mRNA_Ecto-sp8_S_contig102501.416.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102501.416.1
Unique NamemRNA_Ecto-sp8_S_contig102501.416.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: D7G6S7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6S7_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.280e-60
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    7 KVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            +VAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   28 QVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 110
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: A0A7S2Y0P1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0P1_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.800e-59
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    4 SKVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            S   PRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLS+AFGCCGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   19 SSNVPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSVAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 102
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: A0A7S1BRM9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRM9_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.090e-57
Identity = 81/85 (95.29%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 SSKVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            SS  A RFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   43 SSVPAKRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGACGHVFHLDCIQRWLKTRSVCPLCNK 127
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: A0A7S3K273_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K273_9STRA)

HSP 1 Score: 181 bits (460), Expect = 4.510e-57
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:   16 PRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            P+FEIKKWNA+ MWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   62 PKFEIKKWNAICMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 141
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: A0A4D9CQ35_9STRA (RING-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ35_9STRA)

HSP 1 Score: 180 bits (457), Expect = 7.040e-57
Identity = 78/85 (91.76%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:    1 SSKVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            S   APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC HVFHLDCIQRWLK RSVCPLCNK
Sbjct:   38 SGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNK 122
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: A0A1Z5J6S6_FISSO (RING-box protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6S6_FISSO)

HSP 1 Score: 178 bits (452), Expect = 2.220e-56
Identity = 79/85 (92.94%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 SSKVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            S   APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   19 SKPSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNK 103
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: B7G7T1_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7T1_PHATC)

HSP 1 Score: 178 bits (452), Expect = 3.360e-56
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 1 
Query:    1 SSKVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            +S  APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   32 ASGSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNK 116
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: A0A1E7FMU3_9STRA (Ring-box protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMU3_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.810e-56
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:   13 APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   29 APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNK 109
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: A0A7S3PD50_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD50_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.200e-56
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:   13 APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWLKTRSVCPLCNK
Sbjct:   32 APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNK 112
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BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Match: B8C3J2_THAPS (RING-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3J2_THAPS)

HSP 1 Score: 177 bits (448), Expect = 9.330e-56
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:   13 APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNK 255
            APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSP N+NGLSIAFG CGHVFHLDCIQRWL+TRSVCPLCNK
Sbjct:   25 APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLRTRSVCPLCNK 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102501.416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6S7_ECTSI4.280e-6098.80RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2Y0P1_9STRA7.800e-5995.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1BRM9_9STRA4.090e-5795.29Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3K273_9STRA4.510e-5796.25Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A4D9CQ35_9STRA7.040e-5791.76RING-type domain-containing protein n=3 Tax=Monodo... [more]
A0A1Z5J6S6_FISSO2.220e-5692.94RING-box protein 1 n=2 Tax=Fistulifera solaris Tax... [more]
B7G7T1_PHATC3.360e-5692.94Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FMU3_9STRA3.810e-5696.30Ring-box protein n=1 Tax=Fragilariopsis cylindrus ... [more]
A0A7S3PD50_9STRA4.200e-5696.30Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8C3J2_THAPS9.330e-5695.06RING-type domain-containing protein n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102501contigEcto-sp8_S_contig102501:27..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score188.3
Seed ortholog evalue1.5e-45
Seed eggNOG ortholog2880.D7G6S7
Preferred nameRBX1
Model size273
KEGG koko:K03868
KEGG Pathwayko03420,ko04066,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05200,ko05211,map03420,map04066,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05200,map05211
KEGG ModuleM00379,M00380,M00381,M00382,M00383,M00384,M00385,M00386,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000151,GO:0000152,GO:0000165,GO:0000209,GO:0000278,GO:0000715,GO:0001666,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009628,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010265,GO:0010389,GO:0010468,GO:0010498,GO:0010556,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010948,GO:0010972,GO:0016043,GO:0016055,GO:0016310,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019788,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030162,GO:0030163,GO:0030178,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031334,GO:0031461,GO:0031462,GO:0031463,GO:0031464,GO:0031465,GO:0031466,GO:0031467,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033554,GO:0033683,GO:0034097,GO:0034450,GO:0034622,GO:0034641,GO:0035361,GO:0035556,GO:0036211,GO:0036293,GO:0036294,GO:0042176,GO:0042221,GO:0042769,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043618,GO:0043620,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045116,GO:0045732,GO:0045786,GO:0045862,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060090,GO:0060255,GO:0060828,GO:0061136,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070482,GO:0070498,GO:0070555,GO:0070647,GO:0070887,GO:0070911,GO:0071310,GO:0071345,GO:0071347,GO:0071453,GO:0071456,GO:0071704,GO:0071824,GO:0071840,GO:0080008,GO:0080090,GO:0090090,GO:0090304,GO:0090305,GO:0097602,GO:0140096,GO:0198738,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1905114,GO:1990234,GO:2000058,GO:2000060,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.NEDD8 transferase activity
EggNOG OGsCOG5194@1,KOG2930@2759
EC2.3.2.32
Cds size273
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143123.9989793-CDS-Ecto-sp8_S_contig102501:26..1701681143123.9989793-CDS-Ecto-sp8_S_contig102501:26..170Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102501 27..170 -
1681143124.0225165-CDS-Ecto-sp8_S_contig102501:405..5341681143124.0225165-CDS-Ecto-sp8_S_contig102501:405..534Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102501 406..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102501.416.1prot_Ecto-sp8_S_contig102501.416.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102501 27..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102501.416.1

>prot_Ecto-sp8_S_contig102501.416.1 ID=prot_Ecto-sp8_S_contig102501.416.1|Name=mRNA_Ecto-sp8_S_contig102501.416.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=91bp
SSKVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNN
ENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKVRRKP*
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mRNA from alignment at Ecto-sp8_S_contig102501:27..534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102501.416.1 ID=mRNA_Ecto-sp8_S_contig102501.416.1|Name=mRNA_Ecto-sp8_S_contig102501.416.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102501:27..534- (Ectocarpus species8 EcLAC_412)
TCGTCGAAGGTGGCTCCCCGGTTCGAGATCAAGAAGTGGAACGCGGTGGC
CATGTGGTCGTGGGACATCTGCGCCGACACGTGCGCCATCTGCCGCAACA
GCCTCAACGAGCCCAGCATTGAGTACCAGGTGATGCACCTCATCCTAGGC
TTTCGTCTGTCTGTCCGACTCTGTTAAATATCGGGAATATAGATATACTT
GGAAGTATTTTCGTTGCGGCGGTCAGGGTCGTACGAACCAGTGGTCATGT
CAAGGTTCATGGGCGTCAAGCTCAGACCCTGGCACTCCGTTTAGCGAGAT
ACTCCCGGGCCCTGATCCATACCCGTTTTCGTCCTCTTGTGCTACGTACG
GTTACCGCAAACAGGCGAACCCGTCGCCAAACAACGAGAACGGGCTATCG
ATCGCGTTCGGCTGCTGCGGTCACGTGTTCCACCTCGACTGCATCCAGCG
ATGGCTCAAGACCCGCTCCGTGTGCCCCCTGTGCAACAAGGTGCGCCGCA
AGCCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102501:27..534-

>mRNA_Ecto-sp8_S_contig102501.416.1 ID=mRNA_Ecto-sp8_S_contig102501.416.1|Name=mRNA_Ecto-sp8_S_contig102501.416.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102501:27..534- (Ectocarpus species8 EcLAC_412)
TCGTCGAAGGTGGCTCCCCGGTTCGAGATCAAGAAGTGGAACGCGGTGGC
CATGTGGTCGTGGGACATCTGCGCCGACACGTGCGCCATCTGCCGCAACA
GCCTCAACGAGCCCAGCATTGAGTACCAGGCGAACCCGTCGCCAAACAAC
GAGAACGGGCTATCGATCGCGTTCGGCTGCTGCGGTCACGTGTTCCACCT
CGACTGCATCCAGCGATGGCTCAAGACCCGCTCCGTGTGCCCCCTGTGCA
ACAAGGTGCGCCGCAAGCCTTGA
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