mRNA_Ecto-sp8_S_contig10229.372.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10229.372.1
Unique NamemRNA_Ecto-sp8_S_contig10229.372.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10229.372.1 vs. uniprot
Match: A0A6H5KVG3_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVG3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.000e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  160 VGGDGYGSARRVGASLGGETKDGEKPRAAPFRTVRRLGPLTERQKR 297
            VGGDGYGSARRVGASLGGETKDGEKPRAAPFRTVRRLGPLTERQKR
Sbjct:  332 VGGDGYGSARRVGASLGGETKDGEKPRAAPFRTVRRLGPLTERQKR 377
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10229.372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVG3_9PHAE1.000e-19100.00HECT domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10229contigEcto-sp8_S_contig10229:131..964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score93.2
Seed ortholog evalue7.4e-17
Seed eggNOG ortholog2880.D7FQJ4
Model size300
KEGG koko:K04678,ko:K10591,ko:K10592,ko:K13305
KEGG Pathwayko04011,ko04120,ko04144,ko04340,ko04341,ko04350,ko04530,ko04960,ko05169,map04011,map04120,map04144,map04340,map04341,map04350,map04530,map04960,map05169
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0940@2759
EC2.3.2.26
Cds size300
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.137831-CDS-Ecto-sp8_S_contig10229:130..3441681143121.137831-CDS-Ecto-sp8_S_contig10229:130..344Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10229 131..344 -
1681143121.1510653-CDS-Ecto-sp8_S_contig10229:878..9641681143121.1510653-CDS-Ecto-sp8_S_contig10229:878..964Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10229 879..964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10229.372.1prot_Ecto-sp8_S_contig10229.372.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10229 131..964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10229.372.1

>prot_Ecto-sp8_S_contig10229.372.1 ID=prot_Ecto-sp8_S_contig10229.372.1|Name=mRNA_Ecto-sp8_S_contig10229.372.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
ESEVAIEPEAAAPPPLLLQAGTGLMQGGSTGGGTTAPDDDDDNDDDDYIV
GGGVGGDGYGSARRVGASLGGETKDGEKPRAAPFRTVRRLGPLTERQKR*
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mRNA from alignment at Ecto-sp8_S_contig10229:131..964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10229.372.1 ID=mRNA_Ecto-sp8_S_contig10229.372.1|Name=mRNA_Ecto-sp8_S_contig10229.372.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=834bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10229:131..964- (Ectocarpus species8 EcLAC_412)
GAGAGCGAGGTCGCGATCGAACCCGAGGCTGCCGCGCCGCCGCCGCTGCT
GCTGCAGGCGGGGACGGGGTTGATGCAGGGGGGCAGGTGGGTGGAGGGGA
CCAGAGGAAGAAGGAGGTGAAGCCTACTTTTTTTTGTGTGTTTTGTGTGT
GTTGACGGTATCGTCGTGCACTAGATAGTCTCGGTGCCAGCTCGGCGGGA
GACGGGGGCTTTCGCCACCCCCTCCGCTCTCAATTCTGACTAAACTACAC
ACGTTGTTTGTGTGTTTCTTCTTGCTATGTGTACGTGTGGATGCGTGTTT
AGACCTAGTGTTTCGCTTTGACACCATCTTAGCATTTTGATTCTTGGGGA
AATATTATGTGTTTGTTTGTCTTTTGCTGTCCTTGTTAAGGATAAACCCT
AGCCCTGATGCGAGCAAACGGCTGCCCGCCTTGCTGTCGACTTACCGAAA
GGGATCAGGCGGTTTGATCACCCCCCTCCCGGACTTGCTCTGTTTTTTTT
TTTGCTCTTGGCTCAAACCGCGAAAGGCAACCTAGTAAATAGCCTCGTTC
CCTTAACCGCAGTTTTTCTTTTTTCCTAAAAATTACACTTGATCGTTTGT
TTGGTTTCGTTTTTTTTTAGCACCGGCGGCGGCACTACTGCACCAGACGA
CGACGACGACAACGACGACGATGACTACATCGTCGGTGGCGGCGTTGGCG
GGGACGGTTACGGCTCAGCGCGCCGCGTGGGGGCTTCCCTCGGGGGAGAG
ACGAAGGACGGGGAAAAGCCTCGCGCAGCGCCGTTCCGCACGGTGCGGCG
CCTCGGGCCCTTGACAGAACGGCAAAAGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10229:131..964-

>mRNA_Ecto-sp8_S_contig10229.372.1 ID=mRNA_Ecto-sp8_S_contig10229.372.1|Name=mRNA_Ecto-sp8_S_contig10229.372.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10229:131..964- (Ectocarpus species8 EcLAC_412)
GAGAGCGAGGTCGCGATCGAACCCGAGGCTGCCGCGCCGCCGCCGCTGCT
GCTGCAGGCGGGGACGGGGTTGATGCAGGGGGGCAGCACCGGCGGCGGCA
CTACTGCACCAGACGACGACGACGACAACGACGACGATGACTACATCGTC
GGTGGCGGCGTTGGCGGGGACGGTTACGGCTCAGCGCGCCGCGTGGGGGC
TTCCCTCGGGGGAGAGACGAAGGACGGGGAAAAGCCTCGCGCAGCGCCGT
TCCGCACGGTGCGGCGCCTCGGGCCCTTGACAGAACGGCAAAAGAGGTGA
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