mRNA_Ecto-sp8_S_contig10226.369.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10226.369.1
Unique NamemRNA_Ecto-sp8_S_contig10226.369.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A6H5L3L8_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 9.940e-43
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVLVCG 231
            +ARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQV   G
Sbjct:  281 VARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVHPAG 357          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 6.660e-25
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1
Query:   70 TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQVLVCG 231
            TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLN+PLGDQV   G
Sbjct: 1727 TEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHGNVLNLPLGDQVHPAG 1780          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A7S1VI57_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VI57_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.620e-15
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA-------FNRGEGENT-------SQAKIFPGTGAEGEAHGNVLNIPLGDQV 219
            + RV ++DFDVHHGNGTQD+LC T  P F Y S+HA       +   + EN        +Q  IFPG   +   H  VLNIPLGD+V
Sbjct:  514 LKRVCIIDFDVHHGNGTQDILCNTFDPRFFYISLHAGGAQINGYETEDSENDFRSFSSKNQDGIFPGRSGDVSPHAGVLNIPLGDKV 600          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: K0TPX8_THAOC (Hist_deacetyl domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPX8_THAOC)

HSP 1 Score: 75.1 bits (183), Expect = 5.960e-14
Identity = 41/89 (46.07%), Postives = 47/89 (52.81%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA----------------FNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQV 219
            + RV V+DFDVHHGNGTQD+LC T  P FLY S+HA                F  G      Q  IFPG   +   H  VLN+PLG QV
Sbjct: 1028 LRRVCVIDFDVHHGNGTQDILCSTYDPRFLYVSLHAGGSEVNGYDIDEDDALFLGGYCGGKKQDSIFPGRCGDFSPHEGVLNLPLGKQV 1116          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: B8BX74_THAPS (Hist_deacetyl domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX74_THAPS)

HSP 1 Score: 74.3 bits (181), Expect = 1.110e-13
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA-------FNRGEGENTSQAK---------IFPGTGAEGEAHGNVLNIPLGDQV 219
            + RV V+DFDVHHGNGTQD+LC T  P FLY S+HA       ++  + E+ S+           IFPG   +   H  VLNIPLG +V
Sbjct: 1006 LRRVCVIDFDVHHGNGTQDILCSTYDPRFLYVSLHAGGADINGYDDEDSEDESRRLKPGSKTTEGIFPGRCGDSSPHTGVLNIPLGQRV 1094          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A835YWT3_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWT3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKIFPGTGAEGEAHG--NVLNIPLGDQV 219
            + RV VVD DVHHGNGTQD+L RT +P   YAS+HA + G+ ++ + A +FP TG   + +G  NVLNIP+   +
Sbjct: 1207 LRRVCVVDIDVHHGNGTQDLLARTHNPLLFYASVHAHSVGDAKDGAGA-VFPRTGGPNDKYGTGNVLNIPIAPPI 1280          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A7S3LBJ3_9STRA (Hypothetical protein n=4 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBJ3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 7.150e-13
Identity = 38/86 (44.19%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA-------------FNRGEGENTSQAKIFPGTGAEGEAHGNVLNIPLGDQV 219
            + RV V+DFDVHHGNGTQD+LC T  P +LY SIHA              N           I+PG   +   H NVLN+PLG +V
Sbjct:  701 LRRVCVIDFDVHHGNGTQDILCSTNDPRYLYISIHAGGAQVNGISPDDDMNGLFPHANKSGGIYPGRCGDVSPHPNVLNLPLGQRV 786          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A1Z5JQI9_FISSO (Histone deacetylase 6 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQI9_FISSO)

HSP 1 Score: 72.0 bits (175), Expect = 7.220e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA----FNRGEGEN-----------TSQAKIFPGTGAEGEAHGNVLNIPLGDQVL 222
            +++V V+DFDVHHGNGTQD+LC T  P FLY S+HA     N    E+           +++  I+PG   +   H  VLNIPLG++VL
Sbjct:  868 LSKVCVIDFDVHHGNGTQDILCSTYDPRFLYVSMHAGGAHVNGVSMEDDPDHQLHVLAGSAKQGIYPGRCGDTSPHEGVLNIPLGEKVL 956          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A1Z5JP44_FISSO (Histone deacetylase 6 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP44_FISSO)

HSP 1 Score: 71.6 bits (174), Expect = 9.860e-13
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQ-------------AK--IFPGTGAEGEAHGNVLNIPLGDQVL 222
            +++V V+DFDVHHGNGTQD+LC T  P FLY S+HA        T +             AK  I+PG   +   H  VLNIPLG++VL
Sbjct:  872 LSKVCVIDFDVHHGNGTQDILCSTYDPRFLYVSMHAGGAHVNGVTMEDDPDHQLHVLAGSAKQGIYPGRCGDTSPHEGVLNIPLGEKVL 960          
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Match: A0A7S4IKT0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKT0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.210e-12
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query:    1 MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHA----FNRGEGENTSQ-----------AKIFPGTGAEGEAHGNVLNIPLGDQV 219
            + RV ++DFDVHHGNGTQD+LC T    FLY S+HA     N  + +  +Q             IFPG   +   H  VLNIPLG +V
Sbjct:  195 LKRVCIIDFDVHHGNGTQDILCSTHDSRFLYVSLHAGGAHINGYDDQGDAQDGHTVLGGGKNEGIFPGRCGDTSPHEGVLNIPLGSKV 282          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10226.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3L8_9PHAE9.940e-4394.81Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
D7G6J0_ECTSI6.660e-2592.59CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1VI57_9STRA6.620e-1545.98Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
K0TPX8_THAOC5.960e-1446.07Hist_deacetyl domain-containing protein n=1 Tax=Th... [more]
B8BX74_THAPS1.110e-1344.94Hist_deacetyl domain-containing protein n=1 Tax=Th... [more]
A0A835YWT3_9STRA1.120e-1349.33AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3LBJ3_9STRA7.150e-1344.19Hypothetical protein n=4 Tax=Amphora coffeiformis ... [more]
A0A1Z5JQI9_FISSO7.220e-1343.82Histone deacetylase 6 n=1 Tax=Fistulifera solaris ... [more]
A0A1Z5JP44_FISSO9.860e-1344.94Histone deacetylase 6 n=1 Tax=Fistulifera solaris ... [more]
A0A7S4IKT0_9STRA3.210e-1243.18Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10226contigEcto-sp8_S_contig10226:559..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score106.3
Seed ortholog evalue6.9e-21
Seed eggNOG ortholog2880.D7G6J0
Model size246
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
Cds size246
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.9251575-CDS-Ecto-sp8_S_contig10226:558..8041681143120.9251575-CDS-Ecto-sp8_S_contig10226:558..804Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10226 559..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10226.369.1prot_Ecto-sp8_S_contig10226.369.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10226 559..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10226.369.1

>prot_Ecto-sp8_S_contig10226.369.1 ID=prot_Ecto-sp8_S_contig10226.369.1|Name=mRNA_Ecto-sp8_S_contig10226.369.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=82bp
MARVAVVDFDVHHGNGTQDVLCRTEHPGFLYASIHAFNRGEGENTSQAKI
FPGTGAEGEAHGNVLNIPLGDQVLVCGKSFL*
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mRNA from alignment at Ecto-sp8_S_contig10226:559..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10226.369.1 ID=mRNA_Ecto-sp8_S_contig10226.369.1|Name=mRNA_Ecto-sp8_S_contig10226.369.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10226:559..804- (Ectocarpus species8 EcLAC_412)
ATGGCTCGTGTGGCAGTGGTGGATTTCGACGTCCACCACGGTAACGGCAC ACAGGACGTGCTGTGCCGGACCGAACACCCGGGCTTCCTGTACGCCTCCA TACACGCCTTCAACCGAGGGGAGGGGGAGAACACTTCTCAGGCGAAGATC TTTCCGGGAACCGGCGCTGAGGGGGAGGCGCACGGGAACGTTCTGAATAT CCCTCTGGGCGATCAGGTGCTTGTTTGTGGGAAGTCCTTTCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10226:559..804-

>mRNA_Ecto-sp8_S_contig10226.369.1 ID=mRNA_Ecto-sp8_S_contig10226.369.1|Name=mRNA_Ecto-sp8_S_contig10226.369.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10226:559..804- (Ectocarpus species8 EcLAC_412)
ATGGCTCGTGTGGCAGTGGTGGATTTCGACGTCCACCACGGTAACGGCAC
ACAGGACGTGCTGTGCCGGACCGAACACCCGGGCTTCCTGTACGCCTCCA
TACACGCCTTCAACCGAGGGGAGGGGGAGAACACTTCTCAGGCGAAGATC
TTTCCGGGAACCGGCGCTGAGGGGGAGGCGCACGGGAACGTTCTGAATAT
CCCTCTGGGCGATCAGGTGCTTGTTTGTGGGAAGTCCTTTCTTTGA
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