mRNA_Ecto-sp8_S_contig102502.417.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102502.417.1
Unique NamemRNA_Ecto-sp8_S_contig102502.417.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: D7FI31_ECTSI (Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI31_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.710e-48
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 QGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            +GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR
Sbjct:   65 KGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 148
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A7I6MWH2_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Phytopythium sindhum TaxID=795340 RepID=A0A7I6MWH2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.800e-29
Identity = 49/83 (59.04%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:    4 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            GLKGA++YYDGQMND R+++ +ALTATQ GA +AN VKV  L+KD+ G+ +GA V+D++TG++W++ AKAV+NATG F D++R
Sbjct:   46 GLKGALVYYDGQMNDTRMNVSIALTATQNGAAVANYVKVVNLIKDDEGKVRGARVRDSLTGDEWDIKAKAVVNATGPFTDSLR 128
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A7M3S7F7_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Lagenidium giganteum TaxID=4803 RepID=A0A7M3S7F7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.070e-28
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 QGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            +GLKGA++YYDGQMND R++L +ALTATQ GA + N V V  L+KD+ G+ +GA V+DT+TGE+W++ A AV+NATG F D IR
Sbjct:   30 EGLKGAVVYYDGQMNDTRMNLSIALTATQNGAAVTNYVHVVSLIKDDEGKIRGAHVRDTLTGEEWDIKAHAVVNATGPFTDGIR 113
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A7I6N0C7_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Pythium monospermum TaxID=92964 RepID=A0A7I6N0C7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.920e-28
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    1 QGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            +GLKGA++YYDGQMND R+++ V LTATQ GA   N ++V  L+KDENG+  GA V+DT+TGE+W++ AKAV+NATG F D IR
Sbjct:   37 EGLKGAVVYYDGQMNDTRMNMSVVLTATQNGAAAGNYIRVEKLLKDENGKLCGAHVKDTLTGEEWDIKAKAVVNATGPFTDGIR 120
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: M4C1M0_HYAAE (Glycerol-3-phosphate dehydrogenase n=25 Tax=Peronosporaceae TaxID=4777 RepID=M4C1M0_HYAAE)

HSP 1 Score: 114 bits (286), Expect = 6.530e-28
Identity = 53/83 (63.86%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    4 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            GLKGAI+YYDGQMND R+++ +ALTATQ GA +AN VKV  L+KDE G+ +GA VQ+T+TG++W+V A AV+NATG F D+IR
Sbjct:  215 GLKGAIVYYDGQMNDTRMNVSIALTATQNGATVANYVKVVQLLKDEEGKVRGARVQNTLTGDEWDVKAHAVVNATGPFTDSIR 297
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A7M3S7F5_9STRA (Mitochondrial glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Globisporangium heterothallicum TaxID=2708265 RepID=A0A7M3S7F5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.700e-27
Identity = 49/84 (58.33%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 QGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            +GLKGA++YYDGQMND R+++ +ALTA+Q GA + N VKV  L+KD+ G+ +GA V+DT+TGE+W+V A +V+NATG F D IR
Sbjct:   49 EGLKGAVVYYDGQMNDTRMNVSIALTASQNGATVCNYVKVERLIKDDEGKVRGAHVKDTLTGEEWDVKAHSVVNATGPFTDGIR 132
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A0P1AVA1_PLAHL (Glycerol-3-phosphate dehydrogenase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVA1_PLAHL)

HSP 1 Score: 113 bits (282), Expect = 2.300e-27
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 QGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            +GLKGAI+YYDGQMND R+++ +ALTATQ GA +AN V+V  L+KDE G+ +GA V+DT+TGE+W + A AV+NATG F D IR
Sbjct:  213 EGLKGAIVYYDGQMNDTRMNVSIALTATQNGATVANYVEVMHLLKDEEGKVRGAHVKDTLTGEEWNIKAHAVVNATGPFTDTIR 296
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A835ZCY6_9STRA (Glycerol-3-phosphate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY6_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.420e-27
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    4 GLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKD-ENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            GLKGA+IYYDGQMND R+SL +ALTATQ GA +A+RV+   L+KD  +G+  GA ++D  TGE+W V A AV+NATGCF DA+R
Sbjct:  218 GLKGAVIYYDGQMNDTRMSLTIALTATQSGAAVASRVRAVSLIKDARSGRVAGARLRDETTGEEWSVTASAVVNATGCFADAVR 301
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A4D9CPV7_9STRA (Glycerol-3-phosphate dehydrogenase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPV7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.450e-27
Identity = 55/85 (64.71%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 QGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDEN-GQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            +GLKGAIIYYDGQMND R+ L +ALTA Q+GA IANRV+V  L+KD   GQ  GA VQD +TG +W++AAK V+NATG F D IR
Sbjct:  240 KGLKGAIIYYDGQMNDTRMGLTIALTAAQEGAAIANRVEVVSLLKDPGTGQVNGARVQDRLTGVEWDIAAKVVVNATGVFADKIR 324
[Close]
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Match: A0A2P4XJ11_9STRA (Glycerol-3-phosphate dehydrogenase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJ11_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.660e-27
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 QGLKGAIIYYDGQMNDARLSLVVALTAT--QQGACIANRVKVTGLVKDENGQTKGATVQDTITGEKWEVAAKAVINATGCFCDAIR 252
            +GLKGAI+YYDGQMND R+++ +ALTAT  Q GA +AN VKV  L+KD+ G+ +GA V+DTITGE+W+V A AV+NATG F D +R
Sbjct:  213 EGLKGAIVYYDGQMNDTRMNVSIALTATATQNGATVANYVKVVHLLKDDEGKVRGAHVKDTITGEEWDVKAHAVVNATGPFTDTLR 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102502.417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI31_ECTSI3.710e-4898.81Glycerol-3-phosphate dehydrogenase n=1 Tax=Ectocar... [more]
A0A7I6MWH2_9STRA4.800e-2959.04Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7M3S7F7_9STRA1.070e-2859.52Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A7I6N0C7_9STRA2.920e-2860.71Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
M4C1M0_HYAAE6.530e-2863.86Glycerol-3-phosphate dehydrogenase n=25 Tax=Perono... [more]
A0A7M3S7F5_9STRA1.700e-2758.33Mitochondrial glycerol-3-phosphate dehydrogenase (... [more]
A0A0P1AVA1_PLAHL2.300e-2761.90Glycerol-3-phosphate dehydrogenase n=1 Tax=Plasmop... [more]
A0A835ZCY6_9STRA2.420e-2761.90Glycerol-3-phosphate dehydrogenase n=1 Tax=Tribone... [more]
A0A4D9CPV7_9STRA2.450e-2764.71Glycerol-3-phosphate dehydrogenase n=3 Tax=Monodop... [more]
A0A2P4XJ11_9STRA2.660e-2761.63Glycerol-3-phosphate dehydrogenase (Fragment) n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102502contigEcto-sp8_S_contig102502:10..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.4
Seed ortholog evalue8.1e-25
Seed eggNOG ortholog4792.ETI46979
Model size252
KEGG rclassRC00029
KEGG koko:K00111
KEGG ReactionR00848
KEGG Pathwayko00564,ko01110,map00564,map01110
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.C-terminal domain of alpha-glycerophosphate oxidase
EggNOG OGs3Q7YZ@4776,COG0578@1,KOG0042@2759
EC1.1.5.3
Cds size252
COG Functional cat.C
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.047777-CDS-Ecto-sp8_S_contig102502:9..1341681143124.047777-CDS-Ecto-sp8_S_contig102502:9..134Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102502 10..134 +
1681143124.0577836-CDS-Ecto-sp8_S_contig102502:386..5131681143124.0577836-CDS-Ecto-sp8_S_contig102502:386..513Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102502 387..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102502.417.1prot_Ecto-sp8_S_contig102502.417.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102502 10..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102502.417.1

>prot_Ecto-sp8_S_contig102502.417.1 ID=prot_Ecto-sp8_S_contig102502.417.1|Name=mRNA_Ecto-sp8_S_contig102502.417.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=84bp
QGLKGAIIYYDGQMNDARLSLVVALTATQQGACIANRVKVTGLVKDENGQ
TKGATVQDTITGEKWEVAAKAVINATGCFCDAIR
back to top

mRNA from alignment at Ecto-sp8_S_contig102502:10..513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102502.417.1 ID=mRNA_Ecto-sp8_S_contig102502.417.1|Name=mRNA_Ecto-sp8_S_contig102502.417.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102502:10..513+ (Ectocarpus species8 EcLAC_412)
CAGGGGTTGAAGGGTGCGATCATCTACTACGACGGTCAGATGAACGATGC
CCGATTGAGCCTTGTCGTGGCACTGACGGCGACGCAGCAGGGCGCGTGCA
TCGCCAACAGAGTCAAGGTCACGGGGTGAGACGCAGGGGGGGGGGGGGAG
ACCGACAAACAGACAAACAGACACACAGAGAGAGAGAGAGAGGGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAAGAGAATAGAGACATCAAAACCTACCG
TAAAATGTAATTGATCGCACATACCCTTCGACCGACCTTCACCTCTCGGC
TGTCATAGAGGTTGTCGGTGCCTGTAACCATCTCTTCTATTATTATATGG
AGTATGTTGAAATAATTGTTTTGTCAGGCTTGTCAAGGATGAGAACGGCC
AGACGAAGGGGGCGACGGTGCAGGACACGATAACGGGGGAGAAGTGGGAG
GTGGCGGCGAAGGCCGTCATCAACGCGACCGGCTGCTTCTGCGACGCGAT
ACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102502:10..513+

>mRNA_Ecto-sp8_S_contig102502.417.1 ID=mRNA_Ecto-sp8_S_contig102502.417.1|Name=mRNA_Ecto-sp8_S_contig102502.417.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102502:10..513+ (Ectocarpus species8 EcLAC_412)
CAGGGGTTGAAGGGTGCGATCATCTACTACGACGGTCAGATGAACGATGC
CCGATTGAGCCTTGTCGTGGCACTGACGGCGACGCAGCAGGGCGCGTGCA
TCGCCAACAGAGTCAAGGTCACGGGGCTTGTCAAGGATGAGAACGGCCAG
ACGAAGGGGGCGACGGTGCAGGACACGATAACGGGGGAGAAGTGGGAGGT
GGCGGCGAAGGCCGTCATCAACGCGACCGGCTGCTTCTGCGACGCGATAC
GG
back to top