mRNA_Ecto-sp8_S_contig10235.382.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10235.382.1
Unique NamemRNA_Ecto-sp8_S_contig10235.382.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: A0A6H5JLJ5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLJ5_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.540e-65
Identity = 108/112 (96.43%), Postives = 109/112 (97.32%), Query Frame = -3 
Query:    2 SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLHTKGILH 337
            SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELA GGSLQHYLYSTT PLAHALQTAFLYD+ARGMSFLH KGILH
Sbjct:  187 SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELASGGSLQHYLYSTTVPLAHALQTAFLYDVARGMSFLHAKGILH 298
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BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: D8LQ15_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ15_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.070e-57
Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = -3 
Query:    2 SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLHTKGILH 337
            SGGFGEVRTAKWNGADVAVKHLL  G+QRDC+R LRKEIRLHSSL F+FVA LYAASTIAPHLCLVVELA GGSLQ YL+S +EPLAHALQTAFLYD+ARGM+FLH KGILH
Sbjct:  187 SGGFGEVRTAKWNGADVAVKHLLASGIQRDCVRDLRKEIRLHSSLSFDFVAPLYAASTIAPHLCLVVELASGGSLQQYLHSASEPLAHALQTAFLYDVARGMAFLHVKGILH 298
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BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: D7FHK4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK4_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.420e-50
Identity = 82/112 (73.21%), Postives = 93/112 (83.04%), Query Frame = -3 
Query:    2 SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLHTKGILH 337
            SGG GEVRT KWNG+DVAVK LL  GL RD +R+LRKE+R+H++L F+ V  LYAASTI PHLCLVVELA GGSL+ YL ST EPLAHALQTAFL+DIARGM FL+ KG LH
Sbjct:   56 SGGVGEVRTVKWNGSDVAVKRLLADGLDRDDVRALRKEVRIHANLRFDHVVQLYAASTIPPHLCLVVELASGGSLRQYLRSTNEPLAHALQTAFLFDIARGMWFLNKKGTLH 167
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BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: A0A6H5JY67_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY67_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 7.190e-50
Identity = 86/111 (77.48%), Postives = 94/111 (84.68%), Query Frame = -3 
Query:    2 GGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLHTKGILH 334
            GGFGEVRTAKW GADVAVKHL+  G+ RD +R LRKEIRLHSSL F+FV  LYAASTI PHLCLVVELA GGSLQ YL S ++PL HALQ AFLYD+ARGM+FLH KGILH
Sbjct:  188 GGFGEVRTAKWKGADVAVKHLMASGIHRDTVRDLRKEIRLHSSLSFDFVTPLYAASTIIPHLCLVVELASGGSLQQYLRSASDPLGHALQAAFLYDVARGMTFLHDKGILH 298
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: D7G890_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G890_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 5.120e-46
Identity = 84/112 (75.00%), Postives = 94/112 (83.93%), Query Frame = -3 
Query:    2 SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLHTKGILH 337
            SGGFGEV TAKWNG+ VAVK LL G L RD +R+LRKEIR+HS+L F+ V  LYAASTI P LCLVVELA  GSL+  L+S++EPLAHALQTAFLYDIARGMSFLH KGILH
Sbjct:  187 SGGFGEVCTAKWNGSHVAVKRLLAGDLHRDDVRTLRKEIRIHSNLRFDHVVQLYAASTIPPRLCLVVELASRGSLRENLHSSSEPLAHALQTAFLYDIARGMSFLHKKGILH 298
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BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: A0A6H5KGQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ4_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.610e-39
Identity = 75/112 (66.96%), Postives = 88/112 (78.57%), Query Frame = -3 
Query:    2 SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLHTKGILH 337
            SG FG V TAKWNG+DVAVK+L      RD IR++RKEIR H+SL F+ V  LYAASTIAP+LC+V+E A  GSL  YL+ST +PLAH LQTAFL+DIARG+ FLH KGILH
Sbjct:  192 SGSFGVVTTAKWNGSDVAVKYLREDD-NRDLIRAIRKEIRTHASLRFDHVVQLYAASTIAPNLCMVMEYASEGSLWQYLHSTRKPLAHPLQTAFLFDIARGLMFLHNKGILH 302
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: A0A6H5KS20_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS20_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.390e-38
Identity = 73/112 (65.18%), Postives = 89/112 (79.46%), Query Frame = -3 
Query:    2 SGGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLHTKGILH 337
            SG FGEV+TA+WNG++VAVKHL      RD IR++RKEIR H+SL F+ V  LYAASTIAP+LC+V+E A  GSL  +L+ST +PLAH LQ AFL+DIARG+ FLH KGILH
Sbjct:  246 SGSFGEVKTARWNGSEVAVKHLREDD-NRDLIRAIRKEIRTHASLRFDHVVQLYAASTIAPNLCMVMEYASEGSLWQHLHSTRKPLAHPLQAAFLFDIARGLMFLHNKGILH 356
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BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: F0WPQ9_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WPQ9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.560e-14
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = -3 
Query:    2 GGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLH--TKGILH 334
            G FG+V   +W G  VA+K L+   L+ D ++ L  E+R+ S L    +  L  A     H  LVVEL++ GSL   L ++   L   ++T FLYD A+GMS+LH   + ILH
Sbjct:  187 GAFGKVHEGRWRGRAVAIKVLICQDLRHDIMKELESEVRIMSVLRHPNICRLLGACMDPQHRALVVELSQRGSLWSVLRNSRRSLTLDMRTRFLYDTAKGMSYLHHFERPILH 299
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: A0A662WSB9_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WSB9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.120e-14
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = -3 
Query:    2 GGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLH--TKGILH 334
            G FG+V   KW G  VAVK L+   L+ D +   + E+ + S L    +  L  A    PH  LVVEL + GSL   L    + L   L++ F+YD A+GMS+LH   + ILH
Sbjct:  263 GAFGKVHEGKWRGKSVAVKLLICQDLRSDILHEFQSEVEIMSVLRHPNICRLLGACMEPPHRALVVELLQRGSLWGVLRMNRKSLDQTLRSRFIYDTAKGMSYLHHFERPILH 375
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Match: A0A3M6VGE0_9STRA (Protein kinase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGE0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.330e-13
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = -3 
Query:   20 GGFGEVRTAKWNGADVAVKHLLTGGLQRDCIRSLRKEIRLHSSLHFEFVAALYAASTIAPHLCLVVELARGGSLQHYLYSTTEPLAHALQTAFLYDIARGMSFLH 334
            G FG+V  A W G +VAVK L+   L  D +R    E+++ S LH   +  L  A     +  LV+EL   GSL   L +  + +   ++  F+YD ARGMS+LH
Sbjct:  210 GAFGKVFKASWKGQNVAVKVLIRKNLSADVVREFETEVKIMSFLHHPNICMLLGACLAPENRALVIELVEQGSLWAVLRTQRQQITDEMRARFVYDTARGMSYLH 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10235.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLJ5_9PHAE1.540e-6596.43Protein kinase domain-containing protein n=2 Tax=E... [more]
D8LQ15_ECTSI2.070e-5785.71Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
D7FHK4_ECTSI4.420e-5073.21Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JY67_9PHAE7.190e-5077.48Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G890_ECTSI5.120e-4675.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KGQ4_9PHAE4.610e-3966.96Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5KS20_9PHAE1.390e-3865.18Protein kinase domain-containing protein n=1 Tax=E... [more]
F0WPQ9_9STRA2.560e-1438.94Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
A0A662WSB9_9STRA5.120e-1438.94Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A3M6VGE0_9STRA4.330e-1337.14Protein kinase domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10235contigEcto-sp8_S_contig10235:1907..2245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.6814308-CDS-Ecto-sp8_S_contig10235:1906..22451681143121.6814308-CDS-Ecto-sp8_S_contig10235:1906..2245Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10235 1907..2245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10235.382.1prot_Ecto-sp8_S_contig10235.382.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10235 1907..2245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10235.382.1

>prot_Ecto-sp8_S_contig10235.382.1 ID=prot_Ecto-sp8_S_contig10235.382.1|Name=mRNA_Ecto-sp8_S_contig10235.382.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=113bp
DAEYPWCARTTCPLQYRTGTLSAAHVRAARLLSTGSVVENPPWRAPRPGK
GGGQWSKLRIARPRTQSADLSEGESPSSGSGYSLAGGHPSGGASLLRLPR
STWPCALRRTPQT
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mRNA from alignment at Ecto-sp8_S_contig10235:1907..2245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10235.382.1 ID=mRNA_Ecto-sp8_S_contig10235.382.1|Name=mRNA_Ecto-sp8_S_contig10235.382.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10235:1907..2245+ (Ectocarpus species8 EcLAC_412)
GATGCAGAATACCCTTGGTGTGCAAGAACGACATGCCCCTTGCAATATCG
TACAGGAACGCTGTCTGCAGCGCATGTGCGAGCGGCTCGGTTGTTGAGTA
CAGGTAGTGTTGTAGAGAACCCCCCCTGGCGAGCTCCACGACCAGGCAAA
GGTGGGGGGCAATGGTCGAAGCTGCGTATAGCGCGGCCACGAACTCAAAG
TGCAGACTTGAGTGAAGGCGAATCTCCTTCCTCAGGGAGCGGATACAGTC
TCGCTGGAGGCCACCCGTCAGGAGGTGCTTCACTGCTACGTCTGCCCCGT
TCCACTTGGCCGTGCGCACTTCGCCGAACCCCCCAGACC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10235:1907..2245+

>mRNA_Ecto-sp8_S_contig10235.382.1 ID=mRNA_Ecto-sp8_S_contig10235.382.1|Name=mRNA_Ecto-sp8_S_contig10235.382.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10235:1907..2245+ (Ectocarpus species8 EcLAC_412)
GATGCAGAATACCCTTGGTGTGCAAGAACGACATGCCCCTTGCAATATCG
TACAGGAACGCTGTCTGCAGCGCATGTGCGAGCGGCTCGGTTGTTGAGTA
CAGGTAGTGTTGTAGAGAACCCCCCCTGGCGAGCTCCACGACCAGGCAAA
GGTGGGGGGCAATGGTCGAAGCTGCGTATAGCGCGGCCACGAACTCAAAG
TGCAGACTTGAGTGAAGGCGAATCTCCTTCCTCAGGGAGCGGATACAGTC
TCGCTGGAGGCCACCCGTCAGGAGGTGCTTCACTGCTACGTCTGCCCCGT
TCCACTTGGCCGTGCGCACTTCGCCGAACCCCCCAGACC
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