGAAAAGAGGTATGGAGGATGTA
GTGGCTAAGTCGGTGATCTTGTTACGAGACCAACAACAACAACAACAACA
ACAACAACGACCACAACACGCGCGAGATTTCACATCGCCTGCATCCCTTG
TTCCGTTTCCCGCTTTTTGCCTCAGGAAGAGTATCTCGAGCTTGTGTTTC
GATCGCTCCCCCCAGATTCCCCGGGCACCGTTGACGAGGTCACCAAGGTC
ATTGATGCCACCCTTGCCGAGCGCGGAGTCGAGGTGAACGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10261:447..3791-

>mRNA_Ecto-sp8_S_contig10261.438.1 ID=mRNA_Ecto-sp8_S_contig10261.438.1|Name=mRNA_Ecto-sp8_S_contig10261.438.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1014bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10261:447..3791- (Ectocarpus species8 EcLAC_412)
ATGTCCGTGTCTCTTAACGTGTTGCTCGATGTTCGTAAGCCGGATCAAGG
GCTTATTCAGGTGGTGGAGGCAGCGGGCTTGCTACTGGGGATCGAGAACA
CGGGTGAAAGTCAAAGTCCTGAGGCACCTGTCTATAGGACCCTGCAAGCG
GGCTTCGCCTCTGCTGGAAACATCCGCGGCTCGCCGGGGCTAGCGCCGCC
ATGGACAACAAGCGAAAGCAGCGCCTTCGCCAGCGGCGGAAGATCCCCCG
CCGACCACCACCACACGGGAAGCCTCCAAGGCGGTTTCGCCGATGGCACC
AGGGTGCTACCCCCGGGGTCTAAGACAGAGAACGCCTGGAGCAGCAGCAG
CGGCAGCGGCAGCAGCAGCGCAGCCGTTGGAGCGGCGGCCAGGAGTGAGA
CCAACGAAGTCGTGCACGCGCTGAAGCTTGCCGTCGTGGGCGTGACGCGG
CGATTGATGGACGAGACGCGTCTTCTTCCGCTGCAGAACCGAACGACGGC
TGTACTGGTCGACGGCAGCCGCATGTCGCTCCTGGCGCTGGAGCTTGCCG
GGGCCACCTGGAAGTTCGGCAGGTTTGTGGTCATCCACGTCAGCGGAGAG
AAGGACCCGAGCGAGACGACCCACGGCTACGACAAAGAAGGGTGCGGTGG
CGAGGAAGGCTTTTCCGGTCGCTGCGATGGGCCAGAGCACGAAGACGCGA
CAACTTCGATGGGGCGAGAAGGCGGGGGTAGGAGTGCCACAGCAGTCGGC
GACGAAGGTCGCGGCGCATGCGAGGACGCCGGTGGCGGCGGCGGCGGCGG
CGGCGACCGAGGGGGGGAGAGGTGCGAGCGGTGGCACCCGGGCTTCCTGG
AGGCCGAGCTGCGAGAGACGTGCCTCCGGCAGCTAGAGATTCCGGAAGAG
TATCTCGAGCTTGTGTTTCGATCGCTCCCCCCAGATTCCCCGGGCACCGT
TGACGAGGTCACCAAGGTCATTGATGCCACCCTTGCCGAGCGCGGAGTCG
AGGTGAACGCGTAG
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