mRNA_Ecto-sp8_S_contig10259.434.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10259.434.1
Unique NamemRNA_Ecto-sp8_S_contig10259.434.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10259.434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10259contigEcto-sp8_S_contig10259:205..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_007550.1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.7851667-CDS-Ecto-sp8_S_contig10259:204..2911681143124.7851667-CDS-Ecto-sp8_S_contig10259:204..291Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10259 205..291 +
1681143124.7939959-CDS-Ecto-sp8_S_contig10259:523..6071681143124.7939959-CDS-Ecto-sp8_S_contig10259:523..607Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10259 524..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10259.434.1prot_Ecto-sp8_S_contig10259.434.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10259 205..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10259.434.1

>prot_Ecto-sp8_S_contig10259.434.1 ID=prot_Ecto-sp8_S_contig10259.434.1|Name=mRNA_Ecto-sp8_S_contig10259.434.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=57bp
MMRGFGLKGEGRRGRGGGGGGGGGGGRTLPRRWRGPQSKGSARFVPPDAR
CHAGWA*
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mRNA from alignment at Ecto-sp8_S_contig10259:205..607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10259.434.1 ID=mRNA_Ecto-sp8_S_contig10259.434.1|Name=mRNA_Ecto-sp8_S_contig10259.434.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=403bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10259:205..607+ (Ectocarpus species8 EcLAC_412)
ATGATGAGGGGCTTCGGGCTGAAGGGAGAAGGACGAAGAGGGCGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGCGAACCCTGGTAAGTCGTGCAC
CGATAGCGATCAGGTCCTCTGGTTCGCACTCCTCCTTTTTTTGGGCGTGA
GAGATGATGCTGTCCATCTCCATCAGTGGTGTATACAAGAAATAATGGTG
TCTGTCCGCACACACATCAGTTTTTTGAAAGAAAATATTTTTCTTCTTGC
TCCACGAGGGTCGCAAACGAGAGAAGTTTATCATCTCTTCTTGGCTTGGA
TGATGAACAACCCAATCAGCCCCGGCGTTGGCGTGGGCCGCAAAGCAAGG
GCTCTGCTCGTTTCGTCCCTCCGGACGCGAGGTGTCATGCTGGCTGGGCC
TAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10259:205..607+

>mRNA_Ecto-sp8_S_contig10259.434.1 ID=mRNA_Ecto-sp8_S_contig10259.434.1|Name=mRNA_Ecto-sp8_S_contig10259.434.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10259:205..607+ (Ectocarpus species8 EcLAC_412)
ATGATGAGGGGCTTCGGGCTGAAGGGAGAAGGACGAAGAGGGCGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGGCGAACCCTGCCCCGGCGTTGGC
GTGGGCCGCAAAGCAAGGGCTCTGCTCGTTTCGTCCCTCCGGACGCGAGG
TGTCATGCTGGCTGGGCCTAG
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