mRNA_Ecto-sp8_S_contig102509.418.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102509.418.1
Unique NamemRNA_Ecto-sp8_S_contig102509.418.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 9.330e-31
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 1
Query:   10 STGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            + GVFLD ALERLGLN+RERCDMVT WLPQLESS FNVIYFV+VERYE+AARLT+ P PDV IR+FMAFR
Sbjct:  343 AAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFR 412          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.360e-28
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1
Query:   58 MRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            MRERCDMVTYWLPQLESSAFNVIYFV+VERYEKAARLT+ PAPDV IRIFMAFR
Sbjct:    1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFR 54          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: A0A2V2CDL3_9FIRM (Uncharacterized protein n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A2V2CDL3_9FIRM)

HSP 1 Score: 75.1 bits (183), Expect = 6.260e-15
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 PRPSTGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            P P T  FL+ AL +LGL   E  + + YWLPQ+E +A+N+I F   + Y  AA+LT+ P PD ++R+FMA++
Sbjct:  104 PGPETAAFLENALAQLGLTRTEANEFIIYWLPQMEQNAYNLISFQS-DAYTDAAKLTITPQPDTLLRVFMAWK 175          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: A0A1Q6RH43_9FIRM (Uncharacterized protein n=3 Tax=Oscillospiraceae TaxID=216572 RepID=A0A1Q6RH43_9FIRM)

HSP 1 Score: 73.9 bits (180), Expect = 1.680e-14
Identity = 32/69 (46.38%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   13 TGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            T  FL+ AL +LGL  RE  + + YWLPQ++ + +N+I F   +RY +AA+LT+ PAPD ++R+FMA++
Sbjct:  106 TAAFLEDALAQLGLTRREANEFIVYWLPQMQENPYNLIAFQS-DRYTQAAKLTIDPAPDTLLRVFMAWK 173          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: UPI001F47E5A1 (hypothetical protein n=1 Tax=Pseudoflavonifractor phocaeensis TaxID=1870988 RepID=UPI001F47E5A1)

HSP 1 Score: 73.2 bits (178), Expect = 3.260e-14
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   22 FLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            FL+ AL +LGL  RE  + + YWLPQLES+ +N+I F   E Y   ARL+V PAPD+++R+FMA++
Sbjct:  108 FLEDALAQLGLTRREANEFIVYWLPQLESNPYNLISFQG-EAYTSHARLSVTPAPDILLRVFMAWK 172          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: A0A174QBY5_FLAPL (Uncharacterized protein n=1 Tax=Flavonifractor plautii TaxID=292800 RepID=A0A174QBY5_FLAPL)

HSP 1 Score: 71.2 bits (173), Expect = 5.460e-14
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   13 TGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            T  FL+ AL+RLGL  RE  + + YWLP+LE + +N++ F   E Y  +A LT+ PAPD +IR+F+A++
Sbjct:   44 TAAFLEDALDRLGLTEREADEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWK 111          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: A0A4R0RJ76_9APHY (Uncharacterized protein n=1 Tax=Steccherinum ochraceum TaxID=92696 RepID=A0A4R0RJ76_9APHY)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-13
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   22 FLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFRWV 225
            +LD  L  LGL++  R D +TYWLP L    +  + FV  E YE+AA LTV+PAPDV++R+FM F+ V
Sbjct:  334 YLDACLRALGLHVAARSDFITYWLPSLLKHEYVALRFVPQESYEQAAPLTVSPAPDVVVRVFMIFQGV 401          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: A0A1Y3WXB7_9FIRM (Uncharacterized protein n=5 Tax=unclassified Flavonifractor TaxID=2629267 RepID=A0A1Y3WXB7_9FIRM)

HSP 1 Score: 71.6 bits (174), Expect = 1.430e-13
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   10 STGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            +T  FL+GAL RLGL  +E  + + YWLP++E + +N+I F   E Y  +A+LT+ PAPD +IR+FMA++
Sbjct:  110 NTADFLEGALARLGLTEQEANEFIIYWLPKMEHNPYNLISFQQ-ETYTNSAQLTIDPAPDTLIRVFMAWQ 178          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: A0A8H3DYU7_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3DYU7_9AGAM)

HSP 1 Score: 73.2 bits (178), Expect = 1.930e-13
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    1 PRPSTGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAF 216
            PR     ++D  L  LGL+   R   +TYWLP L   AF  + F+    YEKAA LT+APAPDV  R+FM F
Sbjct:  295 PRDKVTAYIDDVLLALGLHAEARTSFITYWLPDLSKHAFIALRFLPQNEYEKAAPLTIAPAPDVTTRVFMLF 366          
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Match: R6AXV6_9CLOT (Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 TaxID=1262775 RepID=R6AXV6_9CLOT)

HSP 1 Score: 72.8 bits (177), Expect = 2.720e-13
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   13 TGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERYEKAARLTVAPAPDVMIRIFMAFR 219
            T  FL+ ALE+LGLN RE  + + +WLP +E + +NVI F   + Y +AA+L V PAPD +IR+FMA++
Sbjct:  340 TAAFLETALEKLGLNRREANEFIVFWLPLMEQNPYNVISF-QADCYTQAAKLEVEPAPDTVIRVFMAWQ 407          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102509.418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI9.330e-3181.43Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FJP3_ECTSI2.360e-2892.59Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
A0A2V2CDL3_9FIRM6.260e-1545.21Uncharacterized protein n=1 Tax=Clostridia bacteri... [more]
A0A1Q6RH43_9FIRM1.680e-1446.38Uncharacterized protein n=3 Tax=Oscillospiraceae T... [more]
UPI001F47E5A13.260e-1451.52hypothetical protein n=1 Tax=Pseudoflavonifractor ... [more]
A0A174QBY5_FLAPL5.460e-1446.38Uncharacterized protein n=1 Tax=Flavonifractor pla... [more]
A0A4R0RJ76_9APHY1.070e-1350.00Uncharacterized protein n=1 Tax=Steccherinum ochra... [more]
A0A1Y3WXB7_9FIRM1.430e-1347.14Uncharacterized protein n=5 Tax=unclassified Flavo... [more]
A0A8H3DYU7_9AGAM1.930e-1347.22Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
R6AXV6_9CLOT2.720e-1349.28Uncharacterized protein n=1 Tax=Clostridium sp. CA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102509contigEcto-sp8_S_contig102509:54..278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score122.1
Seed ortholog evalue1.1e-25
Seed eggNOG ortholog2880.D7G4B4
Model size225
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
Cds size225
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.0848458-CDS-Ecto-sp8_S_contig102509:53..2781681143124.0848458-CDS-Ecto-sp8_S_contig102509:53..278Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102509 54..278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102509.418.1prot_Ecto-sp8_S_contig102509.418.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102509 54..278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102509.418.1

>prot_Ecto-sp8_S_contig102509.418.1 ID=prot_Ecto-sp8_S_contig102509.418.1|Name=mRNA_Ecto-sp8_S_contig102509.418.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=75bp
PRPSTGVFLDGALERLGLNMRERCDMVTYWLPQLESSAFNVIYFVDVERY
EKAARLTVAPAPDVMIRIFMAFRWV
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mRNA from alignment at Ecto-sp8_S_contig102509:54..278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102509.418.1 ID=mRNA_Ecto-sp8_S_contig102509.418.1|Name=mRNA_Ecto-sp8_S_contig102509.418.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102509:54..278- (Ectocarpus species8 EcLAC_412)
CCGCGTCCTTCGACAGGCGTGTTCCTCGACGGTGCCCTGGAGCGCCTCGG GCTTAACATGCGGGAGCGCTGCGATATGGTCACCTACTGGCTGCCGCAGC TGGAGTCATCCGCCTTCAACGTCATCTACTTCGTGGACGTAGAGCGGTAC GAGAAGGCGGCCCGTTTGACCGTTGCGCCTGCTCCGGATGTCATGATCCG CATCTTCATGGCCTTCAGGTGGGTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102509:54..278-

>mRNA_Ecto-sp8_S_contig102509.418.1 ID=mRNA_Ecto-sp8_S_contig102509.418.1|Name=mRNA_Ecto-sp8_S_contig102509.418.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102509:54..278- (Ectocarpus species8 EcLAC_412)
CCGCGTCCTTCGACAGGCGTGTTCCTCGACGGTGCCCTGGAGCGCCTCGG
GCTTAACATGCGGGAGCGCTGCGATATGGTCACCTACTGGCTGCCGCAGC
TGGAGTCATCCGCCTTCAACGTCATCTACTTCGTGGACGTAGAGCGGTAC
GAGAAGGCGGCCCGTTTGACCGTTGCGCCTGCTCCGGATGTCATGATCCG
CATCTTCATGGCCTTCAGGTGGGTC
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