mRNA_Ecto-sp8_S_contig102584.433.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102584.433.1
Unique NamemRNA_Ecto-sp8_S_contig102584.433.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102584.433.1 vs. uniprot
Match: D8LK59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK59_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.450e-15
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 IQLPEILFGNNALEFRHQESGFILQFEARSALKKWVE 111
            +QLPEILFGNNALEFRHQESGFILQFE+R+ALKKWVE
Sbjct:   58 MQLPEILFGNNALEFRHQESGFILQFESRAALKKWVE 94
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BLAST of mRNA_Ecto-sp8_S_contig102584.433.1 vs. uniprot
Match: A0A836CMW7_9STRA (TIP41-like family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW7_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.110e-5
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 IQLPEILFGNNALEFRHQESGFILQFEARSALKKWV 108
            +QLPE+LFG NAL+ +H  SG +L F A  AL+ WV
Sbjct:   81 MQLPEMLFGGNALQLQHPASGLVLHFCAARALRDWV 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102584.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK59_ECTSI2.450e-1591.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMW7_9STRA5.110e-555.56TIP41-like family-domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102584contigEcto-sp8_S_contig102584:41..151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score75.1
Seed ortholog evalue7.7e-12
Seed eggNOG ortholog2880.D8LK59
Model size111
KEGG koko:K17607
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons1
EggNOG free text desc.DNA damage checkpoint
EggNOG OGsKOG3224@1,KOG3224@2759
Cds size111
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.7585108-CDS-Ecto-sp8_S_contig102584:40..1511681143124.7585108-CDS-Ecto-sp8_S_contig102584:40..151Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102584 41..151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102584.433.1prot_Ecto-sp8_S_contig102584.433.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102584 41..151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102584.433.1

>prot_Ecto-sp8_S_contig102584.433.1 ID=prot_Ecto-sp8_S_contig102584.433.1|Name=mRNA_Ecto-sp8_S_contig102584.433.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=37bp
IQLPEILFGNNALEFRHQESGFILQFEARSALKKWVE
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mRNA from alignment at Ecto-sp8_S_contig102584:41..151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102584.433.1 ID=mRNA_Ecto-sp8_S_contig102584.433.1|Name=mRNA_Ecto-sp8_S_contig102584.433.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102584:41..151+ (Ectocarpus species8 EcLAC_412)
ATACAGCTTCCTGAAATTCTCTTTGGAAACAACGCTCTGGAGTTCCGTCA
CCAAGAATCTGGGTTCATTCTTCAATTTGAAGCAAGGTCTGCCTTGAAGA
AGTGGGTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102584:41..151+

>mRNA_Ecto-sp8_S_contig102584.433.1 ID=mRNA_Ecto-sp8_S_contig102584.433.1|Name=mRNA_Ecto-sp8_S_contig102584.433.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102584:41..151+ (Ectocarpus species8 EcLAC_412)
ATACAGCTTCCTGAAATTCTCTTTGGAAACAACGCTCTGGAGTTCCGTCA
CCAAGAATCTGGGTTCATTCTTCAATTTGAAGCAAGGTCTGCCTTGAAGA
AGTGGGTGGAG
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