mRNA_Ecto-sp8_S_contig10230.374.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10230.374.1
Unique NamemRNA_Ecto-sp8_S_contig10230.374.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10230.374.1 vs. uniprot
Match: D7FVG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG6_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 4.270e-62
Identity = 104/110 (94.55%), Postives = 105/110 (95.45%), Query Frame = 2 
Query:   95 MRQGGHSKRPREGNSALYTAVCRGDADLVAELLKPKRHG*RDGSAAAAEGAPAGLDLEELSRGSTALHAACGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAVKVRER 424
            MRQGGHSKRPREGNSALYTAVCRGDADLVAELLKPK HG RDGSAAAA GAPA LDLEELSRGSTALHA CGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAV+VRER
Sbjct:    1 MRQGGHSKRPREGNSALYTAVCRGDADLVAELLKPKPHGQRDGSAAAAAGAPAALDLEELSRGSTALHAGCGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAVEVRER 110
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BLAST of mRNA_Ecto-sp8_S_contig10230.374.1 vs. uniprot
Match: A0A6H5L3F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F6_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 3.400e-55
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 2 
Query:   95 MRQGGHSKRPREGNSALYTAVCRGDADLVAELLKPKRHG*RDGSAAAAEGAPAGLDLEELSRGSTALHAACGTGQSRIVAMLIEAGADPNTVRPKDGYSPLLIAV 409
            MRQGGHSK PREGNSALYTAVCRGDA+L AELLK KRHG  DGSAAAA GAPA LDLEELSRGSTALHAACGT QSRIVAMLIEAGADPNTV PKDGYSPLLIAV
Sbjct:    1 MRQGGHSKPPREGNSALYTAVCRGDANLAAELLKSKRHGQPDGSAAAAAGAPAALDLEELSRGSTALHAACGTWQSRIVAMLIEAGADPNTVSPKDGYSPLLIAV 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10230.374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVG6_ECTSI4.270e-6294.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3F6_9PHAE3.400e-5590.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10230contigEcto-sp8_S_contig10230:21..1291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score63.2
Seed ortholog evalue5e-08
Seed eggNOG ortholog2880.D7FVG6
Model size518
KEGG koko:K16726
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size183
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.3146322-CDS-Ecto-sp8_S_contig10230:20..2031681143121.3146322-CDS-Ecto-sp8_S_contig10230:20..203Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10230 21..203 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.3259172-UTR-Ecto-sp8_S_contig10230:203..4761681143121.3259172-UTR-Ecto-sp8_S_contig10230:203..476Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10230 204..476 -
1681143121.3438942-UTR-Ecto-sp8_S_contig10230:1230..12911681143121.3438942-UTR-Ecto-sp8_S_contig10230:1230..1291Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10230 1231..1291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10230.374.1prot_Ecto-sp8_S_contig10230.374.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10230 21..203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10230.374.1

>prot_Ecto-sp8_S_contig10230.374.1 ID=prot_Ecto-sp8_S_contig10230.374.1|Name=mRNA_Ecto-sp8_S_contig10230.374.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=61bp
MLIEAGADPNTVRPKDGYSPLLIAVKVRERGIVKALLEAKADPELSSHAE
GIAPLHMAASQ
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mRNA from alignment at Ecto-sp8_S_contig10230:21..1291-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10230.374.1 ID=mRNA_Ecto-sp8_S_contig10230.374.1|Name=mRNA_Ecto-sp8_S_contig10230.374.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1271bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10230:21..1291- (Ectocarpus species8 EcLAC_412)
GTGGCAATTCCTCGGCTGATTCCATACTCCATACGCGTCGAGCCACCGCC
AACAAGAGCAAGTGAGTTTCGATCGTTTACGTGTGTTTTCGCCAATAAAA
TCAGTAAGGAGTCAGCGACAACTCACAACAGCAGTACGCTCCTTGCGGAT
TGCAGATATCTTTTCGCGCCCCCGATCGGGCTGCACTTGGGCTGCACGAT
TGGCGCAAGGGCGAGGCAACCGGGAAGCTCGACGAGCATGCTCGTAAAGA
CCAAGAAGTCTCATGTCCCTCCCGGGACATGTGTCGGCCGTGCTATTGGG
CAGCATGCGTACGTGTTTGGTAGATGTCATAGCGGCTAACGCTACACTCG
CCCAAAGCAGCTATACTGCCCTTGGGAAGAGACAGAGGAGGCGACTGCGT
GTTGTTCACTCCGCATCTTCGGCGCGGGAAAGGCAAAGGGTGTCGTTCGA
GCCCAAATAACTTAACTAATTCATGGCTGATTTTCTTAACGGCCGAAATA
GCGCCCCGGCAAGTACACACAAAAACGTGCTTCTTTGCCCGCAGTCCAGG
AGGTGTGGGCCGTCATAGCAGTGGAACGTGACAGGTTCGGACCCGGAGAG
TGTGCGGAATGTTTCGGACAGACGCGACGGCCTTCGCCAGCCCACAGCAT
GTTTGACGAAAAACGAGCTCACGCCGAGAGTAAGGGGTTAAAAGAAGTAG
GCGAGCATCAGCACGGGCAAAAAGATGGAAAATGCACTTTAAACTGCTGT
GAGCGCATTTCGCATTTTGTTTACCCGCACCCTCTCCTCTCTCCGCGCTT
CGCGATTTGGCTTAGTCATTGCGCAACCAGGGGACATCGGATAAGACCAT
GCGGCAGGGGGGGCACTCCAAGCGGCCGCGGGAGGGAAACTCCGCCCTGT
ACACCGCCGTCTGCCGGGGAGACGCCGATCTCGTGGCGGAGCTCCTGAAG
CCGAAGCGACATGGGTAGCGCGACGGGAGCGCGGCGGCGGCGGAAGGCGC
ACCGGCAGGGTTAGACTTGGAGGAGCTCTCCCGTGGCTCCACCGCCCTCC
ACGCCGCCTGCGGGACGGGGCAGTCCCGGATCGTGGCAATGCTGATCGAG
GCGGGGGCCGACCCTAACACGGTCAGGCCCAAAGACGGCTACAGCCCTCT
CCTGATTGCCGTGAAGGTGAGGGAGCGAGGCATTGTCAAGGCTCTGCTGG
AGGCCAAGGCGGACCCGGAATTGTCCAGCCACGCCGAGGGCATCGCACCC
CTCCACATGGCCGCCTCGCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10230:21..1291-

>mRNA_Ecto-sp8_S_contig10230.374.1 ID=mRNA_Ecto-sp8_S_contig10230.374.1|Name=mRNA_Ecto-sp8_S_contig10230.374.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10230:21..1291- (Ectocarpus species8 EcLAC_412)
ATGCTGATCGAGGCGGGGGCCGACCCTAACACGGTCAGGCCCAAAGACGG
CTACAGCCCTCTCCTGATTGCCGTGAAGGTGAGGGAGCGAGGCATTGTCA
AGGCTCTGCTGGAGGCCAAGGCGGACCCGGAATTGTCCAGCCACGCCGAG
GGCATCGCACCCCTCCACATGGCCGCCTCGCAG
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