mRNA_Ecto-sp8_S_contig102546.425.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102546.425.1
Unique NamemRNA_Ecto-sp8_S_contig102546.425.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102546.425.1 vs. uniprot
Match: UPI001ADB4FF0 (hypothetical protein n=1 Tax=Qipengyuania flava TaxID=192812 RepID=UPI001ADB4FF0)

HSP 1 Score: 62.8 bits (151), Expect = 1.660e-10
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 YENMPVEELYALTSGNVSKKRAFTARDIILHNEDKVRDCIAKGYSKAETAAIISQDPRNTAKASAILREMNKALGSWRDLKK 246
            Y ++P++ L      +  + +A + + ++  +E +V  C+A GY KA TAAI+++ P NTA  ++I R MN   GSW  LK+
Sbjct:   21 YNDLPLDVLAKRAGLHEKRPKALSCKQVLRLSEKRVMQCLAAGYDKAMTAAIVAEHPLNTASLASIERTMNDVFGSWTALKR 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102546.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001ADB4FF01.660e-1035.37hypothetical protein n=1 Tax=Qipengyuania flava Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102546contigEcto-sp8_S_contig102546:277..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.366875-CDS-Ecto-sp8_S_contig102546:276..5131681143124.366875-CDS-Ecto-sp8_S_contig102546:276..513Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102546 277..513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.376771-UTR-Ecto-sp8_S_contig102546:513..5221681143124.376771-UTR-Ecto-sp8_S_contig102546:513..522Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig102546 514..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102546.425.1prot_Ecto-sp8_S_contig102546.425.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102546 277..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102546.425.1

>prot_Ecto-sp8_S_contig102546.425.1 ID=prot_Ecto-sp8_S_contig102546.425.1|Name=mRNA_Ecto-sp8_S_contig102546.425.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=79bp
MPVEELYALTSGNVSKKRAFTARDIILHNEDKVRDCIAKGYSKAETAAII
SQDPRNTAKASAILREMNKALGSWRDLKK
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mRNA from alignment at Ecto-sp8_S_contig102546:277..522-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102546.425.1 ID=mRNA_Ecto-sp8_S_contig102546.425.1|Name=mRNA_Ecto-sp8_S_contig102546.425.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102546:277..522- (Ectocarpus species8 EcLAC_412)
TATGAAAATATGCCGGTGGAGGAGCTTTATGCTTTGACCTCAGGCAACGT
TAGCAAGAAACGAGCGTTCACCGCTCGCGACATTATTCTCCATAACGAGG
ATAAGGTGCGTGACTGCATAGCGAAGGGATACTCAAAAGCGGAAACGGCC
GCGATTATCTCTCAGGATCCCAGAAATACAGCAAAAGCTTCCGCGATATT
GCGAGAAATGAACAAGGCGCTGGGGTCCTGGCGCGACCTCAAAAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102546:277..522-

>mRNA_Ecto-sp8_S_contig102546.425.1 ID=mRNA_Ecto-sp8_S_contig102546.425.1|Name=mRNA_Ecto-sp8_S_contig102546.425.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102546:277..522- (Ectocarpus species8 EcLAC_412)
ATGCCGGTGGAGGAGCTTTATGCTTTGACCTCAGGCAACGTTAGCAAGAA
ACGAGCGTTCACCGCTCGCGACATTATTCTCCATAACGAGGATAAGGTGC
GTGACTGCATAGCGAAGGGATACTCAAAAGCGGAAACGGCCGCGATTATC
TCTCAGGATCCCAGAAATACAGCAAAAGCTTCCGCGATATTGCGAGAAAT
GAACAAGGCGCTGGGGTCCTGGCGCGACCTCAAAAAG
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