mRNA_Ecto-sp8_S_contig10252.421.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10252.421.1
Unique NamemRNA_Ecto-sp8_S_contig10252.421.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10252.421.1 vs. uniprot
Match: A0A6H5JSR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 8.680e-60
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2 
Query:  179 MVSSVPAPDRGGGTAGGGGRKDKAHGIPRSSFMQVPLSMQSEQLSRGRKVFEELSSYAKDKFQIEDMTARGLLRAGQLGAAAENEVAGGSLQQGLLILRHFSATESRQH 505
            MVSSVPAPDRGGGTAGGGGRKDKAHGIPRSSFMQVPLSMQSEQLSRGRKVFEELSSYAKDKFQIEDMTARGLLRAGQLGAAAENEVAGGSLQQGLLILRHFSATESRQH
Sbjct:    1 MVSSVPAPDRGGGTAGGGGRKDKAHGIPRSSFMQVPLSMQSEQLSRGRKVFEELSSYAKDKFQIEDMTARGLLRAGQLGAAAENEVAGGSLQQGLLILRHFSATESRQH 109
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10252.421.1 vs. uniprot
Match: D7G383_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G383_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.980e-48
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 2 
Query:  179 MVSSVPAPDRGGGTAGGGGRKDKAHGIPRSSFMQVPLSMQSEQLSRGRKVFEELSSYAKDKFQIEDMTARGLLRAGQLGAAAENE 433
            MVSSVPAPDRGGGTAGGGGRKDKAHGIPRSSFMQVPLSMQSEQLSRGRKVFEELSSYAKDKFQIEDMTARGLLRAGQLGAAAENE
Sbjct:    1 MVSSVPAPDRGGGTAGGGGRKDKAHGIPRSSFMQVPLSMQSEQLSRGRKVFEELSSYAKDKFQIEDMTARGLLRAGQLGAAAENE 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10252.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSR7_9PHAE8.680e-60100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G383_ECTSI1.980e-48100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10252contigEcto-sp8_S_contig10252:829..3968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size507
Hectar predicted targeting categoryother localisation
Exons5
Cds size327
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10252.421.1prot_Ecto-sp8_S_contig10252.421.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10252 2016..3968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.1799476-UTR-Ecto-sp8_S_contig10252:828..9621681143124.1799476-UTR-Ecto-sp8_S_contig10252:828..962Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10252 829..962 +
1681143124.188204-UTR-Ecto-sp8_S_contig10252:1971..20151681143124.188204-UTR-Ecto-sp8_S_contig10252:1971..2015Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10252 1972..2015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.1968794-CDS-Ecto-sp8_S_contig10252:2015..21171681143124.1968794-CDS-Ecto-sp8_S_contig10252:2015..2117Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10252 2016..2117 +
1681143124.2047346-CDS-Ecto-sp8_S_contig10252:2670..27441681143124.2047346-CDS-Ecto-sp8_S_contig10252:2670..2744Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10252 2671..2744 +
1681143124.212749-CDS-Ecto-sp8_S_contig10252:3264..33431681143124.212749-CDS-Ecto-sp8_S_contig10252:3264..3343Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10252 3265..3343 +
1681143124.221903-CDS-Ecto-sp8_S_contig10252:3896..39681681143124.221903-CDS-Ecto-sp8_S_contig10252:3896..3968Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10252 3897..3968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10252.421.1

>prot_Ecto-sp8_S_contig10252.421.1 ID=prot_Ecto-sp8_S_contig10252.421.1|Name=mRNA_Ecto-sp8_S_contig10252.421.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=109bp
MVSSVPAPDRGGGTAGGGGRKDKAHGIPRSSFMQVPLSMQSEQLSRGRKV
FEELSSYAKDKFQIEDMTARGLLRAGQLGAAAENEVAGGSLQQGLLILRH
FSATESRQH
back to top

mRNA from alignment at Ecto-sp8_S_contig10252:829..3968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10252.421.1 ID=mRNA_Ecto-sp8_S_contig10252.421.1|Name=mRNA_Ecto-sp8_S_contig10252.421.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3140bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10252:829..3968+ (Ectocarpus species8 EcLAC_412)
GTTGTTTGTTGTGTGTTTGGTGCCACAGCCTAGAGTGGCGGAGAGCCGGG
CTTGCTAGGCAGCGCCGCCGGCGGGTGCGTGCTGACAAGGAAGTGGGGTG
GCGTGTGGTCTATCGGATTTATCGGATAAGGTGCGCGAACTTGTGTTTCC
CTTGTTTTCTGAACGTGAATTCTAATGTCAAAGTTACCAAGTTTGCGCCC
ATTTTTGTCACGCAGTAAAATCGTAGTCGTGTCATGTTCTCTCAACATGA
CCGAATGACGAAAGGCTTGGTGTGATGTGTTCTCTGGGTTGTCGGGTTGA
AATAGGGGAGCTAGAGCGCCCTGTTGGGAAAACCGGACGATGATGGCAAC
GCCACCAGCCACGTCAATTGAGAGCGTCTAGGAATTGTCTTGGGTGATGC
CGAGATTCACGACATATCTGCTGCTGTAAGCACGAGTACATTGCCCTGAC
ATTCAACCGCACCAACGCACGCTCAGCTGTCTGTGCACAGCTCTATCTTT
GGTACGCATATGTAGAACGCACGCGTTGTGTTTGTTTGTTTCCAACCTTG
TGGGGGTGGGTCTTGGTGGGCTCTCAGGCTTTCGTGTCAGGCTTTCGTGG
CAGGAGGGCAGCAATGACAACATATCGCCCGGTCAAGAGTAGGACATTCT
GTAGGACCTCACAGTACGGTAGTAGTCACTGGTGTGCCAAACTGCGCTCA
AGGGGTCGGACAGCGGACAGAACGGTAGAGACGAGTACAGCGTGGATAGT
AGATTACGAAGTACTTCGTATTGGACAACAAACAATTCTCCCCCCTCCAA
TATCGTGGTTTGTTATGTTACGGCGTTGGTCCCTCGCTCCGTTCGTGTGC
TGCTACAACAAGGCTACACAGGCCTACGGCGGGGTGTTAGTGCTGGGGGC
ATGCATGGGGCTGCTGTTAGCGTGGGAAATCGTGAACCGTGCACAGAGGG
GAGGGACGCTTTTTGCGGCAATCCCGGCGTTACGATCGAGAGCAAAACAT
GCCGGGAAACCATGAGTCCTGTTAGTGTAGTTACACGCGGAAGCTGGCTG
TTGTTGTTCACGGCCTGCATGATGCGGATGACCCTCAACCCCCCCTTTTG
TCTCCCACTCTGCGTGTTCCCACGGGACCATCATCACACATAGGAGCAAG
ATTCTGCTATAGAGGGGCTTCGTACGGCACGTCGGCGATGGTTTCTTCTG
TCCCCGCCCCCGACAGAGGGGGAGGCACTGCCGGGGGTGGGGGCAGGAAG
GACAAGGCGCACGGCATACCCCGGTCTTCCTTTATGCAGGTATTGTAGGT
GGTACGTATTGGGTGTTCACGATGCTATCTATCCCTGCATCAGTACAGTA
GCCTTACCGAGTATGTCAAGCTTGGTTGTTAGTAGGGATTTACGGGTTAA
GGTTAGGGTTGCGAAACCCCCCTCTCTATTTTGCACATACACAGTAGCTT
CTGATCCTCGCGGAGGCGGTCTCCCTGCATCTACATTATCTCCCCGACCA
GGATGTCTCAGGGAGTTGATGTGTAGTACTCGACGTGATGTGATTTCGCC
AGGCGATATCGCGGGGGGCTCGGACTGAAGCCTCGCTTGTCGATTTTCTC
CAATCTTGAAACATTGTTCTACGTTTAAACGTTGTAACCGCAGAATGTCC
TATTCCCACCTGGTAGGGGTAAATTGATGTCTTCGTCGTGCTGGAGGACT
CGTTTTTGGGTTATTTTCGCCTTTTCCCACTTATATTGTTGGTTTTTTGC
GATTTGCTGCGTGTACATGCATACGACCTCCGAAATTTTGGGCTCAACCC
CCCATGACACGCGTACTTGTGCTTGCCGACGCGCTTGAGCAGGTCCCTCT
GTCGATGCAGAGCGAGCAGCTGTCGAGGGGGAGGAAGGTCTTCGAGGAGC
TGTCGTCCTATGCAAAGTGAGCTAAATAGATAACTTTCCCAGGCGTTCGC
CTAGCCATACCCCACTGGTACTGTAGCTGTCGTTCGACTCCCCTTGCATC
GTCTTCGCCCCTTACGCGTTCCTGTGCTCTTGACTCGACACCCGTTTGGC
GTATCAGGCTGCGCAGTTGCGGCTGCCTCGGATCGAAGGGGCGTGTGGGT
GCCAGGGCGTTGTTGCAACAGTAGTTGCCAATCTGGCCGGGCAGGTCGTG
GGGTCTGTACAGTGCCCGCGTGAGAGAAGGGTGTTGCCAGGGGGAAATTG
ATAACTCCGAATTTCTCTGTCTGCCGTCCGTGTCAAGAATCTGTCACCTC
GTTTCTCCTGAACGGGATTTGTGTGTCCTCCATCCGGGTCTTGCGTACGT
ACGTGTTCTCGTCTCGGTAAAGCAGGGGGCAGCACTCACCCAGCAGCCCG
CACGCCATATTACCGTTTTGTTCCTCACTTCACCCCCTGTCGTGCGTGTC
CGTGTTGTCTTGTCCAATTCTCCAATTCTCCAACAGGGACAAGTTTCAGA
TCGAGGACATGACCGCGCGCGGGCTGCTTCGCGCCGGTCAGTTGGGTGCT
GCTGCGGAGAACGAGGTGTGTTTTTGTGCGTGAGGCGTACCGTTGGTTGC
GCAGGATTCCGCCATGGACGGTGGTGGTAATTGGCTGGGGTTCGTTGATG
CATTTTTTCTCTTCGATGGAAGTAGGAGCTGGTTAGAGGTATGTTAGGTA
TGAAGGGCAGTACCGATTGCTTTGGTTTGGTCGATGCGCTGATAAGAGGT
ACTCCTACTTGTACATTTGTTTTGTTTTGGTATGCTAGTTTGCTTTCGAC
AACGATGAAACTATGAGTGCGCTTGGTCTCTCCGTAAAATCGAAGAAATG
GGCTTGAAACGAAGAACTAGATGTTCACGGACGCCCGTCAGACGAGACCA
AGGCTCGCCTTTGAGCTCGATGACAACTGCCTTCGTGCGATACACAAGCC
ACCACATTGCTCACGTCTATATCTGCTAGTGTCGAGGTGTACTCGGCCCC
CATCCCCGCACCCCCACGTACGCCAAACCTCAAGCAATGCGCCTACCCCC
CCCCCTCCCCGCGCAATGTCTCTACGAACACCCGCTCACCTGGCCACACT
TGCTCGTTTGAACATCAGGTCGCTGGGGGGAGCCTCCAGCAGGGCTTGTT
GATCTTGAGGCATTTTTCGGCCACCGAGAGTCGGCAGCAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10252:829..3968+

>mRNA_Ecto-sp8_S_contig10252.421.1 ID=mRNA_Ecto-sp8_S_contig10252.421.1|Name=mRNA_Ecto-sp8_S_contig10252.421.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10252:829..3968+ (Ectocarpus species8 EcLAC_412)
ATGGTTTCTTCTGTCCCCGCCCCCGACAGAGGGGGAGGCACTGCCGGGGG
TGGGGGCAGGAAGGACAAGGCGCACGGCATACCCCGGTCTTCCTTTATGC
AGGTCCCTCTGTCGATGCAGAGCGAGCAGCTGTCGAGGGGGAGGAAGGTC
TTCGAGGAGCTGTCGTCCTATGCAAAGGACAAGTTTCAGATCGAGGACAT
GACCGCGCGCGGGCTGCTTCGCGCCGGTCAGTTGGGTGCTGCTGCGGAGA
ACGAGGTCGCTGGGGGGAGCCTCCAGCAGGGCTTGTTGATCTTGAGGCAT
TTTTCGGCCACCGAGAGTCGGCAGCAT
back to top