mRNA_Ecto-sp8_S_contig10255.427.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE) HSP 1 Score: 573 bits (1477), Expect = 3.220e-198 Identity = 272/282 (96.45%), Postives = 276/282 (97.87%), Query Frame = 2
Query: 59 SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLK+NI GSGSPELFLHFKGIHKH+IPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTS SCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTR FSLDEFIMWKFEVLVSWIHQRYMWH GTLMGPSSHITVYEELQ+SH+GLIDIAGFMGLQCSEQQAAKVWIGRRHPSP GGYASRGLSVETV FMNATMARLLPPALALRWDVTPTEL
Sbjct: 17 SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIGGSGSPELFLHFKGIHKHIIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 298
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE) HSP 1 Score: 421 bits (1083), Expect = 2.510e-137 Identity = 196/301 (65.12%), Postives = 241/301 (80.07%), Query Frame = 2
Query: 2 DGFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
D FG+ GHG+SL ALGEPKSGTTWLGR+VP+LA+ELCGS NN WCQ+GG+ + PHPPA +EFELL + +G P LFLHF+G KH+IPGMDLG+P+ CRNGGRLH++ F+DLQPC S E PTR+RL SCL++T+ CV +M S DPAVRRSIV+ RDPR+VVISEY MRTQV R+ W SL+EF+ +KFEVLVSW+HQRYMWH G LMGPSSH+ Y+ELQKS VG + IA MGL+CSE QA KVW + SP+GG+A+R L T++FMNATMARLLPP++A++W +TPTEL
Sbjct: 102 DEFGERGHGLSLVALGEPKSGTTWLGRMVPSLAIELCGSENNPWCQLGGVEVFPHPPAPSYEFELLNISTP-TGRPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTEL 400
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI) HSP 1 Score: 342 bits (876), Expect = 1.020e-106 Identity = 165/301 (54.82%), Postives = 211/301 (70.10%), Query Frame = 2
Query: 5 GFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDE-MPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
G+ PG+GIS+DA GEPKSGTTWLGR+VP LAL LCG+ NN WC +GG+ ++ + PA + FE++ K +G LFLHF G KH IPGM C NGGR H +YF D PC +E PTR+RL +CL++TS CV++MPS DP VRRS+VI+RDPR+V +SE MR + W RK + D F +FE+LVSW HQRY+WH T+M PSSH+ YE+L+ H G I +A FMGL CSE+ A +VW R+P+P G Y++ GL ETV++MN TMARLLPP+LALRW VTPT+L
Sbjct: 87 GWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLVVLDNIPAPKYVFEMVNKT---AGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTSALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: D8LSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW1_ECTSI) HSP 1 Score: 328 bits (841), Expect = 6.470e-105 Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 2
Query: 2 DGFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRS 463
DGFGKPG GISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLK+NIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRS
Sbjct: 5 DGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRS 158
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE) HSP 1 Score: 338 bits (868), Expect = 1.270e-104 Identity = 162/301 (53.82%), Postives = 210/301 (69.77%), Query Frame = 2
Query: 5 GFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDE-MPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
G+ PG+GIS+DA GEPKSGTTWLGR+VP LAL LCG+ NN WC +GG+ ++ + PA + FE++ K +G LFLHF G KH IPGM C NGGR H +YF D PC +E PTR+RL +CL++TS CV++M S DP VRRS+VI+RDPR+V +SE MR + W RK + D F +FE+LVSW HQRY+WH T+M PSSH+ YE+L+ H G I +A FMGL CSE+ A +VW R+P+P G Y++ GL +ET+++MN TMARLLPP+LA RW VTPT+L
Sbjct: 153 GWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLAVLDNLPAPKYVFEMVNKT---AGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTSALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE) HSP 1 Score: 261 bits (666), Expect = 4.110e-77 Identity = 129/302 (42.72%), Postives = 181/302 (59.93%), Query Frame = 2
Query: 86 VPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDL-GVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQ-----------------------------KSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTE 901
+P LALELCGS N WC++GG+ + P P+ +EFELLK+ P LFLH+KG +KHVIPGM G P C GGR HR++F D PC S TR++L CL++TS C+ +PS RR+ V++RDPR+VV+SE+ MR +E S+D+FI +F+ +VSW HQR++WH T++ SSH+ Y++LQ + +G+ID+A FMGL+CSE QA VW ++ P G Y + GL + T+ +MNATMA LLP A++L W +TPT+
Sbjct: 1 MPQLALELCGSSTNTWCEMGGLAVYPSEPSPWYEFELLKRGTGEGSGPTLFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFFEDYPPCISGPASTREQLTGCLWNTSSRCMGFVPSES---RRTAVMLRDPRDVVLSEFRMRRDYYHQEE-VMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 298
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JS90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS90_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.060e-25 Identity = 88/189 (46.56%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 1873 WQCRMYGMGEERLPRKA*EAKRANKKNWCTNLRSELML*MTHRRGSNLTKVMH--WRG-----------EV*RGSRRIYLLLLLPREKDRIQPK---KPRTRRVSMCTE*----DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
W RM GMGEERLPR EAK ANKK R+ + KV+ W+G E +G + + RE+ ++ + K M E DYLHG PMDA TKLKVK RTG I L ERRRR R VDDEDD+ +CDCG E ED VHV+AECP YKKERE+ YMTEL
Sbjct: 85 WHYRMCGMGEERLPRIVWEAKWANKKRG--------------RQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHG-PMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDEFKCDCGFECEDRVHVVAECPLYKKEREV-YMTEL 257
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JTB2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB2_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.100e-25 Identity = 88/189 (46.56%), Postives = 105/189 (55.56%), Query Frame = 1
Query: 1873 WQCRMYGMGEERLPRKA*EAKRANKKNWCTNLRSELML*MTHRRGSNLTKVMH--WRG-----------EV*RGSRRIYLLLLLPREKDRIQPK---KPRTRRVSMCTE*----DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
WQ RM GMGEERLPR EAK ANKK R+ + KV+ W+G E +G + + RE+ ++ + K M E DYLHG PMDA TKLKVK RTG I L ERRRR R VD+EDD+ +CDCG E ED VHV+AECPWYKKERE+ Y+TEL
Sbjct: 366 WQYRMCGMGEERLPRIVWEAKWANKKRG--------------RQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHG-PMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPWYKKEREV-YVTEL 538
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5L0B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B6_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.160e-25 Identity = 87/189 (46.03%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 1873 WQCRMYGMGEERLPRKA*EAKRANKKNWCTNLRSELML*MTHRRGSNLTKVMH--WRG-----------EV*RGSRRIYLLLLLPREKDRIQPK---KPRTRRVSMCTE*----DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
WQ RM GMGEERLPR E K ANKK R+ + KV+ W+G E +G + + RE ++ K K M E DYLHG PMDA TKLKVK RTG I L ERRRR R VD+EDD+ +CDCG E ED VHV+AECPWYKKERE+ Y++EL
Sbjct: 150 WQYRMCGMGEERLPRIVREEKWANKKRG--------------RQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREAQNLKKKTKDKEGLDMYGMLKEGIGFKDYLHG-PMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPWYKKEREV-YVSEL 322
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JBW3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW3_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.440e-25 Identity = 79/171 (46.20%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 1885 MYGMGEERLPRKA*EAKRANKKN------WCTNLRSELML*MTHRRGSNLTKVMHWRGEV*RGSRRIYLLLLLPREKDRIQPKKPRTRRVSMCTE*DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
M GMGEERLPR EAK NKK W + ++ + R NL K + + +Y +L K+ I K DYLHG PMDA TKLKVK RTG I L E RRR R VDD+DD+ +CDCG E ED HV+AECPWYK+ERE+ Y+TEL
Sbjct: 1 MCGMGEERLPRIVWEAKWVNKKRVRQPTQWVKGFKKKIYVACAEREEQNLRKESKDKEGL-----EVYGML-----KEGIGFK-------------DYLHG-PMDAGTKLKVKFRTGDIGLRESRRRHRTVDDKDDEFKCDCGFECEDRAHVVAECPWYKEEREV-YVTEL 146 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10255.427.1 >prot_Ecto-sp8_S_contig10255.427.1 ID=prot_Ecto-sp8_S_contig10255.427.1|Name=mRNA_Ecto-sp8_S_contig10255.427.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=253bp MTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVback to top mRNA from alignment at Ecto-sp8_S_contig10255:1687..6917+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10255.427.1 ID=mRNA_Ecto-sp8_S_contig10255.427.1|Name=mRNA_Ecto-sp8_S_contig10255.427.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10255:1687..6917+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10255:1687..6917+ >mRNA_Ecto-sp8_S_contig10255.427.1 ID=mRNA_Ecto-sp8_S_contig10255.427.1|Name=mRNA_Ecto-sp8_S_contig10255.427.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10255:1687..6917+ (Ectocarpus species8 EcLAC_412)back to top |