mRNA_Ecto-sp8_S_contig102238.366.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102238.366.1
Unique NamemRNA_Ecto-sp8_S_contig102238.366.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A6H5JJG5_9PHAE (DMT protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJG5_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 5.900e-31
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 1
Query:    1 GKTIRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVAGL 183
            GK IRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVA L
Sbjct:  100 GKIIRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVASL 160          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A835Z2R1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R1_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.950e-10
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   16 SERSGLLVLATVPLVWGTYAPSVKYLYQMGE--SPPGLLFNFACYVVS 153
            S  + L VLATVP VWGTY PSVK++  +G    PPGL FN ACY+VS
Sbjct:   37 SRAAALAVLATVPCVWGTYTPSVKFMESLGPLVQPPGLFFNAACYLVS 84          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A7S2HES8_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HES8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.980e-10
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   16 SERS-GLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVAGL 183
            +ER+ G+LVL TVPL WGTYAP VKY+Y++    PG +F+   YVV+ LT   +A L
Sbjct:  108 NERALGILVLMTVPLSWGTYAPVVKYVYEINPPVPGFVFSAGYYVVASLTLLTLASL 164          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A7S1FR69_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FR69_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.760e-9
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   28 GLLVLATVPLVWGTYAPSVKYLYQMGESP-PGLLFNFACYVVSVLTFAAVA 177
            GLL+L +VP+VWGTYAP+V+YLY + + P PGL+F+ A Y ++  T + VA
Sbjct:  135 GLLILLSVPVVWGTYAPAVRYLYAVSDPPLPGLIFSAAYYSLASATLSIVA 185          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A448ZQR1_9STRA (EamA domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQR1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-8
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   13 RSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVV--SVLTFAAVAG 180
            R    GLLVLATVP+ WGT+ P+V+ +Y+   S P L+F+FA Y V  SVL  AA  G
Sbjct:  136 RDYGKGLLVLATVPMAWGTFEPAVRLVYRYEPSXPPLVFSFAYYFVAASVLAIAAAXG 193          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A7S4CPL9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CPL9_9EUGL)

HSP 1 Score: 58.2 bits (139), Expect = 1.590e-8
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 GKTIRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFN-----FACYVVSVLTFAA 171
            G T  S    L VLA+VP VWGTYAP+V+Y+Y +    PGL+F+      AC V+SVL F +
Sbjct:  146 GSTEPSRFLQLAVLASVPAVWGTYAPAVRYMYSLPLKVPGLVFSNLYYIVACLVMSVLLFVS 207          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: B7FRX7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRX7_PHATC)

HSP 1 Score: 58.2 bits (139), Expect = 2.220e-8
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    7 TIRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVS 153
            T R  RSGLLVL TVP+ WGT+ P+V+YLY +    PG +F+   Y+V+
Sbjct:    5 TDRERRSGLLVLLTVPVAWGTFEPAVRYLYTIDPPIPGFVFSTCYYLVA 53          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: B7FRX8_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRX8_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 2.030e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   10 IRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLT 162
            +  E  GLLVL TVP+VWGTY P V++LY++    PG +F+   + ++ LT
Sbjct:   92 VTDETVGLLVLLTVPVVWGTYVPVVRFLYEIDPPIPGFVFSVCYFALASLT 142          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A1Z5K2F7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2F7_FISSO)

HSP 1 Score: 55.1 bits (131), Expect = 2.770e-7
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 GKTIRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLT 162
            GK +  ++ G+ VLATVP+VWG+Y P VK LY++    PG +F+ A + V+ ++
Sbjct:   73 GKFLSEKQIGIFVLATVPVVWGSYVPVVKGLYEIDPPIPGFVFSTAYFAVAAVS 126          
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Match: A0A7S4GI16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GI16_9EUGL)

HSP 1 Score: 55.1 bits (131), Expect = 2.810e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   31 LLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVA 177
            L VL +VPLVWGTYAP+V+++Y +    PG+ F+   Y+V+ L  +AVA
Sbjct:  377 LAVLFSVPLVWGTYAPAVRFIYTLPVKVPGIFFSSLYYLVATLFLSAVA 425          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102238.366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JJG5_9PHAE5.900e-3196.72DMT protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835Z2R1_9STRA3.950e-1060.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HES8_9STRA9.980e-1052.63Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A7S1FR69_9STRA4.760e-952.94Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A448ZQR1_9STRA1.220e-851.72EamA domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A7S4CPL9_9EUGL1.590e-848.39Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
B7FRX7_PHATC2.220e-851.02Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B7FRX8_PHATC2.030e-745.10Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5K2F7_FISSO2.770e-742.59Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S4GI16_9EUGL2.810e-748.98Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102238contigEcto-sp8_S_contig102238:42..224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.2
Seed ortholog evalue3.4e-25
Seed eggNOG ortholog2880.D8LTH6
Model size183
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.EamA-like transporter family
EggNOG OGs2S6AJ@2759,COG0697@1
Cds size183
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.660612-CDS-Ecto-sp8_S_contig102238:41..2241681143120.660612-CDS-Ecto-sp8_S_contig102238:41..224Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102238 42..224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102238.366.1prot_Ecto-sp8_S_contig102238.366.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102238 42..224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102238.366.1

>prot_Ecto-sp8_S_contig102238.366.1 ID=prot_Ecto-sp8_S_contig102238.366.1|Name=mRNA_Ecto-sp8_S_contig102238.366.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=61bp
GKTIRSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVV
SVLTFAAVAGL
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mRNA from alignment at Ecto-sp8_S_contig102238:42..224-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102238.366.1 ID=mRNA_Ecto-sp8_S_contig102238.366.1|Name=mRNA_Ecto-sp8_S_contig102238.366.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102238:42..224- (Ectocarpus species8 EcLAC_412)
GGGAAGACCATCCGCTCGGAGCGGAGCGGCCTCCTCGTGCTCGCCACCGT ACCGTTGGTGTGGGGTACTTACGCGCCTAGCGTGAAGTACTTGTACCAGA TGGGAGAATCGCCGCCGGGGCTGCTGTTCAACTTTGCGTGCTACGTGGTG TCCGTGCTGACGTTCGCGGCTGTCGCCGGTCTC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102238:42..224-

>mRNA_Ecto-sp8_S_contig102238.366.1 ID=mRNA_Ecto-sp8_S_contig102238.366.1|Name=mRNA_Ecto-sp8_S_contig102238.366.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102238:42..224- (Ectocarpus species8 EcLAC_412)
GGGAAGACCATCCGCTCGGAGCGGAGCGGCCTCCTCGTGCTCGCCACCGT
ACCGTTGGTGTGGGGTACTTACGCGCCTAGCGTGAAGTACTTGTACCAGA
TGGGAGAATCGCCGCCGGGGCTGCTGTTCAACTTTGCGTGCTACGTGGTG
TCCGTGCTGACGTTCGCGGCTGTCGCCGGTCTC
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