mRNA_Ecto-sp8_S_contig10255.427.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10255.427.1
Unique NamemRNA_Ecto-sp8_S_contig10255.427.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 573 bits (1477), Expect = 3.220e-198
Identity = 272/282 (96.45%), Postives = 276/282 (97.87%), Query Frame = 2
Query:   59 SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
            SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLK+NI GSGSPELFLHFKGIHKH+IPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTS SCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTR FSLDEFIMWKFEVLVSWIHQRYMWH GTLMGPSSHITVYEELQ+SH+GLIDIAGFMGLQCSEQQAAKVWIGRRHPSP GGYASRGLSVETV FMNATMARLLPPALALRWDVTPTEL
Sbjct:   17 SGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIGGSGSPELFLHFKGIHKHIIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 298          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 421 bits (1083), Expect = 2.510e-137
Identity = 196/301 (65.12%), Postives = 241/301 (80.07%), Query Frame = 2
Query:    2 DGFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
            D FG+ GHG+SL ALGEPKSGTTWLGR+VP+LA+ELCGS NN WCQ+GG+ + PHPPA  +EFELL  +   +G P LFLHF+G  KH+IPGMDLG+P+ CRNGGRLH++ F+DLQPC S E PTR+RL SCL++T+  CV +M S DPAVRRSIV+ RDPR+VVISEY MRTQV  R+ W    SL+EF+ +KFEVLVSW+HQRYMWH G LMGPSSH+  Y+ELQKS VG + IA  MGL+CSE QA KVW   +  SP+GG+A+R L   T++FMNATMARLLPP++A++W +TPTEL
Sbjct:  102 DEFGERGHGLSLVALGEPKSGTTWLGRMVPSLAIELCGSENNPWCQLGGVEVFPHPPAPSYEFELLNISTP-TGRPRLFLHFQGRIKHIIPGMDLGIPLKCRNGGRLHKEGFMDLQPCDSGESPTRERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTEL 400          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 1.020e-106
Identity = 165/301 (54.82%), Postives = 211/301 (70.10%), Query Frame = 2
Query:    5 GFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDE-MPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
            G+  PG+GIS+DA GEPKSGTTWLGR+VP LAL LCG+ NN WC +GG+ ++ + PA  + FE++ K    +G   LFLHF G  KH IPGM       C NGGR H +YF D  PC  +E  PTR+RL +CL++TS  CV++MPS DP VRRS+VI+RDPR+V +SE  MR +      W RK + D F   +FE+LVSW HQRY+WH  T+M PSSH+  YE+L+  H G I +A FMGL CSE+ A +VW   R+P+P G Y++ GL  ETV++MN TMARLLPP+LALRW VTPT+L
Sbjct:   87 GWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLVVLDNIPAPKYVFEMVNKT---AGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEDTPTRERLRACLFNTSALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: D8LSW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW1_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 6.470e-105
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 2
Query:    2 DGFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRS 463
            DGFGKPG GISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLK+NIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRS
Sbjct:    5 DGFGKPGQGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKRNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRS 158          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 1.270e-104
Identity = 162/301 (53.82%), Postives = 210/301 (69.77%), Query Frame = 2
Query:    5 GFGKPGHGISLDALGEPKSGTTWLGRVVPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPVSCRNGGRLHRDYFLDLQPCASDE-MPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTEL 904
            G+  PG+GIS+DA GEPKSGTTWLGR+VP LAL LCG+ NN WC +GG+ ++ + PA  + FE++ K    +G   LFLHF G  KH IPGM       C NGGR H +YF D  PC  +E  PTR+RL +CL++TS  CV++M S DP VRRS+VI+RDPR+V +SE  MR +      W RK + D F   +FE+LVSW HQRY+WH  T+M PSSH+  YE+L+  H G I +A FMGL CSE+ A +VW   R+P+P G Y++ GL +ET+++MN TMARLLPP+LA RW VTPT+L
Sbjct:  153 GWQLPGNGISMDATGEPKSGTTWLGRLVPDLALHLCGNANNSWCGMGGLAVLDNLPAPKYVFEMVNKT---AGEGALFLHFDGNGKHYIPGMKGEPHPGCDNGGRPHENYFGDTPPCLDEEETPTRERLRACLFNTSALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDVFARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 4.110e-77
Identity = 129/302 (42.72%), Postives = 181/302 (59.93%), Query Frame = 2
Query:   86 VPALALELCGSFNNQWCQVGGMTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDL-GVPVSCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLVSWIHQRYMWHMGTLMGPSSHITVYEELQ-----------------------------KSHVGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPTE 901
            +P LALELCGS  N WC++GG+ + P  P+  +EFELLK+       P LFLH+KG +KHVIPGM   G P  C  GGR HR++F D  PC S    TR++L  CL++TS  C+  +PS     RR+ V++RDPR+VV+SE+ MR     +E      S+D+FI  +F+ +VSW HQR++WH  T++  SSH+  Y++LQ                              + +G+ID+A FMGL+CSE QA  VW   ++  P G Y + GL + T+ +MNATMA LLP A++L W +TPT+
Sbjct:    1 MPQLALELCGSSTNTWCEMGGLAVYPSEPSPWYEFELLKRGTGEGSGPTLFLHYKGSNKHVIPGMSWKGHPEGCNQGGRRHRNFFEDYPPCISGPASTREQLTGCLWNTSSRCMGFVPSES---RRTAVMLRDPRDVVLSEFRMRRDYYHQEE-VMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 298          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JS90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS90_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.060e-25
Identity = 88/189 (46.56%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 1873 WQCRMYGMGEERLPRKA*EAKRANKKNWCTNLRSELML*MTHRRGSNLTKVMH--WRG-----------EV*RGSRRIYLLLLLPREKDRIQPK---KPRTRRVSMCTE*----DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
            W  RM GMGEERLPR   EAK ANKK                R+ +   KV+   W+G           E  +G +    +    RE+  ++ +   K       M  E     DYLHG PMDA TKLKVK RTG I L ERRRR R VDDEDD+ +CDCG E ED VHV+AECP YKKERE+ YMTEL
Sbjct:   85 WHYRMCGMGEERLPRIVWEAKWANKKRG--------------RQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHG-PMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDEFKCDCGFECEDRVHVVAECPLYKKEREV-YMTEL 257          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JTB2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.100e-25
Identity = 88/189 (46.56%), Postives = 105/189 (55.56%), Query Frame = 1
Query: 1873 WQCRMYGMGEERLPRKA*EAKRANKKNWCTNLRSELML*MTHRRGSNLTKVMH--WRG-----------EV*RGSRRIYLLLLLPREKDRIQPK---KPRTRRVSMCTE*----DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
            WQ RM GMGEERLPR   EAK ANKK                R+ +   KV+   W+G           E  +G +    +    RE+  ++ +   K       M  E     DYLHG PMDA TKLKVK RTG I L ERRRR R VD+EDD+ +CDCG E ED VHV+AECPWYKKERE+ Y+TEL
Sbjct:  366 WQYRMCGMGEERLPRIVWEAKWANKKRG--------------RQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYLHG-PMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPWYKKEREV-YVTEL 538          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5L0B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B6_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.160e-25
Identity = 87/189 (46.03%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 1873 WQCRMYGMGEERLPRKA*EAKRANKKNWCTNLRSELML*MTHRRGSNLTKVMH--WRG-----------EV*RGSRRIYLLLLLPREKDRIQPK---KPRTRRVSMCTE*----DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
            WQ RM GMGEERLPR   E K ANKK                R+ +   KV+   W+G           E  +G +    +    RE   ++ K   K       M  E     DYLHG PMDA TKLKVK RTG I L ERRRR R VD+EDD+ +CDCG E ED VHV+AECPWYKKERE+ Y++EL
Sbjct:  150 WQYRMCGMGEERLPRIVREEKWANKKRG--------------RQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAEREAQNLKKKTKDKEGLDMYGMLKEGIGFKDYLHG-PMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPWYKKEREV-YVSEL 322          
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Match: A0A6H5JBW3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.440e-25
Identity = 79/171 (46.20%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 1885 MYGMGEERLPRKA*EAKRANKKN------WCTNLRSELML*MTHRRGSNLTKVMHWRGEV*RGSRRIYLLLLLPREKDRIQPKKPRTRRVSMCTE*DYLHGGPMDAETKLKVKPRTGGICL*ERRRRLRKVDDEDDKPRCDCGSEGEDHVHVLAECPWYKKEREIMYMTEL 2379
            M GMGEERLPR   EAK  NKK       W    + ++ +    R   NL K    +  +      +Y +L     K+ I  K             DYLHG PMDA TKLKVK RTG I L E RRR R VDD+DD+ +CDCG E ED  HV+AECPWYK+ERE+ Y+TEL
Sbjct:    1 MCGMGEERLPRIVWEAKWVNKKRVRQPTQWVKGFKKKIYVACAEREEQNLRKESKDKEGL-----EVYGML-----KEGIGFK-------------DYLHG-PMDAGTKLKVKFRTGDIGLRESRRRHRTVDDKDDEFKCDCGFECEDRAHVVAECPWYKEEREV-YVTEL 146          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10255.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZR3_9PHAE3.220e-19896.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE2.510e-13765.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXT7_ECTSI1.020e-10654.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSW1_ECTSI6.470e-10598.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6E2_9PHAE1.270e-10453.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLX3_9PHAE4.110e-7742.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JS90_9PHAE1.060e-2546.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB2_9PHAE1.100e-2546.56Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L0B6_9PHAE1.160e-2546.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBW3_9PHAE1.440e-2546.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10255contigEcto-sp8_S_contig10255:1687..6917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2426
Hectar predicted targeting categoryother localisation
Exons7
Cds size759
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10255.427.1prot_Ecto-sp8_S_contig10255.427.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10255 2297..5398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.4406524-UTR-Ecto-sp8_S_contig10255:1686..17361681143124.4406524-UTR-Ecto-sp8_S_contig10255:1686..1736Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10255 1687..1736 +
1681143124.4509954-UTR-Ecto-sp8_S_contig10255:1973..20551681143124.4509954-UTR-Ecto-sp8_S_contig10255:1973..2055Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10255 1974..2055 +
1681143124.460911-UTR-Ecto-sp8_S_contig10255:2280..22961681143124.460911-UTR-Ecto-sp8_S_contig10255:2280..2296Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10255 2281..2296 +
1681143124.5219166-UTR-Ecto-sp8_S_contig10255:5398..69171681143124.5219166-UTR-Ecto-sp8_S_contig10255:5398..6917Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10255 5399..6917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.4706228-CDS-Ecto-sp8_S_contig10255:2296..23981681143124.4706228-CDS-Ecto-sp8_S_contig10255:2296..2398Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10255 2297..2398 +
1681143124.4806771-CDS-Ecto-sp8_S_contig10255:3101..33101681143124.4806771-CDS-Ecto-sp8_S_contig10255:3101..3310Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10255 3102..3310 +
1681143124.490811-CDS-Ecto-sp8_S_contig10255:4402..45321681143124.490811-CDS-Ecto-sp8_S_contig10255:4402..4532Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10255 4403..4532 +
1681143124.5042188-CDS-Ecto-sp8_S_contig10255:4834..49271681143124.5042188-CDS-Ecto-sp8_S_contig10255:4834..4927Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10255 4835..4927 +
1681143124.5132022-CDS-Ecto-sp8_S_contig10255:5173..53981681143124.5132022-CDS-Ecto-sp8_S_contig10255:5173..5398Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10255 5174..5398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10255.427.1

>prot_Ecto-sp8_S_contig10255.427.1 ID=prot_Ecto-sp8_S_contig10255.427.1|Name=mRNA_Ecto-sp8_S_contig10255.427.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=253bp
MTIIPHPPASLHEFELLKKNIDGSGSPELFLHFKGIHKHVIPGMDLGVPV
SCRNGGRLHRDYFLDLQPCASDEMPTRDRLVSCLYDTSPSCVRHMPSADP
AVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRKFSLDEFIMWKFEVLV
SWIHQRYMWHMGTLMGPSSHITVYEELQKSHVGLIDIAGFMGLQCSEQQA
AKVWIGRRHPSPDGGYASRGLSVETVRFMNATMARLLPPALALRWDVTPT
EL*
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mRNA from alignment at Ecto-sp8_S_contig10255:1687..6917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10255.427.1 ID=mRNA_Ecto-sp8_S_contig10255.427.1|Name=mRNA_Ecto-sp8_S_contig10255.427.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5231bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10255:1687..6917+ (Ectocarpus species8 EcLAC_412)
AGATGGCTTCGGGAAACCTGGACACGGAATCTCTCTTGATGCGCTCGGCG GTAAGTCATGTTGCACACGTTCCCAGGTTTGGAGGGTGGACACGTTGGAA CTATGCAAATTGAGTTGAGTGAGTACGATAGGATATAACATTCTCTGAGT CAGGAACATTCGCCCCTCGGTCTCCGTTGTAGGAGCGCCACCTCTGTAGC GCGAGACTCGCTCAAACTCACTTTCGAAAAATGCTTGCTCAAATCGTATT CTCTACGTCACTCGCGTCTGTTTGAAAATTGCTCAAGAGCCCAAGAGCGG CACGACTTGGCTGGGAAGAGTTGTGCCGGCGCTTGCCCTTGAGCTGTGCG GGAGCTTCAACAACCAGTGGTGAGAACGACGTGGTTGCTGGAGACCTAGT TGCTGTTGAATGTTTTACTCCTCGCACACCTTTATAGCATTCTCTGGGTC GCTCTGTTGTGGTCACGTTGTGTTTTCCGCAGTTGTACTCTCTCGCTCAG TTTGCACTATTTATATCGACCGTCGATGTTCTTGTCATTGCGGTCACGTG GCGGTGGTGGTGGTACAATCTTCGCAATGCATTCCTACCGGTAGGTGTCA GGTTGGAGGAATGACAATCATTCCACACCCGCCTGCGTCCTTGCACGAGT TTGAATTGCTGAAGAAAAACATCGACGGAAGTGGCAGCCCCGAGCTCTTC CTCCACTTTAAGGTGAGGTCGCGACAATCACGCATGGTTATGGCGACAAT CGATGAAAGACATTGCACGTAGGGGGGGTGATTCCACACCTCTAGATTGA CTTGCAAAGTCAAACTACACACCGAGAGGTTGCAAGGAACGACCGGATGG TTCCACAGTATCATATTTTCTCTAGTGGTGGAACTCTTTTGGCTGTGGAG CAGTTGATCTGTGATGTATGGGCTACGGCATGTGTGATCGCTCGTACAGA TTGAAGTATAGAGTAAGAAATTGACCCCAAGAGGGCGTGTTTGTATCCAT CGGTATTGCTTGCCACGCAAATCTTTGTACATGATATTCTTGATCGTTAC AACGGGTTTTCATTATTGTAGACGAGCTGCTATATCGTTGCATTGAGTAC GACCTCCCTCTCCGAACTAGTACAGTAGTCGCACTGTAGTTCCAAATATG TTTTTTCTGCCGTGATTCCCGCCAAGGCGGGGAGTCATTCAGTATCGCAC ATTCAACAACAACATCAACGAACGAACTCGCTTTTTAATGTGTTTCTAGA CGCGCTTTTGAGCCTGACACGAAGTCCCTGACAGTGGTGGACCAAGTGCG TAACACAGAATATCGCAACACCGAAGCTTCGTTCCGACAAACATGCTTTC AGACTGCTTGCTTTCACGGTTTTTGCGTTTTGTTGTTTGTCTGGCGCCTG ATGGTGTTGGTGAAGGGGATTCACAAGCACGTCATCCCCGGAATGGATCT CGGAGTTCCTGTCTCCTGCCGCAATGGGGGGCGGCTTCACAGGGATTATT TTCTTGACCTTCAGCCGTGCGCATCAGATGAAATGCCAACGAGGGATCGG CTCGTTTCTTGCCTCTACGATACGTCTCCAAGCTGTGTTCGACATATGCC GAGTGCGGATCCGGCCGTTAGACGGTGAGCGGTGAAATGAATCAATCCAC GTAGTGATATTGCACCTTGAAGACTTGCTTGAGGTTGGTTCGGCACTAAC AAAGGATCTGGGGCATTGACGTACTCACATTGGCACGGCCAAGCACTTGA TAAAGTTTGCTGATTGCCTGGAATGCAATCAGATATTTTTTTTGTCCATA CTGATTCCGATTTGCATTAGCTTGGCTGCATGGAGACATATCTACTGCTG CGTTTAGCTGCCGGACAAAGGCTGTTGATACACGAGCTACTGGCTATTTG ATAAAGGCAATAGAGTTTATGCGGGCGCATGTGGTGGGCTGGAGCTTTTC TGCATTCCGCGGTTATACCTGTGTTTAATGGGGACCACCGTTTGGCGGGT TCAAAGCATGGTGCATGCGGCGACCATAGCGATGGTTTGGAGAGCGAACA ATTGAGTTGGTGTGGTTTGTCTCACACATCCCCCAAAATGGCTCGGCAGC GCCAAGCAGCTGCAAAATTGGCGTAGAGTATTTTCCCCAAGTTGATTTGT GCTATTGCTTTTGTGAGGGACCTCTATGGGCGTTTGGAAAAAACGACCAA TTTGTTGCCGGGATTCAGTGTATTCATTTCGTAAGCTGAGAATATCAGCT GCCATGGCCATCCTGGAAATAAATTTATCGGTTTCGTGGGAGTATCAGTG AATCACGTATCGGGTTCAATCCGATCAACAAATCGAAACAGAAAAACATG TATCCCCGCATGAAGTCTCATCAAAATGTATCGATAGGGCTCGGCATGCA GCAAGCGATAAATTTCCGTTGCCATGTGACTCGCCCACAGGCCAACATTC CTCATTTCTTTCGGTTTCATGTTTTTTCAATGTGCGTTCCGAGTATCAAC CTGTGCTGGCTGGCGAGTGCAGATTTTCTTCCGTTCACAGCTGGTTCTAC TCTCCGTATTTCTTGGCCCGGGCCCACGCCGATCCACAGCAGCTATCCCA GCGGGTTGCGTTCCAGCACTCACTTCGTGTTGCGGTTGGGGTGCACACCC AGCGCTTTCAAAAAAGCAGTCACAGATCAGAGCGCTTTCTCAAACCCTTG TCGATGAATCTGGCAGGTCGATCGTCATCATGCGTGATCCACGCAACGTG GTGATATCAGAGTATATGATGCGGACTCAGGTTATCGAACGAGAAAGGTG GACAAGGAAGTTTTCGTTAGACGAGTTCATTATGTGGAAGTTTGAGGTGA GCGGTGGGATAACCAGTGCATGTTGCTGGCAAGGTTGGATCGAGCTCTGC ACAAATATCAGCACATTCGACAGATTGTAAATCCGAAGCGTTTTCTTTCG GAGACGTTTTGTGACGGGCGTTTTTGCTTGTATGCGCGTTTCACGCTCGA ATGGAAACAAGATATGACGAGGTGAGCCGGGAACAGAGCATGAAACGTAC GGTGAGATAGCTGTCCCCCCCACGAGGACAGTCGATCTCAGTTGAACTGG TGCAACGTTGTGCGCTCATTTGTTCTGTGTGAATTCTTTTCCATGCAGGT CCTAGTCTCGTGGATACATCAGCGATATATGTGGCACATGGGCACGCTGA TGGGACCCTCGTCCCATATTACAGTCTACGAAGAGTTGCAGGTGTGCACA TGTTCTTTGTAGGGCCATCCGACGTCGTTATTGATTTGGTTACCCAATCC TTTCAGCCGAACACGTACGCAAGTTCCAAAATCTCAGATGCCTCGGGCAT GGTGCACTTTTCAGTTTATTGCGCTTCATCCAAAGTCTCCCGTGTTGCTT TCTCCACGGTAGATTCATGTATCCCGACGTGCCTTCTGCGCTCTGAACGA TCGTTGATCACTTCCCAACGTTAATCCCAACTCGCAGAAAAGCCACGTGG GTCTGATCGATATCGCTGGTTTCATGGGCCTTCAATGCTCGGAACAGCAG GCAGCCAAAGTGTGGATCGGTCGCAGACACCCGTCGCCTGACGGAGGCTA CGCTTCCCGCGGCCTTTCAGTAGAGACTGTCCGTTTCATGAACGCAACAA TGGCGAGGCTCCTTCCTCCAGCCCTAGCTCTTCGATGGGATGTTACACCG ACCGAACTCTGAAACAAGGGAGCGCTAGGTCTAGATTGCGCCCGTTATCG AGAGTTGGGGGATGGCTGTCAATGAGATTGGCGTTGCGATGTTGTACACG TCTCCCCCCGTGTTTTTGTCCGGAATTCCGACATGCGGAGATTGCTCAAT CCTCGGTTTCGCGTCACTGGCCAGGCGTAGAATTTGCATTGTACTAAACC CACGCCGTTTCGCAGATGGGTTGGTGCGTGGTTGTGGGTCTGCAGTATGA CGTTGCAATGCCGGCCTATGGTGATCTCAGCCACATCAAAACGCTGATCA GATCACACGCGACAGCAAGAGCAACAGAGGTAGCTGGAAGGGAGTATGGA CAGCATGGTACACACACCTACAGATAGAGCCACGCCCAAATAAGCCGCCA GTTTCAGTAGTTTTGTGCATTGAGGCATTGAGCCATTGAGGCATTTTTTC ATAAAGGCAGGAGATAGATGTATCTGAACCTCTTGCTATGTGTATTTGAC ATATCAGCAGGGGTAACACAGAGCATATGTTGATCCCCACATTTATTTTC TCCGCGGTATTTGTGTTTTATCGCGAGAAGGATTCGAAGTGTGTATGCTC ACCAAAGAAATCGTTGTGCACTGCAATTTGGAGGCAAAGAAATACTTCCA GCGAGAGAATCGAACCCACAACCTGTCATTCTACTGTATATCGATGGAAA TAAATACAGAACGCGCCACCACTTAAGAACCGCTTATTTAGCTTGAGGCT CGACGCTTACTGGTTACCTCCAACCGAGCACATGTTCTTATTTTCCAAGT TCTTATTTGGAGCAGGTCCACCTATGGTACCTATGGTAAACGAGGTTGTT CTTGTTCTTGTTTCTAAACCGATTGCCGTATGCAGAGGACACAGACGGGT CTTTCTGCATGGATTCGTCACGAGACACAATTGTACTGCTGTAAGAGTAC AATGTAGCCGTAAAATCGCCCCCTAGGTGGCAGTGCCGCATGTACGGTAT GGGAGAGGAGAGGTTGCCAAGAAAGGCTTAGGAGGCGAAGAGGGCAAACA AGAAGAATTGGTGTACCAACCTACGGAGTGAGTTAATGTTGTAGATGACG CATCGAAGGGGGTCCAATTTGACAAAGGTGATGCACTGGAGAGGGGAGGT CTAGAGGGGTTCAAGGAGAATATATCTGTTGTTGCTTTTGCCGAGAGAGA AGGACAGGATCCAACCAAAGAAACCAAGGACACGGAGGGTCTCGATGTGT ACGGAATAGGATTACCTACATGGAGGGCCAATGGATGCAGAGACAAAGCT GAAGGTCAAACCTAGGACTGGGGGTATTTGTCTTTGAGAACGTAGACGAA GATTGAGGAAGGTAGACGATGAAGACGACAAACCCAGGTGTGATTGCGGC TCCGAGGGCGAAGACCATGTTCATGTACTTGCGGAATGTCCGTGGTACAA GAAGGAGAGGGAAATAATGTACATGACGGAGCTAGCTGGGGAAAACAGTA GAAGGAAAAAGTACAGAAAGAAAGACGATTG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10255:1687..6917+

>mRNA_Ecto-sp8_S_contig10255.427.1 ID=mRNA_Ecto-sp8_S_contig10255.427.1|Name=mRNA_Ecto-sp8_S_contig10255.427.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10255:1687..6917+ (Ectocarpus species8 EcLAC_412)
ATGACAATCATTCCACACCCGCCTGCGTCCTTGCACGAGTTTGAATTGCT
GAAGAAAAACATCGACGGAAGTGGCAGCCCCGAGCTCTTCCTCCACTTTA
AGGGGATTCACAAGCACGTCATCCCCGGAATGGATCTCGGAGTTCCTGTC
TCCTGCCGCAATGGGGGGCGGCTTCACAGGGATTATTTTCTTGACCTTCA
GCCGTGCGCATCAGATGAAATGCCAACGAGGGATCGGCTCGTTTCTTGCC
TCTACGATACGTCTCCAAGCTGTGTTCGACATATGCCGAGTGCGGATCCG
GCCGTTAGACGGTCGATCGTCATCATGCGTGATCCACGCAACGTGGTGAT
ATCAGAGTATATGATGCGGACTCAGGTTATCGAACGAGAAAGGTGGACAA
GGAAGTTTTCGTTAGACGAGTTCATTATGTGGAAGTTTGAGGTCCTAGTC
TCGTGGATACATCAGCGATATATGTGGCACATGGGCACGCTGATGGGACC
CTCGTCCCATATTACAGTCTACGAAGAGTTGCAGAAAAGCCACGTGGGTC
TGATCGATATCGCTGGTTTCATGGGCCTTCAATGCTCGGAACAGCAGGCA
GCCAAAGTGTGGATCGGTCGCAGACACCCGTCGCCTGACGGAGGCTACGC
TTCCCGCGGCCTTTCAGTAGAGACTGTCCGTTTCATGAACGCAACAATGG
CGAGGCTCCTTCCTCCAGCCCTAGCTCTTCGATGGGATGTTACACCGACC
GAACTCTGA
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