mRNA_Ecto-sp8_S_contig10226.369.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE) HSP 1 Score: 153 bits (387), Expect = 9.940e-43 Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVLVCG 231
+ARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQV G
Sbjct: 281 VARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVHPAG 357
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI) HSP 1 Score: 106 bits (264), Expect = 6.660e-25 Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1
Query: 70 TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVLVCG 231
TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLN+PLGDQV G
Sbjct: 1727 TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNLPLGDQVHPAG 1780
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A7S1VI57_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VI57_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 6.620e-15 Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA-------FNRGEGENT-------SQAKIFPGTGAEGEAHGNVLNIPLGDQV 219
+ RV ++DFDVHHGNGTQD+LC T P F Y S+HA + + EN +Q IFPG + H VLNIPLGD+V
Sbjct: 514 LKRVCIIDFDVHHGNGTQDILCNTFDPRFFYISLHAGGAQINGYETEDSENDFRSFSSKNQDGIFPGRSGDVSPHAGVLNIPLGDKV 600
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: K0TPX8_THAOC (Hist_deacetyl domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPX8_THAOC) HSP 1 Score: 75.1 bits (183), Expect = 5.960e-14 Identity = 41/89 (46.07%), Postives = 47/89 (52.81%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA----------------FNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQV 219
+ RV V+DFDVHHGNGTQD+LC T P FLY S+HA F G Q IFPG + H VLN+PLG QV
Sbjct: 1028 LRRVCVIDFDVHHGNGTQDILCSTYDPRFLYVSLHAGGSEVNGYDIDEDDALFLGGYCGGKKQDSIFPGRCGDFSPHEGVLNLPLGKQV 1116
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: B8BX74_THAPS (Hist_deacetyl domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX74_THAPS) HSP 1 Score: 74.3 bits (181), Expect = 1.110e-13 Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA-------FNRGEGENTSQAK---------IFPGTGAEGEAHGNVLNIPLGDQV 219
+ RV V+DFDVHHGNGTQD+LC T P FLY S+HA ++ + E+ S+ IFPG + H VLNIPLG +V
Sbjct: 1006 LRRVCVIDFDVHHGNGTQDILCSTYDPRFLYVSLHAGGADINGYDDEDSEDESRRLKPGSKTTEGIFPGRCGDSSPHTGVLNIPLGQRV 1094
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A835YWT3_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT3_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.120e-13 Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHG--NVLNIPLGDQV 219
+ RV VVD DVHHGNGTQD+L RT +P YAS+HA + G+ ++ + A +FP TG + +G NVLNIP+ +
Sbjct: 1207 LRRVCVVDIDVHHGNGTQDLLARTHNPLLFYASVHAHSVGDAKDGAGA-VFPRTGGPNDKYGTGNVLNIPIAPPI 1280
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A7S3LBJ3_9STRA (Hypothetical protein n=4 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBJ3_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 7.150e-13 Identity = 38/86 (44.19%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA-------------FNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQV 219
+ RV V+DFDVHHGNGTQD+LC T P +LY SIHA N I+PG + H NVLN+PLG +V
Sbjct: 701 LRRVCVIDFDVHHGNGTQDILCSTNDPRYLYISIHAGGAQVNGISPDDDMNGLFPHANKSGGIYPGRCGDVSPHPNVLNLPLGQRV 786
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A1Z5JQI9_FISSO (Histone deacetylase 6 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQI9_FISSO) HSP 1 Score: 72.0 bits (175), Expect = 7.220e-13 Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA----FNRGEGEN-----------TSQAKIFPGTGAEGEAHGNVLNIPLGDQVL 222
+++V V+DFDVHHGNGTQD+LC T P FLY S+HA N E+ +++ I+PG + H VLNIPLG++VL
Sbjct: 868 LSKVCVIDFDVHHGNGTQDILCSTYDPRFLYVSMHAGGAHVNGVSMEDDPDHQLHVLAGSAKQGIYPGRCGDTSPHEGVLNIPLGEKVL 956
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A1Z5JP44_FISSO (Histone deacetylase 6 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP44_FISSO) HSP 1 Score: 71.6 bits (174), Expect = 9.860e-13 Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQ-------------AK--IFPGTGAEGEAHGNVLNIPLGDQVL 222
+++V V+DFDVHHGNGTQD+LC T P FLY S+HA T + AK I+PG + H VLNIPLG++VL
Sbjct: 872 LSKVCVIDFDVHHGNGTQDILCSTYDPRFLYVSMHAGGAHVNGVTMEDDPDHQLHVLAGSAKQGIYPGRCGDTSPHEGVLNIPLGEKVL 960
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A7S4IKT0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKT0_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 3.210e-12 Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query: 1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA----FNRGEGENTSQ-----------AKIFPGTGAEGEAHGNVLNIPLGDQV 219
+ RV ++DFDVHHGNGTQD+LC T FLY S+HA N + + +Q IFPG + H VLNIPLG +V
Sbjct: 195 LKRVCIIDFDVHHGNGTQDILCSTHDSRFLYVSLHAGGAHINGYDDQGDAQDGHTVLGGGKNEGIFPGRCGDTSPHEGVLNIPLGSKV 282 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10226.369.1 >prot_Ecto-sp8_S_contig10226.369.1 ID=prot_Ecto-sp8_S_contig10226.369.1|Name=mRNA_Ecto-sp8_S_contig10226.369.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=82bp MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIback to top mRNA from alignment at Ecto-sp8_S_contig10226:559..804- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10226.369.1 ID=mRNA_Ecto-sp8_S_contig10226.369.1|Name=mRNA_Ecto-sp8_S_contig10226.369.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10226:559..804- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10226:559..804- >mRNA_Ecto-sp8_S_contig10226.369.1 ID=mRNA_Ecto-sp8_S_contig10226.369.1|Name=mRNA_Ecto-sp8_S_contig10226.369.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10226:559..804- (Ectocarpus species8 EcLAC_412)back to top |