mRNA_Ecto-sp8_S_contig10222.365.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10222.365.1
Unique NamemRNA_Ecto-sp8_S_contig10222.365.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: D8LFE5_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE5_ECTSI)

HSP 1 Score: 477 bits (1227), Expect = 7.480e-165
Identity = 244/258 (94.57%), Postives = 249/258 (96.51%), Query Frame = 1
Query:    1 AHQDCIGGVPSATAPATALQLVDSTIATLEASLGLPPGAVLTPADAKDIAGGNAKRPTKGKEGANKGGRKKAGKAASSTAGVSSADQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            A +D IGGVPS TAPATALQLVDSTIATLEASLGLPPGAVLTP DAK IAGG+ KRPTKGKEG NKGGRKKAGKAA+S  GVSSADQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELV+PPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDK+LPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR
Sbjct:   23 ALKDSIGGVPSTTAPATALQLVDSTIATLEASLGLPPGAVLTPVDAKGIAGGDTKRPTKGKEGVNKGGRKKAGKAAASNVGVSSADQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVVPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKILPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 280          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: A0A7S2Y0W4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0W4_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.220e-75
Identity = 116/173 (67.05%), Postives = 138/173 (79.77%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            DQPD TK+DLRVG+IT+VW HETADKLYCEEIDVGE  PR IASGLVPHYSLEEM+GR+V+V+CNLKPRNL GFKS GMV+CAV    DG E VE V PPEG+AVGER+ +EGL GGPFEP++AAQ+EKKKV   VLP L+TD      W+ H +++S G C A T+ +G +R
Sbjct:   79 DQPDITKIDLRVGKITKVWRHETADKLYCEEIDVGEDEPRAIASGLVPHYSLEEMQGRRVLVLCNLKPRNLVGFKSHGMVLCAVENKPDGSEKVEFVEPPEGAAVGERVQYEGLGGGPFEPITAAQVEKKKVFPAVLPNLSTDANHVGMWKGHKMMTSAGPCVAATISNGKLR 251          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: D0MS46_PHYIT (tRNA-binding domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0MS46_PHYIT)

HSP 1 Score: 218 bits (555), Expect = 2.050e-64
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            +QP+ TK+D+RVG+I +VW HETADKLYCEEIDVGE  PR+IASGLV HYSLEEM+ R+V+V+CNLKPRNL GF+S GMV+CA   L DGKE V  V PPEG+ +GER++FEGL G PF P   AQ+EKKKVL  +  ++ TD  G  +W++H   +S G CTAP V +G +R
Sbjct:   59 NQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDEPRHIASGLVYHYSLEEMQDRRVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEKVAFVTPPEGAKIGERITFEGLTGEPFSP---AQVEKKKVLTVLGDDMKTDDNGVAKWKEHVFGTSAGPCTAP-VNNGVIR 227          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: G4YER7_PHYSP (tRNA-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YER7_PHYSP)

HSP 1 Score: 218 bits (554), Expect = 2.800e-64
Identity = 106/173 (61.27%), Postives = 131/173 (75.72%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            +QP+ TK+D+RVG+I +VW HETADKLYCEEIDVGE APR IASGLV HYSLE+M+  +V+V+CNLKPRNL GF+S GMV+CA   L DGKE V  V PPEG+ VGER++FEGL G PF P   AQ+EKKKVL  +  E+ TD  G  +W++H   +S G CTAP V +G +R
Sbjct:   58 NQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDAPRQIASGLVHHYSLEQMQDARVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEKVAFVTPPEGAKVGERITFEGLTGEPFSP---AQVEKKKVLTVLGDEMKTDDSGVAKWKEHVFGTSAGPCTAP-VNNGLIR 226          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: A0A397BX65_9STRA (tRNA-binding domain-containing protein (Fragment) n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BX65_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.270e-63
Identity = 102/173 (58.96%), Postives = 129/173 (74.57%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            +Q + TK+D+RVG+I  VW HETADKLYCEEIDVGE APR IASGLV HY+LE+M+GR V+VMCNLK RNL GFKS GMV+CAV    DG E +  V PP G+ VGER++++GL GG  EP + AQ+EKKKVL      L +D EG  +W DH +++S G CT+P++R G +R
Sbjct:   50 EQAEITKLDIRVGKIVNVWKHETADKLYCEEIDVGEDAPRQIASGLVKHYTLEQMQGRLVLVMCNLKARNLVGFKSHGMVLCAVATNADGSESIAFVEPPAGAVVGERVTYDGLTGG--EPWTPAQVEKKKVLVSAGEGLVSDAEGVAKWNDHVMLTSAGPCTSPSIRSGILR 220          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: A0A067CXJ5_SAPPC (tRNA-binding domain-containing protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CXJ5_SAPPC)

HSP 1 Score: 216 bits (549), Expect = 1.490e-63
Identity = 102/173 (58.96%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            DQP+ TK+D+RVG+IT+VW HETADKLYCEEIDVGEG PR IASGLV HYSLE+M+GR ++VMCNLKPR+L GFKS GMV+CAV    DG E V  V PP  + +GER+ +EGL+G P+ P   AQ+EKKKV+      L++D  G  +W++HA ++S G CT+P+V +G +R
Sbjct:   56 DQPEITKLDIRVGKITKVWKHETADKLYCEEIDVGEGEPRLIASGLVKHYSLEQMQGRMLLVMCNLKPRSLVGFKSHGMVLCAVATDADGSERVAFVEPPANAKIGERIHYEGLSGEPWTP---AQVEKKKVVVVAGEHLSSDANGVAKWKNHAFMTSAGPCTSPSVCNGILR 225          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: A0A8J5IV42_9STRA (tRNA-binding domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IV42_9STRA)

HSP 1 Score: 219 bits (559), Expect = 4.950e-63
Identity = 120/242 (49.59%), Postives = 159/242 (65.70%), Query Frame = 1
Query:   49 TALQLVDSTIATLEASLGLPPGAVLTPADAKDIAGGNAKRPTKGKEGANKGGRKKAGKAASSTAGVSSADQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            +A + + S I++LE  LG+   A +          GN K+P + KE       +       + A  +  +QP+ TK+D+RVG+I +VW HETADKLYCEEIDVGE  PR+IASGLV HYSLEEM+ R+V+V+CNLKPRNL GF+S GMV+CA   LGD KE V  V PPEG+ +GER++FEGL G PF P   AQ+EKKKVL  +  ++ TD  G  +W++H   +S G CTAP V +G +R
Sbjct:  159 SATEQIQSLISSLETDLGIEANAPI----------GNDKKPQQQKE-------QXXXXXXPAKAPAADPNQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDEPRHIASGLVYHYSLEEMQDRRVLVLCNLKPRNLVGFRSHGMVMCAAVPLGDDKEKVAFVTPPEGAKIGERITFEGLTGEPFSP---AQVEKKKVLTVLGDDMKTDDNGVAKWKEHVFGTSAGPCTAP-VNNGVIR 379          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: A0A662WEL3_9STRA (tRNA-binding domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEL3_9STRA)

HSP 1 Score: 215 bits (547), Expect = 5.560e-63
Identity = 106/173 (61.27%), Postives = 129/173 (74.57%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            +QP+ TK+D+RVGQI +VW HETADKLYCEEIDVGE APR IASGLV HYSLEEM+GR+V+V+CNLKPRNL GF+S GMV+C    L DGKE V  V PP  + +GER+SFEGL G PF P   AQ+EKKKVL  +  ++ TD  G  +W+ H   +S G CTAP V +G +R
Sbjct:   77 NQPEITKLDIRVGQIVKVWKHETADKLYCEEIDVGEDAPRQIASGLVFHYSLEEMQGRRVLVLCNLKPRNLVGFRSHGMVMCTAVPLADGKERVAFVTPPTDAKLGERVSFEGLDGEPFSP---AQVEKKKVLAVLGDDMKTDDAGVAKWKTHVFGTSAGPCTAP-VTNGVIR 245          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: A0A024UG59_9STRA (Methionine-tRNA ligase, beta subunit n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG59_9STRA)

HSP 1 Score: 214 bits (545), Expect = 7.070e-63
Identity = 100/173 (57.80%), Postives = 130/173 (75.14%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            +Q + TK+D+RVG+I  VW HETADKLYCEEIDVGE  PR IASGLV HY+LE+M+GR+++VMCNLKPRNL GFKS GMV+CAV    DG E+V  V PP G+ +GER+ +EGL G P+ P   AQ+EKKKVL      L +D  G  +W+DH +++S G CT+P++R+G +R
Sbjct:   62 EQAEITKLDIRVGKIVNVWKHETADKLYCEEIDVGEDEPRQIASGLVKHYTLEQMQGRRLLVMCNLKPRNLVGFKSHGMVLCAVSTNEDGSENVAFVEPPAGAGIGERVMYEGLTGEPWTP---AQVEKKKVLVTAGEGLVSDENGVAKWKDHVMLTSAGPCTSPSIRNGILR 231          
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Match: A0A225VLY1_9STRA (Methionine-tRNA ligase, beta subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLY1_9STRA)

HSP 1 Score: 214 bits (544), Expect = 7.220e-63
Identity = 104/173 (60.12%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  256 DQPDGTKVDLRVGQITRVWTHETADKLYCEEIDVGEGAPRNIASGLVPHYSLEEMKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSAVGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHALVSSCGACTAPTVRDGAVR 774
            +QP+ TK+D+RVG+I +VW HETADKLYCEEIDVGE  PR IASGLV HY+LEEM+ R V+V+CNLKPRNL GF+S GMV+CA   L DGKE V  V PP+G+ VGER++FEGL G   EP+S AQ+EKKKVL  +  ++ TD +G  +W++H   +S G CTAP V +G +R
Sbjct:   53 NQPEITKLDIRVGKIVKVWKHETADKLYCEEIDVGEDEPRQIASGLVHHYTLEEMQDRSVLVLCNLKPRNLVGFRSHGMVMCAAVPLEDGKEKVAFVTPPQGAKVGERVTFEGLTG---EPLSPAQVEKKKVLTVLGDDMKTDDKGVAKWKEHVFNTSAGPCTAP-VTNGLIR 221          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10222.365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE5_ECTSI7.480e-16594.57tRNA-binding domain-containing protein n=2 Tax=Ect... [more]
A0A7S2Y0W4_9STRA2.220e-7567.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D0MS46_PHYIT2.050e-6460.69tRNA-binding domain-containing protein n=11 Tax=Ph... [more]
G4YER7_PHYSP2.800e-6461.27tRNA-binding domain-containing protein n=3 Tax=Phy... [more]
A0A397BX65_9STRA1.270e-6358.96tRNA-binding domain-containing protein (Fragment) ... [more]
A0A067CXJ5_SAPPC1.490e-6358.96tRNA-binding domain-containing protein (Fragment) ... [more]
A0A8J5IV42_9STRA4.950e-6349.59tRNA-binding domain-containing protein n=1 Tax=Phy... [more]
A0A662WEL3_9STRA5.560e-6361.27tRNA-binding domain-containing protein n=1 Tax=Not... [more]
A0A024UG59_9STRA7.070e-6357.80Methionine-tRNA ligase, beta subunit n=1 Tax=Aphan... [more]
A0A225VLY1_9STRA7.220e-6360.12Methionine-tRNA ligase, beta subunit n=1 Tax=Phyto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10222contigEcto-sp8_S_contig10222:625..4993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score241.9
Seed ortholog evalue1.5e-61
Seed eggNOG ortholog2880.D8LFE5
Model size1560
KEGG rclassRC00055,RC00523
KEGG koko:K01866,ko:K01894,ko:K15437
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
EC6.1.1.1
Cds size360
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10222.365.1prot_Ecto-sp8_S_contig10222.365.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10222 1408..3860 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.5655005-UTR-Ecto-sp8_S_contig10222:624..14071681143120.5655005-UTR-Ecto-sp8_S_contig10222:624..1407Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10222 625..1407 -
1681143120.6105657-UTR-Ecto-sp8_S_contig10222:3860..39451681143120.6105657-UTR-Ecto-sp8_S_contig10222:3860..3945Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10222 3861..3945 -
1681143120.6190507-UTR-Ecto-sp8_S_contig10222:4295..44041681143120.6190507-UTR-Ecto-sp8_S_contig10222:4295..4404Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10222 4296..4404 -
1681143120.6319857-UTR-Ecto-sp8_S_contig10222:4770..49931681143120.6319857-UTR-Ecto-sp8_S_contig10222:4770..4993Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10222 4771..4993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.576059-CDS-Ecto-sp8_S_contig10222:1407..15151681143120.576059-CDS-Ecto-sp8_S_contig10222:1407..1515Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10222 1408..1515 -
1681143120.5854647-CDS-Ecto-sp8_S_contig10222:2036..21771681143120.5854647-CDS-Ecto-sp8_S_contig10222:2036..2177Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10222 2037..2177 -
1681143120.594078-CDS-Ecto-sp8_S_contig10222:2826..28981681143120.594078-CDS-Ecto-sp8_S_contig10222:2826..2898Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10222 2827..2898 -
1681143120.602468-CDS-Ecto-sp8_S_contig10222:3821..38601681143120.602468-CDS-Ecto-sp8_S_contig10222:3821..3860Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10222 3822..3860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10222.365.1

>prot_Ecto-sp8_S_contig10222.365.1 ID=prot_Ecto-sp8_S_contig10222.365.1|Name=mRNA_Ecto-sp8_S_contig10222.365.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=120bp
MKGRKVIVMCNLKPRNLKGFKSQGMVVCAVGALGDGKEHVELVIPPEGSA
VGERLSFEGLAGGPFEPVSAAQMEKKKVLDKVLPELTTDVEGTVRWRDHA
LVSSCGACTAPTVRDGAVR*
back to top

mRNA from alignment at Ecto-sp8_S_contig10222:625..4993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10222.365.1 ID=mRNA_Ecto-sp8_S_contig10222.365.1|Name=mRNA_Ecto-sp8_S_contig10222.365.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4369bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10222:625..4993- (Ectocarpus species8 EcLAC_412)
GCCCATCAGGACTGCATCGGTGGCGTCCCCTCCGCAACAGCACCAGCGAC AGCGCTACAACTTGTAGATAGCACCATCGCCACCCTCGAGGCGTCTCTCG GTTTGCCTCCAGGAGCCGTTCTTACTCCCGCCGATGCCAAGGACATTGCG GGAGGAAATGCGAAGCGTCCCACGAAGGGAAAAGAAGGCGCCAATAAAGG GGGGAGAAAAAAGGCCGGCAAAGGTACAACGCCTAATTCCCCCTTGGGGA GGAAACCTCAGGAGATAACCTCGAGTTTCGTCCCTCTAGTAATTCATGAC GGTTTATTTCCCGCTCCCGCTGGTTACCTGTACAACAATACGCATGCCAA CAGGTCGATGCCGGTCGTAAGCCAGCGGTCTGTACAGATTCTTCCCGTTC GAGCTATACAATGCTTAGGGCGATCAGCCAAAACATTGTGTGTAAAATCA TTGTGTTACAACAATGGGCACCACTGTGCTACACGGGTGCATTCATAGCT GCTGTGGACGCCGACTTGAGGTTTTCACTTTTTGTATTTCGCTTGTTGGT GTGTTGACTGGGACACTACGAAACGACCACTAACTGCAGCAGCTTCTTCA ACCGCCGGAGTTTCTTCCGCGGATCAGCCCGATGGAACGAAGGTCGACCT GAGGGTGGGGCAAATCACTCGAGTCTGGACGCACGAGACGGCCGATAAGT GAGTCGCGGTTCGCGGTATTCCGTATGGGACACAGCGGCACACCACCCAA TACCCGCTTCGTCGGTGCGCTCTCCTCGAATTCTCCACCGAACTAAACCA TGGTTGCTTCCGATAGCGACTGGCTATCTACGTTGTTGATGTCTCCTTGC TGCACAGAAATTGGGTGACAACAAGCGACTCTGTGTAGGCACGGGGTGTG CATATACCACGTCTCATACCTCATTCGTTGCTTCGACGGTGACAGTATCC TAGCCGTAGGAGTTGAGACGGCACGGCAATTCCCTGCAAGAGCGAAGGCA TGTTTTTGTGAACGTTTTCTCTGGGTGCTGGGGATAACGTCCAACCAGGC TATACTGCGAGGAGATTGACGTTGGAGAAGGAGCTCCTCGAAACATTGCT AGCGGGCTCGTGCCGCACTACTCCCTCGAGGAGATGAAGGGAAGAAAGGT TATCGTCATGTGTAACCTGAAGGTGAGGGTATGCGTCTTGACGAACACAT CTCGACAATTTACTGTTAGAAACCCGACGAATCGTTCACAGAAACTGCGG ACGGCCAAGGGACTTGGGACTGCTGAGCGTTGTAGCGTCCCTGGATCAAC AGCTGTCACGTTTTGGACGACGACAACGTGTGTTGCATAGTAGATTTTAG GACAATAAGACACGGCGTACTGCAGCGGCCGTGCAACATACTGGTACTGG ATGAAGGGCGGACAAATGCCATGGTGTGATTAACTGGATAGAGAGTTTCG AGAGTCGCTTTGAAGCATTGGACCAGAAGTCGTTGGGAGTCAGGCTCGGG CGGTGAGGGCGTGAGGCCAGCGTATGTGCCGATATCCATCTATGCACATG TTAGGGCTTATTTTTGCACGATGGTTCTTACGCAAAGGTGTACACAGCCC GTTGCTTCTGCCCGCCCTGCCCTTTTCTCTTCCACTCAATGCATCAGTAT TGCAGTACGCTCGGTGCATGCGGTCCTTCCAGGTGCCCTTTCGCCTTCCG CGCTGTTGGATTTCGCCTGTCGGGCCCACGCATGAACTCTCAGCCCCTCG TGTCACAGCTTCGCTGCTGTTTTGAGATTTCTCGCTGGGGACCCGTCACA CTTACACGCAACGGGTGATATTCCCTTCAGGCTTCCTTTCAGCTCTGAAA CTGCGACCGATTGATGTTGTCCCGCGCCTCTTGTGTGTGTATGGCTTTCT GCGCCCGTTCCCCCACTGCCTGCCACCGCCTTGATGTGGGGTCCACTTTT TGGCCTGTTTTTCTACATAGGCTGTGATTGGTACCGCCATGGGTTTCAAA TCCAACCTCCCGTTTTTGCGCCGTTACGCGTGTCTCTCGTGGCACCGCCC TTCGCCGGCATAATGACGTCTTCCGCGGTGTCGCTCGTCGTGAAGCCGCG CAACCTGAAGGGGTTCAAGAGCCAGGGCATGGTGGTGTGCGCCGTCGGCG CTCTTGGCGACGGCAAGGTGCGGTCGGTGGTTGTCGGAAAGTCTTCGGCG GCACCGCTTGTCCCATGCGAATCATGGTGTTGCAGCATTGTTGCTATTCG TTCCTGTATATGTTTGGGATTTTTGTTTTGTAATGCCTTGGTCAAATAAT GAAAATCAAGCGTAGCCGCACATGTTTCACGTTGGTGCATGTGACGTTGA CCCAATTGAGATCAAAGTTAGAAAATGTTTTGATATCGTGACCACTGTCT TATTACGTTAGCGGTCGGCGTTAATTCCCGCGGTCATCTACACGAGCCGT TGGGATTGGTGGGTTGATGGCAATATGATGGGTTTTCCACGGAATGCACT CCACACATATTTGTATGTTTTCCAGGGTACCGCGTGGGTCGACCACCCTT CCATTGTCGCTCAAATGCGGTTAGTCTTCGGAGATCACTCGTGGTCGTAG CGTAGGGGTTGTGTTCTGCGCTCGTCCCGTTTGCGGGTACTCACAGGCTT CGGGATATGATTGATCCGATCACAGCGGAAACGTCAATATCCGGTATCCA GAACAACCGCTGTCTACACGGATGGCAACACAACGGGAGGGAAATGGGAA AGGTTTTTGCCTTGCGACACAAAGTATCACCAACAATGACGACGACGACG GCATCCTAACCAACAGGAACATGTGGAGCTTGTGATTCCTCCAGAGGGAT CCGCCGTGGGAGAGAGGCTTTCTTTCGAAGGACTTGCGGGCGGGCCCTTC GAGCCCGTTTCCGCTGCACAGATGGAGAAGAAGAAAGTATTGGACAAGGT TCTTCCGGTAAGAGACAGCTTCCGCTGCATTCCGGCGAAAGGCGATACTT CTTGTTTTATTTTGTAGTTGTTTGCAAGGCGACATCATCAGCGTGTCTAC AACGTATTGCACGAGTCTTTACGGAGAGGTAGTTGCAGAGGCCAAATGTT CATGCCCTTTTGCAACTCTTCCAACTGTCACTCCCTCGCATGGGGGGTTA CGGCTCTGATGTACTTCTACTAGAGTGTAAATTGTTCTTGTTTACTTGGT CCACGCGTGTTGGCCCGGGACCACGAACGGCGGAGGACGCCCCACTGCTT TTGAGGCTCACTCCCCTTCCCATCGTCGACTCCCCGTGGCCCCCTTGTGA GCTCAAGGCTACACTTGCCCGGGGATCACCAAACCTTGTGGAACGCGATG CGACGAGCAGCCTCTCGCTTCGGATATAGAATGCGCTCACCCGAAAACGT CGTCATCGTCAAGAGCATAGCGACACCCCCCCCCCGTTGCCTCCTCTCTC CCCCCGCGCGCCCTACCACCTACAATAGGAACTCACCACGGATGTCGAAG GCACGGTGAGGTGGCGAGACCACGCGTTGGTGTCCTCTTGCGGTGCGTGC ACGGCCCCTACCGTCCGTGACGGCGCCGTCCGCTGAATAAACGCTTTTTG GGGACTTGACAGCAGTGTTTCTCTGCCCGTGTAGGCTCCGTGAGAAGGGT AGTACCCGTGTGGGCACCTTGTGGCGCTCACGTTTTTGACTCAACCGCGC CTAGACCACGATTACCAACGTAAACGCTGATGATTCCGGCGTGAGGTGTG CGTTGCACTGCTGACGCATGTAGTTGGGTGGCGACTTCAATGAGGCGCCT GGAAGCTCCCCGAGAGGTCAGTTCCGGTAGCACGGGTAGTGCGCGTACCC GAAGAGTTGCAGCTCGCGAAATCAGTCCTGTGAATCGTTCGGGGCCCCGA GCTTCCCTTAGAGCGGCGATGTGCTTGGCAATAGGCCGGTGCTTGCCCGC GAACTCAGTTGTCGCCAAGGCACTTGGGGAGATTTCGAACGCGCATGGTC CGTCCCAGGTAGGAGATGTCGGTGAAAGGGCTATATGGAGGGGCAGGTGG CTTGTTCTTCGATTTTTTTGTTCCGCGCTCCATGTTTCCTCATTGGTACG CGTGGAACACATCATCGAGTTACACCCCAGAAGGCCATCAATAACCTTGA GCTAAATAGCATCCGCGGCCTCAGGCACACCAGATGTGGAACGGCAGAGA CGCAGGGTTTCTTGCTAGCAATGCAATTTCTACCGTCTATTTTCGCCCCT TATAGATACCGTATCGGATAATCCTTTTGTCACGGCATGTGAAACCAGAC TACAGCCTGGAGAAGGTCTATCATCTTCCGCCTTTCGTACGCACGGCGTC ATCCGCCCTCGCTGCTGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10222:625..4993-

>mRNA_Ecto-sp8_S_contig10222.365.1 ID=mRNA_Ecto-sp8_S_contig10222.365.1|Name=mRNA_Ecto-sp8_S_contig10222.365.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10222:625..4993- (Ectocarpus species8 EcLAC_412)
ATGAAGGGAAGAAAGGTTATCGTCATGTGTAACCTGAAGCCGCGCAACCT
GAAGGGGTTCAAGAGCCAGGGCATGGTGGTGTGCGCCGTCGGCGCTCTTG
GCGACGGCAAGGAACATGTGGAGCTTGTGATTCCTCCAGAGGGATCCGCC
GTGGGAGAGAGGCTTTCTTTCGAAGGACTTGCGGGCGGGCCCTTCGAGCC
CGTTTCCGCTGCACAGATGGAGAAGAAGAAAGTATTGGACAAGGTTCTTC
CGGAACTCACCACGGATGTCGAAGGCACGGTGAGGTGGCGAGACCACGCG
TTGGTGTCCTCTTGCGGTGCGTGCACGGCCCCTACCGTCCGTGACGGCGC
CGTCCGCTGA
back to top