mRNA_Ecto-sp8_S_contig10234.379.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10234.379.1
Unique NamemRNA_Ecto-sp8_S_contig10234.379.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10234.379.1 vs. uniprot
Match: A0A6H5JIY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY2_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.200e-49
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    1 RAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGASSVGGDNGFNPVFSAAAGTGGRLRGGASA 270
            +AMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNE+QGGGGRGA SVGGDNGF+PVFSAAAGTGGRLRGGA A
Sbjct:   39 KAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEKQGGGGRGAGSVGGDNGFSPVFSAAAGTGGRLRGGAGA 128
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BLAST of mRNA_Ecto-sp8_S_contig10234.379.1 vs. uniprot
Match: D7FHS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS1_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 4.530e-48
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 RAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGASSVGGDNGFNPVFSAAAGTGGRLRGGASA 270
            +AMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGA SVGGDNG +PVFSAAAGTGGRLRGGA A
Sbjct:  137 KAMMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNEEQGGGGRGAGSVGGDNGLSPVFSAAAGTGGRLRGGAGA 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10234.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIY2_9PHAE1.200e-4994.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS1_ECTSI4.530e-4894.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10234contigEcto-sp8_S_contig10234:5846..6761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score162.9
Seed ortholog evalue8.8e-38
Seed eggNOG ortholog2880.D7FHS1
Model size354
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.3hydroxyisobutyrate dehydrogenase
EggNOG OGsCOG2084@1,KOG0409@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006560.1
Cds size348
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.5922341-CDS-Ecto-sp8_S_contig10234:5845..61031681143121.5922341-CDS-Ecto-sp8_S_contig10234:5845..6103Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10234 5846..6103 -
1681143121.6089845-CDS-Ecto-sp8_S_contig10234:6665..67551681143121.6089845-CDS-Ecto-sp8_S_contig10234:6665..6755Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10234 6666..6755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.6171374-UTR-Ecto-sp8_S_contig10234:6755..67611681143121.6171374-UTR-Ecto-sp8_S_contig10234:6755..6761Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10234 6756..6761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10234.379.1prot_Ecto-sp8_S_contig10234.379.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10234 5846..6755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10234.379.1

>prot_Ecto-sp8_S_contig10234.379.1 ID=prot_Ecto-sp8_S_contig10234.379.1|Name=mRNA_Ecto-sp8_S_contig10234.379.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=116bp
MMEYGQSSGMVNVDGTMMPDPTKHPELEAMASMSVKDMLAEFKMEDKRNE
EQGGGGRGASSVGGDNGFNPVFSAAAGTGGRLRGGASAGGMGKAGDAAAP
QKNKKGKKGKKDRRR*
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mRNA from alignment at Ecto-sp8_S_contig10234:5846..6761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10234.379.1 ID=mRNA_Ecto-sp8_S_contig10234.379.1|Name=mRNA_Ecto-sp8_S_contig10234.379.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=916bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10234:5846..6761- (Ectocarpus species8 EcLAC_412)
AGGGCGATGATGGAGTACGGCCAGTCGAGCGGCATGGTAAACGTGGACGG
GACGATGATGCCGGATCCCACCAAGCACCCGGAGCTGGAAGCCATGGTGA
GAGCTGGGACACGGCGGAATGTTGCGGCGAACGTACGCATGGGCTTTTAG
GGATTGTAAGCACTTCGTCCGGTGTGAGACACCGGTTTTGAAAACCCTGC
AAGTGTCCGGCGGGAAGCTACGGCGGTTCCCACGTGTGTTGGACGATATC
CACGTGCCCAGCCTTCGGGCATGGACGCTTGAAGTACTTGTGAGATGGCT
TTGGCTATGGAGCGAGATGGCTTGTTCGTTTGAACAACAAATCTCGCGAG
GCGAGCGGTGGAGGGCGGGCAAGAAAGTAAAATCGTCACAGGGGGGGTGG
AGAGAGAGGAAGATGGGCGCCTGGTAGAGGGTGCAATACGGCGGCGCGAA
CCCACACAAGACGCACGCAGCCCGGCCCCCCAGACGTCTGCTCCGTCGCC
AGGCGTGCGTTGTTTTTTCCCTGCCGTCCTGTTTGTCTTGCTGCTTTTTT
TTTGCATACCTATGCAATGTCAATGATCTCCAGCATGGCAAACCAACATA
CCCCTCGCTCCCTGCGCTATTGTTCCCTTGACGAACCCCCCTGGCAACCG
ACGACAAGGCGTCCATGTCGGTGAAGGACATGCTGGCGGAGTTCAAGATG
GAGGACAAGCGGAACGAGGAGCAAGGCGGCGGTGGCCGCGGCGCTAGCTC
CGTCGGGGGTGACAACGGTTTCAACCCCGTATTTTCGGCGGCAGCGGGGA
CTGGGGGACGGTTAAGGGGCGGGGCCAGCGCTGGGGGGATGGGAAAGGCG
GGGGATGCGGCGGCCCCGCAAAAAAACAAGAAGGGGAAGAAGGGAAAGAA
AGATAGAAGACGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10234:5846..6761-

>mRNA_Ecto-sp8_S_contig10234.379.1 ID=mRNA_Ecto-sp8_S_contig10234.379.1|Name=mRNA_Ecto-sp8_S_contig10234.379.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10234:5846..6761- (Ectocarpus species8 EcLAC_412)
ATGATGGAGTACGGCCAGTCGAGCGGCATGGTAAACGTGGACGGGACGAT
GATGCCGGATCCCACCAAGCACCCGGAGCTGGAAGCCATGGCGTCCATGT
CGGTGAAGGACATGCTGGCGGAGTTCAAGATGGAGGACAAGCGGAACGAG
GAGCAAGGCGGCGGTGGCCGCGGCGCTAGCTCCGTCGGGGGTGACAACGG
TTTCAACCCCGTATTTTCGGCGGCAGCGGGGACTGGGGGACGGTTAAGGG
GCGGGGCCAGCGCTGGGGGGATGGGAAAGGCGGGGGATGCGGCGGCCCCG
CAAAAAAACAAGAAGGGGAAGAAGGGAAAGAAAGATAGAAGACGGTAG
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