mRNA_Ecto-sp8_S_contig10256.430.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 234 bits (597), Expect = 1.110e-72 Identity = 125/133 (93.98%), Postives = 129/133 (96.99%), Query Frame = 2
Query: 14 LSLFY--HQTTTMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 406
LS+++ + TTTMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 34 LSVYFITNSTTTMSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 229 bits (585), Expect = 1.180e-71 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 2
Query: 44 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 409
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 214 bits (546), Expect = 1.320e-65 Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = 2
Query: 44 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 397
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 214 bits (546), Expect = 6.820e-65 Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = 2
Query: 44 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 397
MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 210 bits (535), Expect = 3.490e-64 Identity = 106/118 (89.83%), Postives = 115/118 (97.46%), Query Frame = 2
Query: 44 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 397
MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: K0T493_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T493_THAOC) HSP 1 Score: 209 bits (533), Expect = 7.640e-62 Identity = 110/124 (88.71%), Postives = 118/124 (95.16%), Query Frame = 2
Query: 29 HQTTTMSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 397
H TTTMSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKARIIPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 47 HSTTTMSGKGKGGRGEKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKARIIPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 170
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE) HSP 1 Score: 226 bits (575), Expect = 1.220e-61 Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 2
Query: 44 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVV 403
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK V
Sbjct: 1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTV 120
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA) HSP 1 Score: 203 bits (517), Expect = 5.660e-61 Identity = 106/129 (82.17%), Postives = 117/129 (90.70%), Query Frame = 2
Query: 44 MSGKGKGGRGK----KSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK*AP 418
MSGKGKGGRGK KSTTRSA+AGLQFPVGR+ RFL+KG++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RIIPRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK AP
Sbjct: 1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKKKATSSAP 129
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.080e-60 Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 2
Query: 44 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 406
MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Match: A0A2R5GVM3_9STRA (Histone H2A n=4 Tax=Labyrinthulomycetes TaxID=35131 RepID=A0A2R5GVM3_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.800e-60 Identity = 105/121 (86.78%), Postives = 112/121 (92.56%), Query Frame = 2
Query: 44 MSGKGKGGRGKK---STTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 397
MSGKGKGGRGKK +TTRSAKAGLQFPVGR+ R+LKKG YA+RVG GAPVY+AAVLEYL AE+LELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVL+P K
Sbjct: 1 MSGKGKGGRGKKGGKATTRSAKAGLQFPVGRIARYLKKGGYATRVGGGAPVYMAAVLEYLAAEILELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLMPSK 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10256.430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10256.430.1 >prot_Ecto-sp8_S_contig10256.430.1 ID=prot_Ecto-sp8_S_contig10256.430.1|Name=mRNA_Ecto-sp8_S_contig10256.430.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=123bp MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLback to top mRNA from alignment at Ecto-sp8_S_contig10256:1982..3245+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10256.430.1 ID=mRNA_Ecto-sp8_S_contig10256.430.1|Name=mRNA_Ecto-sp8_S_contig10256.430.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1264bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10256:1982..3245+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10256:1982..3245+ >mRNA_Ecto-sp8_S_contig10256.430.1 ID=mRNA_Ecto-sp8_S_contig10256.430.1|Name=mRNA_Ecto-sp8_S_contig10256.430.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10256:1982..3245+ (Ectocarpus species8 EcLAC_412)back to top |