mRNA_Ecto-sp8_S_contig10249.411.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10249.411.1
Unique NamemRNA_Ecto-sp8_S_contig10249.411.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: D8LC84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC84_ECTSI)

HSP 1 Score: 820 bits (2118), Expect = 2.760e-276
Identity = 605/785 (77.07%), Postives = 616/785 (78.47%), Query Frame = 1 
Query:    1 TAVERRQRQEIEGLKATIERAKLDAEAAKKKSRASERRLQQQIKGGAERVAELEGQVSFLERQRVDVWASATGGGGGTLGGTGGRPSRASVVAPNVSRSMNDSVRKSLNGAGKARAGGGRSRVATVTLSAEAEPAREAGSRRLAERGHDQEPRKHEEATAARRQDGGGAAWERGGDVDVREEETRGFGEGGMIVARERXXXXXX--HYYEPSVRNGARSGIYQYQKEDDRGEQHRWSRQAGXXXXXXXXXXXXXXXXXXXXXGRHVDGRTSRG----------------------------------------------------------------------DGHQRDGEVLVGDEAGLGGDEGNLIKRANGGDELGSSWGGVRRSTARVSSSDGFKYDPMRYEMAPGSDPRVHPHEGGLRSSSIGDGRQSMAALDRTSALRRSDAPGGGGMRTGSSAGDHHYHPRQLRENPRGDQDSAAAAMGDARGRNGNAGGDGDSRLDPHERRELNGTRGEEGDSAIAGGXXXXXXX-NGSLERGEHDAAAGAMRIAGQAHEGGRGPVTEREEKARGHGSAGAPGANVQPPAAAXXXXXXXXXXX-AARSLPTGSXXXXXXXGGKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEDVTSSSSASSSKPFGPSRGGVHRIHH 2133
            TAVERRQRQEIEGLKATIERAKLD EAAKKKSRASERRLQQQIKGGAERVAELEGQVSFLERQRVDVWASATGGG GTLGGTGGRPSRASVV P VSRSMND VRKS NG+ KARAGG RSRVATVTLSAEAEPAR AGSRR AERGHDQEPRKHEEATAAR QDGGGAAWE                          XXX     HYYEPSVRNGARSG+YQYQ+EDDRGEQHRWSRQAGXXXXXXXXXXXXXXXXXX   GRHV+GRTSRG                                                                      +GHQRDGEVLVGD+AG GG E N I+RAN GDELGSSWGGVRRSTARVSSSDGFKYDPMRYEMAPGSDPRV+PHEGG+RSSS GDGR SMAALDRTS LRRSDA                YHPRQ RENPR DQDSAAAAMGDARGRN NAGGDG SRLDPHERRE+NGTRGEEGDSAIAG XXXXXXX NGSLERGEHDA AGA RIAG AHEGGRGPVTEREE+ARGHGSAGAPGANVQP AA      X X    AARSLPTGS       GGKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXX RV GETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEDVTSSSSASSSKPFGPSRGGVHRIHH
Sbjct:  928 TAVERRQRQEIEGLKATIERAKLDTEAAKKKSRASERRLQQQIKGGAERVAELEGQVSFLERQRVDVWASATGGGSGTLGGTGGRPSRASVVTPAVSRSMNDGVRKSSNGSAKARAGGARSRVATVTLSAEAEPARGAGSRRPAERGHDQEPRKHEEATAARGQDGGGAAWEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDGGRHYYEPSVRNGARSGLYQYQEEDDRGEQHRWSRQAGXXXXXXXXXXXXXXXXXX---GRHVNGRTSRGGVPWRADGDDTRLDHRNAGAGRWATSRVHGGAARPPSDDVQVARFHDQQPGQRQEWEHADARISSRGGGVEGHQRDGEVLVGDKAGPGGGEVNGIERANDGDELGSSWGGVRRSTARVSSSDGFKYDPMRYEMAPGSDPRVYPHEGGVRSSSSGDGRPSMAALDRTSVLRRSDAGXXXXXXXXXXXXXXXYHPRQFRENPRDDQDSAAAAMGDARGRNDNAGGDGGSRLDPHERREVNGTRGEEGDSAIAGXXXXXXXXVNGSLERGEHDAPAGATRIAGHAHEGGRGPVTEREEEARGHGSAGAPGANVQPAAAGEAATAXFXGSSGAARSLPTGSGGSGSGSGGKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXKRVGGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEDVTSSSSASSSKPFGPSRGGVHRIHH 1709
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: A0A6H5KA73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA73_9PHAE)

HSP 1 Score: 766 bits (1977), Expect = 4.910e-255
Identity = 600/822 (72.99%), Postives = 617/822 (75.06%), Query Frame = 1 
Query:    1 TAVERRQRQEIEGLKATIERAKLDAEAAKKKSRASERRLQQQIKGGAERVAELEGQVSFLERQRVDVWASATGGGGGTLGGTGGRPSRASVVAPNVSRSMNDSVRKSLNGAGKARAGGGRSRVATVTLSAEAEPAREAGSRRLAERGHDQEPRKHEEATAARRQDGGGAAWERGGDVDVREEETRGFGEGGMIVARERXXXXXXHYYEPSVRNGARSGIYQYQKED----DRGEQHRWSRQAGXXXXXXXXXXXXXXXXXXXXX-------------------------------------GRHVDGRTSRG----------------------------------------------------------------------DGHQRDGEVLVGDEAGLGGDEGNLIKRANGGDELGSSWGGVRRSTARVSSSDGFKYDPMRYEMAPGSDPRVHPHEGGLRSSSIGDGRQSMAALDRTSALRRSDAPGGGGMRTGSSAGDHHYHPRQLRENPRGDQDSAAAAMGDARGRNGNAGGDGDSRLDPHERRELNGTRGEEGDSAIAGGXXXXXXXNGSLERGEHDAAAGAMRIAGQAHEGGRGPVTEREEKARGHGSAGAPGANVQPPAAAXXXXXXXXXXXAARSLPTGSXXXXXXXGGKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEDVTSSSSASSSKPFGPSRGGVHRIHH 2133
            TAVERRQRQEIEGLKATIERAKLDAEAAKKKSRASERRLQQQIKGGAER+AELEGQVSFLERQRVDVWASATGGG GTLGGTGGRPSRASVVAP VSRSMND VRKS NGAGKARAGG RSRVATVTLSAEAEPAR AGSRR AERGH Q+PRK +EATAARRQDGGG AWERGGD DVREE T+GFGEGG+ V RER      HYYEPSVRNGARSGIYQ           G + R  R   XXXXXXXXXXXXXXXXXXXXX                                     GRHVDGRT+RG                                                                      +GHQRDGEVLVGD+AG GGDEG  I RANGGDELGSSWGGVRRSTARVSSSDGFKYDPMRYEMAPGSD RV+PH+GG+RS S GDGRQSMAALDRTSALRRSDA                 H RQ R+NPR +QDSAAA MGDARGRNG+AGGDGDSRLDPHERRELN TRG EGDSA AGG       NGSLERGE D AAGA RIAG A EGGRGPVTERE KAR  GSAGAPGANVQPP   XXXXXXXXXXX         XXXXXXX GKVEHVLRDGRR+ILFANGTQKETXXXXXXXXXXXXXXXXRVEGETG+VIYTYAAARTTHTMHPSGLEVFEFPNGQVERHHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEDVTSSSSASSSKPFGPSRG VHRIHH
Sbjct:  921 TAVERRQRQEIEGLKATIERAKLDAEAAKKKSRASERRLQQQIKGGAERIAELEGQVSFLERQRVDVWASATGGGSGTLGGTGGRPSRASVVAPAVSRSMNDGVRKSSNGAGKARAGGARSRVATVTLSAEAEPARGAGSRRPAERGHGQDPRK-QEATAARRQDGGGTAWERGGDEDVREEGTKGFGEGGVTVVRERRQDGGGHYYEPSVRNGARSGIYQQVVAMVGAIPAGRRRRRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEEEXXXXXXXXXXXXGRHVDGRTNRGGVPWRADGGDTRLDHSKAGGGRWATSRVHGGAARPPSDNVQVPRYHDQQPGQRQEWEHADARISSRGGGVEGHQRDGEVLVGDKAGPGGDEGKGIARANGGDELGSSWGGVRRSTARVSSSDGFKYDPMRYEMAPGSDLRVYPHQGGVRSRSSGDGRQSMAALDRTSALRRSDAGXXXXXXXXXXXXXXXDHRRQFRDNPREEQDSAAA-MGDARGRNGSAGGDGDSRLDPHERRELNDTRGGEGDSATAGGGGG----NGSLERGERDPAAGATRIAGHAREGGRGPVTEREGKAREQGSAGAPGANVQPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKVEHVLRDGRRIILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGIVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHHKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEDVTSSSSASSSKPFGPSRGRVHRIHH 1736
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: K7F556_PELSI (Uncharacterized protein n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7F556_PELSI)

HSP 1 Score: 74.7 bits (182), Expect = 9.120e-12
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1 
Query: 1636 KVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            KVE VL DGRR+I F NGT+KE         XXXXXXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct:    1 KVEEVLTDGRRIITFRNGTKKEISADKRMTVXXXXXXXXXXXXXXXRVIYYYADAQTTHTTYPNGLEVLQFPNNQIEKHH 80
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: A0A093GRZ7_STRCA (Centromere protein J (Fragment) n=7 Tax=Struthio camelus australis TaxID=441894 RepID=A0A093GRZ7_STRCA)

HSP 1 Score: 73.2 bits (178), Expect = 3.110e-11
Identity = 41/80 (51.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query: 1636 KVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            KVE +L DGRR+I F NGT+KE             XXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct:    1 KVEEMLTDGRRIITFRNGTKKEISADKRMTVVSFFXXXXXXXXPDQRVIYYYADAQTTHTAYPNGLEVLQFPNNQIEKHH 80
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: A0A151M2G1_ALLMI (Centromere protein J-like n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151M2G1_ALLMI)

HSP 1 Score: 76.6 bits (187), Expect = 4.430e-11
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 1 
Query: 1633 GKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            GKVE VL DGRRVI F NGT+KE            XXXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct:  223 GKVEEVLTDGRRVITFRNGTKKEISADKRMTVVSFXXXXXXXXXXDQRVIYFYADAQTTHTTYPTGLEVLQFPNNQIEKHH 303
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: A0A151M2G5_ALLMI (Uncharacterized protein n=1 Tax=Alligator mississippiensis TaxID=8496 RepID=A0A151M2G5_ALLMI)

HSP 1 Score: 76.6 bits (187), Expect = 1.240e-10
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 1 
Query: 1633 GKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            GKVE VL DGRRVI F NGT+KE            XXXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct:  764 GKVEEVLTDGRRVITFRNGTKKEISADKRMTVVSFXXXXXXXXXXDQRVIYFYADAQTTHTTYPTGLEVLQFPNNQIEKHH 844
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: UPI0009072E2C (centromere protein J n=2 Tax=Crocodylia TaxID=1294634 RepID=UPI0009072E2C)

HSP 1 Score: 76.6 bits (187), Expect = 1.290e-10
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 1 
Query: 1633 GKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            GKVE VL DGRRVI F NGT+KE            XXXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct:  850 GKVEEVLTDGRRVITFRNGTKKEISADKRMTVVSFXXXXXXXXXXDQRVIYFYADAQTTHTTYPTGLEVLQFPNNQIEKHH 930
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: A0A8C3HF20_CHRPI (Uncharacterized protein n=15 Tax=Testudinoidea TaxID=8486 RepID=A0A8C3HF20_CHRPI)

HSP 1 Score: 76.6 bits (187), Expect = 1.420e-10
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 1 
Query: 1633 GKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            GKVE VL DGRR+I F NGT+KE          XXXXXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct: 1132 GKVEEVLTDGRRIITFRNGTKKEISADKRMTVVXXXXXXXXXXXXXXRVIYYYADAQTTHTTYPNGLEVLQFPNNQIEKHH 1212
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: A0A3Q0FR35_ALLSI (T-complex protein 10A homolog isoform X1 n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A3Q0FR35_ALLSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.450e-10
Identity = 45/81 (55.56%), Postives = 52/81 (64.20%), Query Frame = 1 
Query: 1633 GKVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            GKVE VL DGRRVI F NGT+KE            XXXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct: 1241 GKVEEVLTDGRRVITFRNGTKKEISADKRMTVVSFXXXXXXXXXXDQRVIYFYADAQTTHTTYPTGLEVLQFPNNQIEKHH 1321
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Match: A0A674K8L4_TERCA (Uncharacterized protein n=1 Tax=Terrapene carolina triunguis TaxID=2587831 RepID=A0A674K8L4_TERCA)

HSP 1 Score: 74.7 bits (182), Expect = 1.570e-10
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1 
Query: 1636 KVEHVLRDGRRVILFANGTQKETXXXXXXXXXXXXXXXXRVEGETGVVIYTYAAARTTHTMHPSGLEVFEFPNGQVERHH 1875
            KVE VL DGRR+I F NGT+KE         XXXXXXXX        VIY YA A+TTHT +P+GLEV +FPN Q+E+HH
Sbjct:  199 KVEEVLTDGRRIITFRNGTKKEISADKRMTVXXXXXXXXXXXXXXXRVIYYYADAQTTHTTYPNGLEVLQFPNNQIEKHH 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10249.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC84_ECTSI2.760e-27677.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA73_9PHAE4.910e-25572.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K7F556_PELSI9.120e-1257.50Uncharacterized protein n=2 Tax=Pelodiscus sinensi... [more]
A0A093GRZ7_STRCA3.110e-1151.25Centromere protein J (Fragment) n=7 Tax=Struthio c... [more]
A0A151M2G1_ALLMI4.430e-1155.56Centromere protein J-like n=1 Tax=Alligator missis... [more]
A0A151M2G5_ALLMI1.240e-1055.56Uncharacterized protein n=1 Tax=Alligator mississi... [more]
UPI0009072E2C1.290e-1055.56centromere protein J n=2 Tax=Crocodylia TaxID=1294... [more]
A0A8C3HF20_CHRPI1.420e-1056.79Uncharacterized protein n=15 Tax=Testudinoidea Tax... [more]
A0A3Q0FR35_ALLSI1.450e-1055.56T-complex protein 10A homolog isoform X1 n=4 Tax=C... [more]
A0A674K8L4_TERCA1.570e-1057.50Uncharacterized protein n=1 Tax=Terrapene carolina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10249contigEcto-sp8_S_contig10249:1871..6918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score674.9
Seed ortholog evalue3.6e-191
Seed eggNOG ortholog2880.D8LC84
Model size2266
KEGG koko:K06236,ko:K11502
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000242,GO:0000278,GO:0000280,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007140,GO:0007275,GO:0007276,GO:0008104,GO:0008150,GO:0008356,GO:0009790,GO:0009987,GO:0015630,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031109,GO:0032501,GO:0032502,GO:0032504,GO:0032947,GO:0033036,GO:0033301,GO:0033365,GO:0034613,GO:0034622,GO:0035186,GO:0040011,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044703,GO:0044782,GO:0045448,GO:0046785,GO:0048232,GO:0048285,GO:0048609,GO:0048856,GO:0051179,GO:0051258,GO:0051298,GO:0051299,GO:0051301,GO:0051321,GO:0051641,GO:0051704,GO:0060271,GO:0065003,GO:0070727,GO:0070925,GO:0071539,GO:0071840,GO:0072698,GO:0097435,GO:0098534,GO:0120031,GO:0120036,GO:0140013,GO:1903046,GO:1905508,GO:1905793
Exons6
EggNOG free text desc.centriole elongation
EggNOG OGs2CMKS@1,2QQR0@2759
Cds size1839
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10249.411.1prot_Ecto-sp8_S_contig10249.411.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10249 2001..6148 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143123.4520526-UTR-Ecto-sp8_S_contig10249:1870..20001681143123.4520526-UTR-Ecto-sp8_S_contig10249:1870..2000Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10249 1871..2000 -
1681143123.5351186-UTR-Ecto-sp8_S_contig10249:6148..63321681143123.5351186-UTR-Ecto-sp8_S_contig10249:6148..6332Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10249 6149..6332 -
1681143123.5444016-UTR-Ecto-sp8_S_contig10249:6805..69181681143123.5444016-UTR-Ecto-sp8_S_contig10249:6805..6918Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10249 6806..6918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143123.4735334-CDS-Ecto-sp8_S_contig10249:2000..21471681143123.4735334-CDS-Ecto-sp8_S_contig10249:2000..2147Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10249 2001..2147 -
1681143123.4843848-CDS-Ecto-sp8_S_contig10249:2843..29721681143123.4843848-CDS-Ecto-sp8_S_contig10249:2843..2972Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10249 2844..2972 -
1681143123.4917202-CDS-Ecto-sp8_S_contig10249:3846..40081681143123.4917202-CDS-Ecto-sp8_S_contig10249:3846..4008Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10249 3847..4008 -
1681143123.5062416-CDS-Ecto-sp8_S_contig10249:4537..54191681143123.5062416-CDS-Ecto-sp8_S_contig10249:4537..5419Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10249 4538..5419 -
1681143123.523352-CDS-Ecto-sp8_S_contig10249:5629..61481681143123.523352-CDS-Ecto-sp8_S_contig10249:5629..6148Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10249 5630..6148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10249.411.1

>prot_Ecto-sp8_S_contig10249.411.1 ID=prot_Ecto-sp8_S_contig10249.411.1|Name=mRNA_Ecto-sp8_S_contig10249.411.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=613bp
MNDSVRKSLNGAGKARAGGGRSRVATVTLSAEAEPAREAGSRRLAERGHD
QEPRKHEEATAARRQDGGGAAWERGGDVDVREEETRGFGEGGMIVARERR
QDGGGHYYEPSVRNGARSGIYQYQKEDDRGEQHRWSRQAGGGNGGSGTRW
AEEEEEEEEGGGRHVDGRTSRGDGHQRDGEVLVGDEAGLGGDEGNLIKRA
NGGDELGSSWGGVRRSTARVSSSDGFKYDPMRYEMAPGSDPRVHPHEGGL
RSSSIGDGRQSMAALDRTSALRRSDAPGGGGMRTGSSAGDHHYHPRQLRE
NPRGDQDSAAAAMGDARGRNGNAGGDGDSRLDPHERRELNGTRGEEGDSA
IAGGGGGGGGGNGSLERGEHDAAAGAMRIAGQAHEGGRGPVTEREEKARG
HGSAGAPGANVQPPAAAAATAGFAGSSGAARSLPTGSGGSGSGSGGKVEH
VLRDGRRVILFANGTQKETLPDGGCVVRFVNGDLKRVEGETGVVIYTYAA
ARTTHTMHPSGLEVFEFPNGQVERHHKTGEKEIDFPDGTRKYILPSGREM
SEFPDGVTVVEYPEGHRDVTSPNGTTHRERPDGTVEDVTSSSSASSSKPF
GPSRGGVHRIHH*
back to top

mRNA from alignment at Ecto-sp8_S_contig10249:1871..6918-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10249.411.1 ID=mRNA_Ecto-sp8_S_contig10249.411.1|Name=mRNA_Ecto-sp8_S_contig10249.411.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5048bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10249:1871..6918- (Ectocarpus species8 EcLAC_412)
ACGGCCGTGGAGAGACGGCAGCGCCAAGAGATCGAAGGGCTCAAGGCCAC
AATCGAACGCGCCAAGCTAGACGCAGAGGCGGCAAAGAAAAAGTCTAGGG
CTTCTGAGCGGAGGTGAGGCGCGCGAATGAAATTTTGGTCCTCGTGTGCT
ACGTGGACGCCCTATTTGCTTGCAGCCGGTCGGTTTATGGTTCAGATGAC
ACGTCGCTTGGGGTTTGCTTGCGTGAGTGCGTGGCGTTTTGCGGATTAAA
GCTTGAAGTTCACACGGTGAGAGTGATTCAATTAGGTATAGTGCAAGAAA
TGTTGTTGCCGCAATGTGTTGCCGCAAGTGGAACTCTGCGGTGGCAAAAC
AACGGCTGTAGTTGGCCATCCGGTGCTCGTTCGCGTGCAGCAACTTCACA
CGTGCACTTGAGTTATAGCAAGACCCGCAGTGACAAAGCTTCCACAGGTT
GTGCAAACCCCATCCATGCCAAGCGGGGATAGACAACTCTGCTATTATAG
CATGTACACTGTACGCACATCGCGATTTCCCCTCCCGGGTCGATCATTCC
TAAACGGCATCGCTGCCCCGCGCCCCCTCCCTTCAGACTCCAGCAGCAGA
TCAAGGGCGGAGCCGAGCGCGTCGCCGAGCTGGAAGGCCAGGTCTCCTTC
CTAGAGCGGCAGAGAGTGGATGTCTGGGCTAGCGCTACGGGGGGCGGTGG
TGGTACCCTCGGCGGTACCGGCGGCCGTCCTTCCAGGGCAAGCGTTGTCG
CACCGAACGTGTCTCGCAGCATGAACGACAGCGTCCGAAAATCGTTAAAC
GGTGCGGGGAAGGCTAGGGCCGGTGGCGGAAGGTCGAGAGTCGCTACCGT
TACCCTCTCGGCGGAGGCCGAGCCCGCGAGGGAGGCGGGGTCACGGCGGC
TGGCGGAACGAGGCCACGACCAGGAGCCTCGCAAGCATGAGGAGGCAACC
GCAGCTAGGAGGCAAGACGGTGGCGGTGCCGCGTGGGAGAGGGGGGGCGA
TGTGGACGTGCGGGAGGAGGAGACGAGGGGTTTCGGTGAGGGAGGGATGA
TTGTGGCGAGGGAGCGAAGGCAGGACGGTGGTGGGCACTACTACGAGCCC
TCGGTCCGAAACGGTGCTCGGTCGGGGATATACCAGTACCAGAAGGAGGA
TGATCGGGGGGAGCAGCACCGGTGGTCTCGTCAGGCAGGTGGTGGCAACG
GTGGGAGCGGTACCCGCTGGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGC
GGAGGACGGCATGTCGATGGTCGAACAAGCAGGGGCGACGTACCATGGCG
AGCGGACGGCGACGACACGCGACTGGACAACAGCAACGCCGGCGGCGGGC
GCTGGGCGACTTCTCGTGTGCACGGCGGCGCTGCCCGTCCCCCCTCGGAC
GATGTCCAAGTCGCGCGCTTTCACGACCAGCAGCCCGGCCAAAGGCAGGA
GTGGGAGCACGCTGATGCCCGCATCTCTTCCCGCGGAGGAGGTGTGGAGG
GTCACCAGCGGGACGGCGAGGTTCTAGTCGGAGACGAAGCCGGCCTGGGG
GGCGACGAGGGTAACCTCATCAAACGCGCTAACGGCGGTGACGAGCTGGG
GTCGTCCTGGGGGGGAGTTCGACGTAGCACGGCGCGGGTGTCGTCGTCGG
ACGGTTTCAAGTACGATCCCATGAGGTACGAGATGGCTCCGGGGAGCGAT
CCAAGGGTGCACCCTCACGAGGGGGGCTTGCGGAGCAGCAGCATCGGCGA
CGGTAGACAGTCGATGGCGGCGCTGGACCGGACGTCCGCGTTGCGTCGCT
CCGATGCTCCAGGCGGTGGTGGCATGAGGACGGGATCCTCCGCCGGAGAC
CACCACTACCACCCGCGGCAGCTTAGAGAAAACCCCCGAGGTGACCAGGA
CAGTGCTGCTGCTGCCATGGGAGATGCTCGCGGGAGGAACGGCAATGCAG
GTGGCGACGGCGACAGCAGGTTAGACCCGCATGAGCGCAGGGAGCTGAAC
GGCACGCGGGGCGAAGAGGGTGACTCCGCCATTGCCGGCGGCGGCGGCGG
CGGCGGCGGCGGTAACGGATCGCTGGAGCGAGGCGAGCACGACGCGGCGG
CGGGGGCGATGCGGATAGCTGGACAAGCGCACGAGGGCGGCAGGGGTCCC
GTGACGGAGCGGGAAGAGAAGGCGCGTGGACACGGGAGCGCGGGGGCACC
GGGTGCAAACGTTCAGCCACCGGCGGCGGCGGCGGCGACGGCTGGCTTTG
CCGGGTCGTCGGGGGCAGCGAGGTCCTTGCCGACGGGGAGCGGCGGGAGT
GGGAGCGGGAGCGGGGGAAAGGTGGAACACGTTCTGAGGGACGGCAGGCG
GGTCATCTTGTTCGCGAATGGGACGCAGAAGGTGAGGCACGAGTGTCGGT
GTCGGTCTCAGGAAGTTGGCCCCGAAGGACATGATTTTTGATGCGACGCG
AGAGTGCCGCTGATGCTCTGGCGGTGATCACGGTAGCGGCTGTGGTTGCA
GAGAGAGAGCGCCATAGCTTCAAGCCACGCTCCTCTGGAAGTCATCTTGT
TTGATTCATGTCAGAGAAAAAAGAACCTCCTATCGAACAACCGAACAACC
ATGTGAGAGGGTTCGCTGGTCTCGAGGCTGGGAGGTGTTAACGTTAACGT
TCTAAACCAAGCTATGATCGTGGAAGCCCTGCCCCTGCCAAAACGTTGGA
GCAAATGAAACAAACAAAAAATCTTGACGAAATCCTTTTTTCTTTTTTGT
GACTTCGCTTAAAGAGTGCAAAGAGTGCAGCATGTGACGGTAACGTGTTT
TCGACTCCAGGAGGTTGTCTAGGCGACGCATCAAGTTCCCCTCGGGGCCC
CGGCAAGACCACAGACCCCCGCCCCCCCCCACACACACGCTCACGACGCC
CCCCCTGCAGGAGACGCTGCCCGATGGCGGTTGCGTAGTGCGGTTCGTGA
ACGGTGATCTTAAACGTGTCGAAGGGGAGACTGGGGTCGTCATCTACACC
TACGCCGCGGCCCGTACGACTCACACGATGCACCCCTCGGGGCTAGAGGT
GTTCGAGTTTCCCAACGGGCAGGTGTGTGTGTGCGTGTGTGTTTTGACGA
CGCGGAAGCTTGAGCTTGACCTCACTCACCGCTTGACCCTCGTCTCTCTC
TCTCTCTGCCCAGCATCGCGCTAGACGTCCTCGTCGGTGATGGATACAGT
GCAGTATGAGACGTTGCCGAATGTGGCCATGCCGTTCGAGCGCTGCCTGC
ATGGAGTTGTTACTGTTTTCGTTTTTTCTTCTTCTGCGGTGTCTTCTTGC
ATACCACCTGGTACGTTACCAGTGGGCAACTATGATTCCACCCAGTTCGG
GAATTTTGGAGCCGTTGGGGTATGTATTCACATTATTATAGTATCCTAAA
TTGTTTCTTGTAATTTGTAATTTCGAACAGAGTGATACCAGCAGACTACA
GTATGTGCCTACCACGACGGAGACTGACCTGGAGCAAGAGCGGTGTACCC
AGAAGCGTAGAACATCGGTCGTTCGTGGCTGAACAGCGCGAGGCTATGAT
GTTAGCTTAGCGTGATTACAGGGACGTTCTCAAGGCATGACGCGAGCCTT
TTTGTCCCGAGGTTCTTCTGCGCAAGACTTGGCAAAAATCTACCTATTAG
TACATCTCAAGCGAGTCTTGCGGAAGCCATTTTCTCATCTCAAAGCTCAT
GCCAGGAGCTTGTAAATGAGCCTATATCAAAATTGGAGAGAAGATGACTC
TTTGTGTGTGGACCTAGATCGTCCCCGCAAAGTGTGTTGTGGTGACCGGA
ATCTCGCGTGAACAGACCATTTAAGGCGACGGAGTCGTTCGAAGGCCTCG
TGTCAGGCATGGAGAACAATTTAATCGAAACCTGTGCAAGCATGATTTGT
GGTTTCTGATTGCTTGGTCGTCCTTGTGTGTGCAATGGGTGTCCAGGTGG
AGCGTCATCACAAGACGGGGGAGAAGGAGATCGACTTTCCAGACGGCACT
CGCAAGTACATACTGCCTTCCGGACGCGAGATGAGCGAGTTTCCCGATGG
GGTTACCGTCGTAGAGTACCCCGAGGTAATCCGATGTCGTTGTTGGTATT
GTTGTTGTTGTTGCCTGTCTCCACAAAGCTAAGGTTTAGCGAAATTGTCG
TCTTGCCTGTTTTTGTTCGAAATGAAGGGCTTGAGAACGTGAACGATGCT
CTTGATGATTGGCACGTATCACCATCAGTATCGTGTTGTTATTCCTATTC
CTATTTATTGCGCTGCTACCACCAACCCTGCGTCTCTGTCTTCCCAGTAC
CTCCCAGTACCTCCCAGTACCTCCCTCCCCTAATATAGTCCGTATTGACG
AACGGTGTACCGTGCATGGTGCAGGGTCCCGGCAGAAAACGATAAGTGCC
CAGATATTCCTTCCAGTTCCGGAGAAGAGTCGTTGTTGCCTTTGTAGTTC
ATTTCATGCATGTGCTTTTACCCTGAAGCGTTTAAAACCACGCGATAAAT
AATTTCAAGGCAAGCGCGGCAGAGGAATGCTCTTGTCTTTGTAACCCCCG
GATCAGAGGTCTTGAGTTGGAGAGGCGAGACCGGTCAGACTGCGAGCGGC
GGTAGGAGACGGGGACGGGGGAACCAAATGAATGATGTCATATGCGTACC
GCTGAGGTTACTCGCGTCTCTTGATGTGTGTCATTCGTTTCCTAGCTCGC
GTCTTACCATTACGCGCTTTTCCCCGTGTATGTGTGCACATCGGTGCCCG
AATGTGTATGTACTATCACAGGGGCACCGAGACGTGACGTCACCGAACGG
CACCACTCATCGCGAACGGCCCGACGGCACCGTGGAAGACGTTACATCTT
CATCTTCGGCATCGTCGTCGAAACCCTTCGGACCTTCGAGGGGGGGTGTT
CATCGCATTCATCACTAACTTGGCGTAGCGTCGGTAGCGTCGCGTGATGG
TTCACGGAACACTATTGCCGGGGTGGAGGGGCCGGTACGCCAGGGGTCGG
CGGGGTGTGGTTTAGCTCAACTTCATTCGCGGGACGGCTGGTAACGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10249:1871..6918-

>mRNA_Ecto-sp8_S_contig10249.411.1 ID=mRNA_Ecto-sp8_S_contig10249.411.1|Name=mRNA_Ecto-sp8_S_contig10249.411.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1839bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10249:1871..6918- (Ectocarpus species8 EcLAC_412)
ATGAACGACAGCGTCCGAAAATCGTTAAACGGTGCGGGGAAGGCTAGGGC
CGGTGGCGGAAGGTCGAGAGTCGCTACCGTTACCCTCTCGGCGGAGGCCG
AGCCCGCGAGGGAGGCGGGGTCACGGCGGCTGGCGGAACGAGGCCACGAC
CAGGAGCCTCGCAAGCATGAGGAGGCAACCGCAGCTAGGAGGCAAGACGG
TGGCGGTGCCGCGTGGGAGAGGGGGGGCGATGTGGACGTGCGGGAGGAGG
AGACGAGGGGTTTCGGTGAGGGAGGGATGATTGTGGCGAGGGAGCGAAGG
CAGGACGGTGGTGGGCACTACTACGAGCCCTCGGTCCGAAACGGTGCTCG
GTCGGGGATATACCAGTACCAGAAGGAGGATGATCGGGGGGAGCAGCACC
GGTGGTCTCGTCAGGCAGGTGGTGGCAACGGTGGGAGCGGTACCCGCTGG
GCGGAGGAGGAGGAGGAGGAGGAGGAGGGCGGAGGACGGCATGTCGATGG
TCGAACAAGCAGGGGCGACGGTCACCAGCGGGACGGCGAGGTTCTAGTCG
GAGACGAAGCCGGCCTGGGGGGCGACGAGGGTAACCTCATCAAACGCGCT
AACGGCGGTGACGAGCTGGGGTCGTCCTGGGGGGGAGTTCGACGTAGCAC
GGCGCGGGTGTCGTCGTCGGACGGTTTCAAGTACGATCCCATGAGGTACG
AGATGGCTCCGGGGAGCGATCCAAGGGTGCACCCTCACGAGGGGGGCTTG
CGGAGCAGCAGCATCGGCGACGGTAGACAGTCGATGGCGGCGCTGGACCG
GACGTCCGCGTTGCGTCGCTCCGATGCTCCAGGCGGTGGTGGCATGAGGA
CGGGATCCTCCGCCGGAGACCACCACTACCACCCGCGGCAGCTTAGAGAA
AACCCCCGAGGTGACCAGGACAGTGCTGCTGCTGCCATGGGAGATGCTCG
CGGGAGGAACGGCAATGCAGGTGGCGACGGCGACAGCAGGTTAGACCCGC
ATGAGCGCAGGGAGCTGAACGGCACGCGGGGCGAAGAGGGTGACTCCGCC
ATTGCCGGCGGCGGCGGCGGCGGCGGCGGCGGTAACGGATCGCTGGAGCG
AGGCGAGCACGACGCGGCGGCGGGGGCGATGCGGATAGCTGGACAAGCGC
ACGAGGGCGGCAGGGGTCCCGTGACGGAGCGGGAAGAGAAGGCGCGTGGA
CACGGGAGCGCGGGGGCACCGGGTGCAAACGTTCAGCCACCGGCGGCGGC
GGCGGCGACGGCTGGCTTTGCCGGGTCGTCGGGGGCAGCGAGGTCCTTGC
CGACGGGGAGCGGCGGGAGTGGGAGCGGGAGCGGGGGAAAGGTGGAACAC
GTTCTGAGGGACGGCAGGCGGGTCATCTTGTTCGCGAATGGGACGCAGAA
GGAGACGCTGCCCGATGGCGGTTGCGTAGTGCGGTTCGTGAACGGTGATC
TTAAACGTGTCGAAGGGGAGACTGGGGTCGTCATCTACACCTACGCCGCG
GCCCGTACGACTCACACGATGCACCCCTCGGGGCTAGAGGTGTTCGAGTT
TCCCAACGGGCAGGTGGAGCGTCATCACAAGACGGGGGAGAAGGAGATCG
ACTTTCCAGACGGCACTCGCAAGTACATACTGCCTTCCGGACGCGAGATG
AGCGAGTTTCCCGATGGGGTTACCGTCGTAGAGTACCCCGAGGGGCACCG
AGACGTGACGTCACCGAACGGCACCACTCATCGCGAACGGCCCGACGGCA
CCGTGGAAGACGTTACATCTTCATCTTCGGCATCGTCGTCGAAACCCTTC
GGACCTTCGAGGGGGGGTGTTCATCGCATTCATCACTAA
back to top